mRNA_H-paniculata_contig9351.17124.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9351.17124.1
Unique NamemRNA_H-paniculata_contig9351.17124.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.250e-15
Identity = 42/65 (64.62%), Postives = 50/65 (76.92%), Query Frame = -1
Query:   49 VDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWGVVDTWKGS 243
            ++ PLL ALA  +LAIP++QAQSER FS+AGL VT  R+R+  ENVELLV LR  WGVVD WK S
Sbjct:  492 LEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNVWGVVDEWKKS 556          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 4.570e-13
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = -1
Query:   49 AVDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWGVVDTWKGS 246
            + D P L  LA  +LAIPATQA+SER FS AG IVTK RN ++P  VELLV LR +W +V+ W+ S
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 216          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.160e-12
Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = -1
Query:   49 VDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWGVVDTWKGS 243
             D P L  LA  +LAIPATQA+SER FS AG IVTK RN ++P  VELLV LR +W +V+ W+ S
Sbjct:  232 ADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRHSWKIVEEWEQS 296          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-10
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = -1
Query:   49 LLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWGVVDTWKGS 207
            +L IPA+Q QSER FSSAGL+VTK R RM PENVEL++ LR     VD W G+
Sbjct:  429 VLCIPASQPQSERVFSSAGLVVTKTRARMDPENVELMLFLRNVLREVDRWNGN 481          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.120e-9
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -1
Query:   79 AVDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTT 246
            A + P L +LA  +L IPA QAQSER FSSAGL+VTK R RM PENV L+V LR T
Sbjct:  488 AREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRNT 543          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A820WCL7_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820WCL7_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 6.030e-7
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = -1
Query:   43 GKPAAVDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWGVVDTWKGSQA 258
            G+ AA   PLL  LA  L +IPAT +++ER FS +G+I+   R R+SP+ V+ ++ +R+   V+ T K + +
Sbjct:   51 GEFAASKFPLLKCLARKLFSIPATSSETERLFSYSGIILNNRRQRLSPDQVDNMLVIRSARKVLTTLKNNDS 122          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A094I505_9PEZI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4519 (FW-2642) TaxID=1420914 RepID=A0A094I505_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 8.060e-7
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = -1
Query:   61 PRPGGKPAAVDI-----------PLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWG-VVDT 270
            PRPG    A DI           P++ A+A   LAIPAT A SER FS+   I+TK RNR+SPE +  L+ LR  WG ++DT
Sbjct:  106 PRPG---PATDILKYWAAKQYQYPIIAAIARDHLAIPATSAPSERVFSNGANILTKKRNRLSPETLRYLLCLR-DWGHILDT 183          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A151I7T7_9HYME (Zinc finger BED domain-containing protein 1 n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7T7_9HYME)

HSP 1 Score: 55.8 bits (133), Expect = 9.090e-7
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = -1
Query:   61 KPAAVDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWGVVDT 255
            K  A   P+L+ LA   L IPA+ A SERTFS+AG IVT  R+ +SPENV +LV L     ++++
Sbjct:  151 KARADRFPILSNLARKYLCIPASSANSERTFSTAGNIVTSKRSCLSPENVSMLVFLYQNKSIIES 215          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: UPI0005F55F89 (zinc finger BED domain-containing protein 1-like n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F55F89)

HSP 1 Score: 56.2 bits (134), Expect = 9.620e-7
Identity = 32/56 (57.14%), Postives = 37/56 (66.07%), Query Frame = -1
Query:   88 KPAAVDIPLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVAL 255
            K  A   P L  LA   L+IPAT A +ERTFS+AG IVT  RN +SPENV +LV L
Sbjct:  213 KTRADKFPALAILARKYLSIPATSASAERTFSTAGNIVTPKRNCLSPENVNMLVFL 268          
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Match: A0A094IHT3_9PEZI (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Pseudogymnoascus sp. VKM F-4518 (FW-2643) TaxID=1420913 RepID=A0A094IHT3_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 9.760e-7
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = -1
Query:   61 PRPGGKPAAVDI-----------PLLTALAWPLLAIPATQAQSERTFSSAGLIVTKARNRMSPENVELLVALRTTWG-VVDT 270
            PRPG    A DI           P++ A+A   LAIPAT A SER FS+   I+TK RNR+SPE +  L+ LR  WG ++DT
Sbjct:  138 PRPG---PATDILKYWAAKQYQYPIIAAIAQDHLAIPATSAPSERVFSNGADILTKKRNRLSPETLRYLLCLR-DWGHILDT 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9351.17124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCS5_ECTSI1.250e-1564.62Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JPB0_9PHAE4.570e-1357.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWI1_9PHAE1.160e-1258.46Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JJV8_9PHAE2.200e-1062.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE1.120e-964.29Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A820WCL7_9BILA6.030e-738.89Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A094I505_9PEZI8.060e-746.34Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ps... [more]
A0A151I7T7_9HYME9.090e-747.69Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
UPI0005F55F899.620e-757.14zinc finger BED domain-containing protein 1-like n... [more]
A0A094IHT3_9PEZI9.760e-746.34Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9351contigH-paniculata_contig9351:4191..4580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size392
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.1584504-CDS-H-paniculata_contig9351:4190..45561622931163.1584504-CDS-H-paniculata_contig9351:4190..4556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9351 4191..4556 +
1691481618.9041064-CDS-H-paniculata_contig9351:4190..45561691481618.9041064-CDS-H-paniculata_contig9351:4190..4556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9351 4191..4556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931163.1807644-UTR-H-paniculata_contig9351:4556..45801622931163.1807644-UTR-H-paniculata_contig9351:4556..4580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9351 4557..4580 +
1691481618.9158275-UTR-H-paniculata_contig9351:4556..45801691481618.9158275-UTR-H-paniculata_contig9351:4556..4580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9351 4557..4580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9351.17124.1prot_H-paniculata_contig9351.17124.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9351 4191..4556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9351.17124.1

>prot_H-paniculata_contig9351.17124.1 ID=prot_H-paniculata_contig9351.17124.1|Name=mRNA_H-paniculata_contig9351.17124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
SLISHKEIFYKKSGGLRPLPCVHHTPRGPERDEKLDILRGHPVARLGDNQ
PSARKRALRLRLCCGDSKQRPSKRCEQRDIDGCGFSARSGWVVVSSSWST
SVAKPFVFLYAYISTAASRWK*
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mRNA from alignment at H-paniculata_contig9351:4191..4580+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9351.17124.1 ID=mRNA_H-paniculata_contig9351.17124.1|Name=mRNA_H-paniculata_contig9351.17124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig9351:4191..4580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTAATTTCTCATAAAGAAATATTCTATAAAAAGAGTGGTGGCCTGCG ACCCCTTCCATGTGTCCACCACACCCCACGTGGTCCTGAGCGCGACGAGA AGCTCGACATTCTCCGGGGACATCCTGTTGCGCGCCTTGGTGACAATCAG CCCAGCGCTCGAAAACGTGCGCTCAGACTGCGCCTGTGTTGCGGGGATAG CAAGCAAAGGCCAAGCAAGCGCTGTGAGCAGCGGGATATCGACGGCTGCG GGTTTTCCGCCAGGTCTGGGTGGGTCGTGGTATCATCCTCATGGTCCACC TCGGTTGCCAAGCCCTTCGTCTTCTTGTACGCCTACATCTCGACAGCAGC CTCGCGCTGGAAATGATCGATCGGCAATGACGGCGCTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9351:4191..4580+

>mRNA_H-paniculata_contig9351.17124.1 ID=mRNA_H-paniculata_contig9351.17124.1|Name=mRNA_H-paniculata_contig9351.17124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig9351:4191..4580+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTAATTTCTCATAAAGAAATATTCTATAAAAAGAGTGGTGGCCTGCG
ACCCCTTCCATGTGTCCACCACACCCCACGTGGTCCTGAGCGCGACGAGA
AGCTCGACATTCTCCGGGGACATCCTGTTGCGCGCCTTGGTGACAATCAG
CCCAGCGCTCGAAAACGTGCGCTCAGACTGCGCCTGTGTTGCGGGGATAG
CAAGCAAAGGCCAAGCAAGCGCTGTGAGCAGCGGGATATCGACGGCTGCG
GGTTTTCCGCCAGGTCTGGGTGGGTCGTGGTATCATCCTCATGGTCCACC
TCGGTTGCCAAGCCCTTCGTCTTCTTGTACGCCTACATCTCGACAGCAGC
CTCGCGCTGGAAATGATCTTTAATTTCTCATAAAGAAATATTCTATAAAA
AGAGTGGTGGCCTGCGACCCCTTCCATGTGTCCACCACACCCCACGTGGT
CCTGAGCGCGACGAGAAGCTCGACATTCTCCGGGGACATCCTGTTGCGCG
CCTTGGTGACAATCAGCCCAGCGCTCGAAAACGTGCGCTCAGACTGCGCC
TGTGTTGCGGGGATAGCAAGCAAAGGCCAAGCAAGCGCTGTGAGCAGCGG
GATATCGACGGCTGCGGGTTTTCCGCCAGGTCTGGGTGGGTCGTGGTATC
ATCCTCATGGTCCACCTCGGTTGCCAAGCCCTTCGTCTTCTTGTACGCCT
ACATCTCGACAGCAGCCTCGCGCTGGAAATGA
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