mRNA_H-paniculata_contig9334.17113.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9334.17113.1
Unique NamemRNA_H-paniculata_contig9334.17113.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9334.17113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9334contigH-paniculata_contig9334:7417..8524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size741
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9334.17113.1prot_H-paniculata_contig9334.17113.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9334 7735..8524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.8574784-UTR-H-paniculata_contig9334:7416..77341622931161.8574784-UTR-H-paniculata_contig9334:7416..7734Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9334 7417..7734 +
1691481618.336649-UTR-H-paniculata_contig9334:7416..77341691481618.336649-UTR-H-paniculata_contig9334:7416..7734Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9334 7417..7734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931161.8724082-CDS-H-paniculata_contig9334:7734..79211622931161.8724082-CDS-H-paniculata_contig9334:7734..7921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9334 7735..7921 +
1691481618.3500292-CDS-H-paniculata_contig9334:7734..79211691481618.3500292-CDS-H-paniculata_contig9334:7734..7921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9334 7735..7921 +
1622931161.888791-CDS-H-paniculata_contig9334:8288..85241622931161.888791-CDS-H-paniculata_contig9334:8288..8524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9334 8289..8524 +
1691481618.3585477-CDS-H-paniculata_contig9334:8288..85241691481618.3585477-CDS-H-paniculata_contig9334:8288..8524Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9334 8289..8524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9334.17113.1

>prot_H-paniculata_contig9334.17113.1 ID=prot_H-paniculata_contig9334.17113.1|Name=mRNA_H-paniculata_contig9334.17113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
MDSQEERCRRRIAKTTRLRSGSQYRKDGARSLVWGIRRLSAALPTIMLLV
SYHPRHIFCSAEDFVFVDFNITHGLTFVGSSGTTACLNVTSLEYGHVQGR
ADEHQGSVARVIREEGGEVMVTDVRTSKTGEHERITGTQVS
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mRNA from alignment at H-paniculata_contig9334:7417..8524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9334.17113.1 ID=mRNA_H-paniculata_contig9334.17113.1|Name=mRNA_H-paniculata_contig9334.17113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-paniculata_contig9334:7417..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTCTTTCCTCGTCCCCACAAACACGAACGGGGGTCAACTTTTGTACACG
ATTGATCGTCTTCTCATTGAATGACATTCAAAGTGTATGAAATCTACCTG
AAGCATTGACCATCATTGGCACCCGGCGCATCTTCGGGTACGAATGCGAC
AACCTGAATTGCGCAGGATACGAGTCCTCCTGTCTGTTGTAGTATCTTCC
GCCTGGCAGCTACTCCAGTAGAGTCCTATCCTGAGCTTAACCAAAGCTGT
GACGACGACTTCAAGTGCCACCGTCGAAGCCCTACCAAGCTAGGTCGTGT
CCTTTGTCGTACCGTAGAATGGATAGCCAGGAAGAGCGATGCAGGCGAAG
GATAGCGAAAACGACGCGGCTAAGAAGTGGGAGTCAATATCGGAAGGATG
GGGCGAGATCGCTAGTCTGGGGTATCCGCCGGCTTTCAGCAGCGCTGCCT
ACAATCATGCTTCTCGTCAGCTATCACCCCCGACATATTTTTTGCTCTGC
TGAAGGTTAGGTGTGCAGTTTCTAGTTGTATTTGGAGATGGCGACGGCAT
GTTAGATACAATTGCTGGTCATATTAAAGGATACACCACGCTGTAGAGAA
AATCACCGCATCCCAATGTCTTGACCAACTGAATGAAGAGAGACCGAGCG
GAAGTCCATGGATGTGCGACATGCGAAGGAGAAGAAAGGCGTGTTCGCAT
CACCTTGTGGTGCAAACAACTAACCATTCGTTTCATCTTCCCACCGCAGC
AGTGTCAATCCTGATTCCCTCGGAAAAAAATACCATTACTGACTCTGTAT
CTTGATCATTTGTGATCCCCGCCCATAGACACATTTCTTTTCCTTTGCTT
ATCGTGATTACCTTTGCTACAGATTTTGTTTTTGTCGACTTCAATATCAC
GCATGGGTTGACCTTCGTCGGATCATCGGGCACTACAGCATGCCTGAATG
TGACATCACTCGAATACGGCCACGTGCAGGGCCGAGCAGACGAGCACCAG
GGCTCTGTAGCCCGAGTAATTCGCGAGGAAGGGGGAGAGGTGATGGTCAC
GGATGTGAGGACGAGCAAGACCGGAGAGCACGAGCGCATCACCGGCACTC
AAGTAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9334:7417..8524+

>mRNA_H-paniculata_contig9334.17113.1 ID=mRNA_H-paniculata_contig9334.17113.1|Name=mRNA_H-paniculata_contig9334.17113.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig9334:7417..8524+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAGCCAGGAAGAGCGATGCAGGCGAAGGATAGCGAAAACGACGCG
GCTAAGAAGTGGGAGTCAATATCGGAAGGATGGGGCGAGATCGCTAGTCT
GGGGTATCCGCCGGCTTTCAGCAGCGCTGCCTACAATCATGCTTCTCGTC
AGCTATCACCCCCGACATATTTTTTGCTCTGCTGAAGATGGATAGCCAGG
AAGAGCGATGCAGGCGAAGGATAGCGAAAACGACGCGGCTAAGAAGTGGG
AGTCAATATCGGAAGGATGGGGCGAGATCGCTAGTCTGGGGTATCCGCCG
GCTTTCAGCAGCGCTGCCTACAATCATGCTTCTCGTCAGCTATCACCCCC
GACATATTTTTTGCTCTGCTGAAGATTTTGTTTTTGTCGACTTCAATATC
ACGCATGGGTTGACCTTCGTCGGATCATCGGGCACTACAGCATGCCTGAA
TGTGACATCACTCGAATACGGCCACGTGCAGGGCCGAGCAGACGAGCACC
AGGGCTCTGTAGCCCGAGTAATTCGCGAGGAAGGGGGAGAGGTGATGGTC
ACGGATGTGAGGACGAGCAAGACCGGAGAGCACGAGCGCATCACCGGCAC
TCAAGTAAGCATTTTGTTTTTGTCGACTTCAATATCACGCATGGGTTGAC
CTTCGTCGGATCATCGGGCACTACAGCATGCCTGAATGTGACATCACTCG
AATACGGCCACGTGCAGGGCCGAGCAGACGAGCACCAGGGCTCTGTAGCC
CGAGTAATTCGCGAGGAAGGGGGAGAGGTGATGGTCACGGATGTGAGGAC
GAGCAAGACCGGAGAGCACGAGCGCATCACCGGCACTCAAGTAAGC
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