mRNA_H-paniculata_contig9310.17095.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9310.17095.1
Unique NamemRNA_H-paniculata_contig9310.17095.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A6H5L0U1_9PHAE (Copper homeostasis protein cutC homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U1_9PHAE)

HSP 1 Score: 254 bits (648), Expect = 1.060e-76
Identity = 140/237 (59.07%), Postives = 168/237 (70.89%), Query Frame = 3 
Query:    3 SATQAGLGGAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTH-RQQSSVQLGASG-GGAGDVMMRVSPDLVSNLL 707
            SA+QA  GGAHR+ELCAN AQGGVTPS GDI+ ++ A+ GSHTRVHVLIRPRPGDFVYS LEKQ M  D+ AAV  GAHGVVIG                   A  +CSITFHRAFDCCTT+ VAA+E+L+RLGVDRVLTSGR  SAW+GR  I+RL+EA   RI ++PGAG+T  NV  L+  TGA+E+HVGS CQE VP+T  R+ ++V +G  G G A   + RVS   V  +L
Sbjct:   25 SASQARSGGAHRIELCANLAQGGVTPSAGDIEGALLAVRGSHTRVHVLIRPRPGDFVYSVLEKQVMEKDVSAAVKAGAHGVVIGVAKAXXXXXXXXX------AKDACSITFHRAFDCCTTDEVAAMESLVRLGVDRVLTSGRHESAWDGRAVISRLVEASGGRIGILPGAGVTHGNVKQLLLHTGAKEVHVGSACQEKVPRTALREDATVCVGLVGEGSAAAGLKRVSAGRVCEML 255
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A1T3NS32_9ACTN (PF03932 family protein CutC n=3 Tax=Embleya TaxID=2699295 RepID=A0A1T3NS32_9ACTN)

HSP 1 Score: 187 bits (476), Expect = 1.350e-51
Identity = 108/206 (52.43%), Postives = 135/206 (65.53%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHRQQSSVQLGA 644
            GAHRVELCA+  +GG+TPS+G I+ +++A+     RVHV++RPR GDFVY   E  AM  D++A  A GA GVVIGAL   G++D      L+AAA    S+TFHRAFD  T +P AALE LI LGVDRVLTSG+  S  EG   IARL+     RIVVMPG GIT  N++ ++A TGARE+H  +G     P THR  +    GA
Sbjct:   30 GAHRVELCADLFEGGITPSLGLIETTLAAVEA--IRVHVIVRPRGGDFVYDEYEAAAMRRDVEAIRAAGAQGVVIGALTPEGDLDRPVIEALLAAAG-DLSVTFHRAFDM-TRDPHAALEELIELGVDRVLTSGQDSSVLEGAPLIARLITQAAGRIVVMPGGGITARNIDRVLAATGAREVHFAAGAILESPATHRNPNPYMGGA 231
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: UPI00104146C4 (copper homeostasis protein CutC n=1 Tax=Actinomadura fibrosa TaxID=111802 RepID=UPI00104146C4)

HSP 1 Score: 185 bits (470), Expect = 7.140e-51
Identity = 103/197 (52.28%), Postives = 130/197 (65.99%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GAHRVELCA    GG+TPS+G ++A++ A+  S  RVHV+IRPR GDF++   E  AM HD+      GAHGVVIGAL  +GE+D   T  L+AAA+    +TFHRAFD  T +P AALETL+ LGVDRVLTSG+  S  EG   IA L+     RIVVMPG G+T  N+  ++A TGARE+H  +  +   P  HR
Sbjct:   22 GAHRVELCAALFDGGLTPSLGTVRAALDAV--SSIRVHVIIRPRGGDFIFDEHEVAAMEHDVALVREAGAHGVVIGALTAAGEVDRPVTERLIAAAD-GLPVTFHRAFDM-TADPFAALETLVELGVDRVLTSGQDVSVLEGAPLIAELVRRAGDRIVVMPGGGVTARNIARVVAETGAREIHFAALSEAPSPAVHR 214
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A8J3QX66_9ACTN (PF03932 family protein CutC n=1 Tax=Rugosimonospora africana TaxID=556532 RepID=A0A8J3QX66_9ACTN)

HSP 1 Score: 185 bits (469), Expect = 9.950e-51
Identity = 107/204 (52.45%), Postives = 133/204 (65.20%), Query Frame = 3 
Query:    6 ATQAGLGGAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            A  A  GGA RVELCA    GG+TPSIG I+ +VS++     RVHV++RPR GDF+YS+ E + MV D++AAVA GAHG+VIGAL   G+ID ETT  L+ AA    SITFHRAFD    +P AALE LI LGVDRVLTSG+  S  EG   IA L++    RIVVM G G+ + N+  ++A TG  ELH  +      P  +R
Sbjct:   14 AVAAEQGGADRVELCAALFDGGLTPSIGTIETAVSSVR--RIRVHVIVRPRGGDFIYSSREIETMVRDVRAAVAAGAHGIVIGALTPEGDIDVETTRRLIEAAG-DASITFHRAFDM-VRDPYAALEQLIELGVDRVLTSGQESSVLEGAPLIAELVKRAGDRIVVMAGGGVNERNIARILAETGVHELHFTAMVSADSPALYR 213
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A7W3LZP9_ACTNM (PF03932 family protein CutC n=2 Tax=Actinomadura TaxID=1988 RepID=A0A7W3LZP9_ACTNM)

HSP 1 Score: 184 bits (468), Expect = 1.430e-50
Identity = 101/197 (51.27%), Postives = 129/197 (65.48%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GAHRVELCA   +GG+TP++G ++A+++A+  S  RVH ++RPR GDF+Y   E  AM HD+      G HGVVIGAL  +GE+D   T  L+AAA     +TFHRAFD    +P AALETL+ LGVDRVLTSG+  S  EG   IA L+E    RIVVMPG G+T  N+  ++A TGARE+H  +   E  P  HR
Sbjct:   22 GAHRVELCAALFEGGLTPTLGTVRAALAAV--SSIRVHAIVRPRGGDFIYDEYEVAAMEHDVALLREAGVHGVVIGALTAAGEVDRPVTERLIAAAG-GLPVTFHRAFDMAA-DPFAALETLVDLGVDRVLTSGQEVSVLEGAPLIAELVERAGDRIVVMPGGGVTDRNIARVLAATGAREVHFAALTDEPSPAVHR 214
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A365H0Q2_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura craniellae TaxID=2231787 RepID=A0A365H0Q2_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 1.430e-50
Identity = 105/197 (53.30%), Postives = 129/197 (65.48%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GAHRVELCA   +GG+TPS+G I+A+++A+  S  RVHV++RPR GDF++   E  AM HD+      G HGVV+GAL   G+IDE  T  LVAAA    S+TFHRAFD  T +P AALETL+ LGVDRVLTSG   S  EG   IARL+E    RI VMPG G+   N   ++A TGARE H  +  +EA P   R
Sbjct:   22 GAHRVELCAALFEGGLTPSLGTIRAALAAV--SSIRVHVIVRPRGGDFIFDAHEIAAMEHDVALLREAGVHGVVVGALTPDGDIDEAVTGRLVAAAG-GLSVTFHRAFDM-TADPFAALETLVDLGVDRVLTSGHDVSVLEGAPLIARLVEQAGDRIAVMPGGGLNARNAARVVAATGAREFHFAALSEEASPAVFR 214
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: UPI00082B44A4 (copper homeostasis protein CutC n=1 Tax=Actinomadura hibisca TaxID=68565 RepID=UPI00082B44A4)

HSP 1 Score: 184 bits (467), Expect = 1.990e-50
Identity = 102/197 (51.78%), Postives = 129/197 (65.48%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GAHRVELC+   +GG+TPS+G ++A+++A+  S  RV+V+IRPR GDF+Y   E  AM HD+  A   GAHG+VIGAL   GEID   T  L+AAA     +TFHRAFD    +P AALETLI LGVDRVLTSG+  S  EG   IA L+E    RI+VMPG G+T  N+  ++  TG RE+H  +   E  P  HR
Sbjct:   22 GAHRVELCSALFEGGLTPSLGTVRAALAAV--STIRVNVIIRPRGGDFIYDEHEVAAMEHDVALAREAGAHGIVIGALTADGEIDRAVTERLIAAAG-GLPVTFHRAFDMAA-DPFAALETLIELGVDRVLTSGQEVSVLEGAPLIAELVERAGDRIIVMPGGGVTSRNIGRILEATGVREVHFAALTDEPSPAVHR 214
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: W2F0C2_9ACTN (PF03932 family protein CutC n=3 Tax=Microbispora TaxID=2005 RepID=W2F0C2_9ACTN)

HSP 1 Score: 184 bits (467), Expect = 2.050e-50
Identity = 103/197 (52.28%), Postives = 131/197 (66.50%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GA RVELCA   +GG+TP++G ++A+++A+  S  RVHV+IRPR GDFV+   E +AM  D++A    GAHGVVIGAL   GE+DEE    L+ AA    S+TFHRAFD    +P AALETL+ LGVDRVLTSG+  +A EG   IA L+E    R+VVMPG GIT  N   ++  TGARE+H  +   E  P  HR
Sbjct:   22 GAQRVELCAALFEGGLTPTLGTVEATLAAV--SSIRVHVIIRPRGGDFVFDRYEIEAMERDVEAVREAGAHGVVIGALTPQGEVDEEVAKRLIGAAE-GLSVTFHRAFDMAA-DPFAALETLVALGVDRVLTSGQDSTALEGAPLIASLVERAGDRLVVMPGGGITPRNAGRVVEATGAREIHFAALVDEPSPVVHR 214
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A419HI55_9PSEU (PF03932 family protein CutC n=1 Tax=Pseudonocardiaceae bacterium YIM PH 21723 TaxID=2340915 RepID=A0A419HI55_9PSEU)

HSP 1 Score: 184 bits (466), Expect = 2.690e-50
Identity = 103/197 (52.28%), Postives = 131/197 (66.50%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GA RVELC+    GG+TP++G I+A+++A++G   +VHV+IRPR GDFVY   E  AM HD+  A   G HGVVIGAL   GEID E T  L+ AA+    ITFHRAFD  T +P+AAL+TLI LG++RVLTSG+  S  EG   IA L++    RIV+MPG GIT  NV  ++A TG RELH  +   +  P  HR
Sbjct:   22 GAQRVELCSALFDGGLTPTLGTIRAALAAVSG--IKVHVIIRPRGGDFVYDAHEIDAMEHDLILAREAGVHGVVIGALTAEGEIDREVTERLIKAAD-GLPITFHRAFDM-TVDPIAALDTLIELGIERVLTSGQEVSVLEGAPLIAELVQRAGDRIVIMPGGGITPRNVTRIVAETGVRELHFAALVDQDSPAVHR 214
[Close]
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Match: A0A372JI91_9ACTN (PF03932 family protein CutC n=1 Tax=Actinomadura logoneensis TaxID=2293572 RepID=A0A372JI91_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 2.780e-50
Identity = 107/197 (54.31%), Postives = 130/197 (65.99%), Query Frame = 3 
Query:   27 GAHRVELCANSAQGGVTPSIGDIKASVSALAGSHTRVHVLIRPRPGDFVYSTLEKQAMVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRAFDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRIVVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHR 617
            GA RVELCA    GG+TP++G ++A+++A+  S  RVHV+IRPR GDF++   E  AM HD+ AA   GAHGVVIGAL   GEID   T  L+ AA    S+TFHRAFD    +P AAL+TLI LGVDRVLTSG+  SA EG   IA L+     RIVVMPG GIT  NV  ++A TGARE+H  +   E  P  HR
Sbjct:   22 GADRVELCAALFDGGLTPTLGTVRAALAAV--SSIRVHVIIRPRGGDFIFDEHEIAAMEHDVVAAREAGAHGVVIGALTPEGEIDRPVTERLMKAAG-GLSVTFHRAFDMAA-DPFAALDTLIDLGVDRVLTSGQDSSALEGAPLIAELVRRAGDRIVVMPGGGITPRNVARVVAETGAREIHFAALTPEPSPAVHR 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9310.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0U1_9PHAE1.060e-7659.07Copper homeostasis protein cutC homolog n=1 Tax=Ec... [more]
A0A1T3NS32_9ACTN1.350e-5152.43PF03932 family protein CutC n=3 Tax=Embleya TaxID=... [more]
UPI00104146C47.140e-5152.28copper homeostasis protein CutC n=1 Tax=Actinomadu... [more]
A0A8J3QX66_9ACTN9.950e-5152.45PF03932 family protein CutC n=1 Tax=Rugosimonospor... [more]
A0A7W3LZP9_ACTNM1.430e-5051.27PF03932 family protein CutC n=2 Tax=Actinomadura T... [more]
A0A365H0Q2_9ACTN1.430e-5053.30PF03932 family protein CutC n=1 Tax=Actinomadura c... [more]
UPI00082B44A41.990e-5051.78copper homeostasis protein CutC n=1 Tax=Actinomadu... [more]
W2F0C2_9ACTN2.050e-5052.28PF03932 family protein CutC n=3 Tax=Microbispora T... [more]
A0A419HI55_9PSEU2.690e-5052.28PF03932 family protein CutC n=1 Tax=Pseudonocardia... [more]
A0A372JI91_9ACTN2.780e-5054.31PF03932 family protein CutC n=1 Tax=Actinomadura l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9310contigH-paniculata_contig9310:2149..8443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.4
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog356851.JOAN01000003_gene1575
Preferred namecutC
KEGG koko:K06201
Hectar predicted targeting categoryother localisation
GOsGO:0006873,GO:0006875,GO:0006878,GO:0008150,GO:0009987,GO:0010035,GO:0010038,GO:0019725,GO:0030003,GO:0042221,GO:0042592,GO:0046688,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0098771
EggNOG free text desc.Participates in the control of copper homeostasis
EggNOG OGs2GKI8@201174,4DFAF@85008,COG3142@1,COG3142@2
Ec32 ortholog descriptioncopper homeostasis protein
Ec32 orthologEc-26_006050.1
COG Functional cat.P
Best tax levelMicromonosporales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons7
Model size1847
Cds size546
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.9660137-UTR-H-paniculata_contig9310:2148..32521622931158.9660137-UTR-H-paniculata_contig9310:2148..3252Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 2149..3252 -
1691481616.9650528-UTR-H-paniculata_contig9310:2148..32521691481616.9650528-UTR-H-paniculata_contig9310:2148..3252Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 2149..3252 -
1622931159.0728815-UTR-H-paniculata_contig9310:7037..70401622931159.0728815-UTR-H-paniculata_contig9310:7037..7040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 7038..7040 -
1691481617.0373828-UTR-H-paniculata_contig9310:7037..70401691481617.0373828-UTR-H-paniculata_contig9310:7037..7040Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 7038..7040 -
1622931159.098642-UTR-H-paniculata_contig9310:7540..76691622931159.098642-UTR-H-paniculata_contig9310:7540..7669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 7541..7669 -
1691481617.0462012-UTR-H-paniculata_contig9310:7540..76691691481617.0462012-UTR-H-paniculata_contig9310:7540..7669Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 7541..7669 -
1622931159.115177-UTR-H-paniculata_contig9310:8378..84431622931159.115177-UTR-H-paniculata_contig9310:8378..8443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 8379..8443 -
1691481617.0579357-UTR-H-paniculata_contig9310:8378..84431691481617.0579357-UTR-H-paniculata_contig9310:8378..8443Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9310 8379..8443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931158.980721-CDS-H-paniculata_contig9310:3252..33411622931158.980721-CDS-H-paniculata_contig9310:3252..3341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 3253..3341 -
1691481616.980414-CDS-H-paniculata_contig9310:3252..33411691481616.980414-CDS-H-paniculata_contig9310:3252..3341Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 3253..3341 -
1622931159.0032835-CDS-H-paniculata_contig9310:3933..40771622931159.0032835-CDS-H-paniculata_contig9310:3933..4077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 3934..4077 -
1691481616.9915369-CDS-H-paniculata_contig9310:3933..40771691481616.9915369-CDS-H-paniculata_contig9310:3933..4077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 3934..4077 -
1622931159.0176938-CDS-H-paniculata_contig9310:5195..53081622931159.0176938-CDS-H-paniculata_contig9310:5195..5308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 5196..5308 -
1691481617.0025475-CDS-H-paniculata_contig9310:5195..53081691481617.0025475-CDS-H-paniculata_contig9310:5195..5308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 5196..5308 -
1622931159.0313315-CDS-H-paniculata_contig9310:6194..63371622931159.0313315-CDS-H-paniculata_contig9310:6194..6337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 6195..6337 -
1691481617.0129142-CDS-H-paniculata_contig9310:6194..63371691481617.0129142-CDS-H-paniculata_contig9310:6194..6337Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 6195..6337 -
1622931159.0536885-CDS-H-paniculata_contig9310:6980..70371622931159.0536885-CDS-H-paniculata_contig9310:6980..7037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 6981..7037 -
1691481617.0275884-CDS-H-paniculata_contig9310:6980..70371691481617.0275884-CDS-H-paniculata_contig9310:6980..7037Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9310 6981..7037 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9310.17095.1prot_H-paniculata_contig9310.17095.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9310 3253..7037 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9310.17095.1

>prot_H-paniculata_contig9310.17095.1 ID=prot_H-paniculata_contig9310.17095.1|Name=mRNA_H-paniculata_contig9310.17095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MVHDIKAAVATGAHGVVIGALLKSGEIDEETTATLVAAANRSCSITFHRA
FDCCTTEPVAALETLIRLGVDRVLTSGRAGSAWEGRDTIARLMEAGRRRI
VVMPGAGITQHNVNPLMARTGARELHVGSGCQEAVPQTHRQQSSVQLGAS
GGGAGDVMMRVSPDLVSNLLVAMNTSTTAGS*
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mRNA from alignment at H-paniculata_contig9310:2149..8443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9310.17095.1 ID=mRNA_H-paniculata_contig9310.17095.1|Name=mRNA_H-paniculata_contig9310.17095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6295bp|location=Sequence derived from alignment at H-paniculata_contig9310:2149..8443- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCCGCGACCCAGGCTGGCCTAGGAGGTGCGCATCGAGTCGAACTCTGC
GCCAACTCAGCCCAGGTACGTCCGTTAAACGCTGTCTCGAGAGATATCGT
AGGATATTTTTGCAGGAGCTCTTGCCTGTACCTATCTGAGCTGTACTACC
CCCTACAAACTTCATTTGGTGTATGTCAAAAGGGATCATTATTCGACCTT
CTAAATACCCGTGTTCCTCCTTGTGCATACAATTGTACAGCGGTGGTAAG
CAGGCTTCTACAAAGACATGCCCTCAATGACATTTGTAGTGCGCAAATCA
ATTTTTCTAAAACATTAGTCCACCGTTCAGGTTGGGCCTTGGCTGCAAGG
TACGCACAAATTGGGTATCTTGTTCGAGTACCTCCTCTCTCTCCCTCGAT
GGTCGACAAATGGACATACCAACCGAAAATCGATAGAATTATTATGGAAC
GCTGCCAACGAACGGAGCTACCAAATAGAAACAGGCGAGCTATGGTCAAT
GATATGCTATAGATTGGGTGTGGCGGTTGAAGTCTATATTTGAAAGTATC
CCAAACAGAAGTAGAGAAGTCAGCCTGAGCCTCACCCTCTCTCTTGCATT
GCAACACCCGTATCATGGGTTATTATCACTGAACAACGTGCCGTGTGTAT
GGACGCGTTCGCTTTCCTGGTTCAAGGGTGACTCCCGTCCTGCGCTGTGT
GTCAACAGTCCTGGCGGGGGGCCACCACCTGACATGTTCCCTCTGCTCCA
CATAACATGGTAACCCTTCCTCAGGGAGGGGTTACACCATCGATCGGAGA
CATCAAGGCAAGTGTGTCCGCCTTGGCAGGATCCCATACGAGGGTGCATG
TGCTGATTCGACCGCGTCCGGGAGACTTCGTTTATTCGACCCTCGAGAAG
CAGGTGAATCGGGCATATCAAGTATCGCTCAGAGCCCTAGTTATGTGTAT
CTCATCTGCCAGAGCAGAACTTACACCAACGTAAAATGAAAACCTACATA
AGAGTAAATATGATGAAACTATTCAGTTTTGATCCACTGAATAGAACAGG
CGGGAAGAGGGTATGTGGCAAACGTCACCATTCTTCGTGTCATACTCCAG
AAATCCAGATCTACGGTAGACCTCCCAAGCTCCTACGCCCGCCATTGTCT
GCTGCATTTGGCGATACACTGCTATATGAGGCTGAGTGTCTGCGTGTTTT
TTCGACACCAAGGTTGCGATACTCAAGCCAAAGCACCAACAGGTAACCCT
TCTACACTGTGACATAAGCGTTACACGACGAACGTGATTTCGTAGAAGTT
GTCCCCAAACGACAGGAGACGGAAGCAAGCCGATTTCGAAAATAGCAAAG
TTTGCGTTATCCGCACCCAGATAACTAACCTGCGCGCTCCGTGTGGTTCA
CAGGCAATGGTGCATGATATTAAGGCGGCGGTTGCGACCGGGGCTCATGG
TGTCGTTATTGGGGTGAGACCTTAGTACTGTCAGCAGCTGCGGTTGAGAG
CAAGCTTGGTCTTTTTCTTGATGTGCCTGGCAGATGGATTCGTTATCTCT
CGTGTCCCTACGCTGCGTATGTTCGTCGACCAACTTCGTTTGAGTTTGTG
AATCTACTAGGTGCACGTCCAGGCAGTCTACTTACCAGTGGTCAGTTTGC
CTATGCAGAATAGGACTAAATTCTCCAGGAAAACGTGGACCACAGTAGTA
CGGTACGACAGACTTCACAATCGACGACGAGCCCAGTAGCGCTGATTGAT
TTTGAAACATTTTGCTCTGGCGAATAGCAGAAAAAGCCATTTTCCTCTTG
TCCAGATGAGTATTACCATCTTCACGCGCTGTTGTCATCTTCCGCTCACT
TGGAAATGCACAATATCCAAGCACAGTCATTGATGCGCCCGTATTTTTTA
TTCCTGTTCATTCGTTAATATCCAAATCCATGACCCACGCACAACGGCCT
CTGCTCTCGTATGTGTCACGTAGATTCATTCTAGAATTTAAGCGAGCACG
GGGGCAATTTTTTTTCCCGATACGAGCATTATCATCCTCATCACCTACTG
GTATTCAATGTGCATACGAGGTATTATCTACCCGTATCATGACCGCTCCT
GCGCAGGCCCTTCTCAAGAGTGGCGAGATCGATGAGGAAACAACGGCGAC
ATTGGTAGCGGCCGCGAATCGCTCTTGCAGCATAACCTTCCACCGAGCCT
TTGATTGTTGCACCACAGAACCCGTGGCTGCCTTGGAAACTCTCATCAGG
TGTGTCATGCTCTACTCCGACTAGTACACACGCCGTAGTGCTTCCGCCCC
AACAAGATTATCAATATCCCACACATACAACGACTAATTAGTCGCACTTA
TTCAGCTTTAACCGACTAATTCCCAAAACGGAACCGACCAAGTCGACTGA
GTCCACTGTTTCTCAAACATGAAATCGATTATGGTCGACTGAATTGACTA
ATTCTCGGTATGAAAACGACTATTAGTCGCCTCAGCCGACTAAACCGACT
AATTCCAAAAAGTGAAACCGACTATAGTCGACTGAGCCGGCTAATTCCCA
AAGTGGAATATAGTCGACTAAGCCGACTAATTCCCAAAACGGAAAGCGAC
TACAGTCGACAAAGTCGACTATTTCCCCAAAAGTGCCTACGACGAAACAA
ACGACCCCACTTCAAGGAATCTGAGTCATAGTGGTTCCATGTGTGCAATA
TTCTAAAAAGCTCAATGTCAAGTTTTTTAAGCTGGCGTCCAGCTCGTTTT
GTGTAACTGAAACAGAGCGCCGCGCATGTGCTCCAAGAGAAAGTTATTGC
TATCTATATATTCCCCTCCCTCCTGCCGTTGAGCTATTGGGGTTTCAAAC
CACGACCGAGCCTACACGTCTGGGTTGGTCACGTTATGCAGAATTCTGTT
GCTGCTTCGTAGCAGTTCGCATAGGCACCGGAGGGATTAGACAGTTGTTG
AAGCTATTATACCGCCATCCCACCGTTATTTCCGTTATCGGGTGCATACT
GTTTACTACTTGTATGCGAGTGTGCCCGTCCTCGACGAGAAAAAATACAG
CCACTCTTGCCACTGTGTGTGATGAAACTTGACTCATCTGACACGGCACT
CTCATTGCTGTGCTTGTCCGGATTTGATGTTGAAGGCTTGGGGTCGATCG
TGTCTTGACATCCGGAAGGGCGGGCAGTGCGTGGGAAGGACGGGATACGA
TTGCTAGGTTAATGGAAGCAGGGCGTCGTCGCATCGTGGTCATGCCAGGT
ATAATCACACGCTTACTCTTCACTATCAATGTATATATCATATTATGTGC
ATTACCACATTCACGAACGGCTCAAAAACGGTACGTCACACATAGGTAAA
ACAAGAAATAGGTGAGACCCCACAACAAATAACTTTCTTGCTATTATTTT
TCTTGTTATTATTTTTCTTGTTATTATTATTTAATGTTTATATCTTTCAT
CAGATGTTAACCTAATGGTGTTATTTTGATTTCTTTAAATCACACGCTTA
GACTTACACAGAGAATAGAAGTCTCTGCCAACGCTTCAGTTCAGTAGTGC
CGGGAGAAAAGAGTCGCCGGTGCAGATGGCGCTGGTGCGCTAGAGAAATT
GGGGTGCTTTAAGCAAAAGCCCTGTAATATGTTGTCGAGATTGAAATATA
TTACTTGCATACGGTGCCCAACACGATGGTCGGAAACTTAAACTTCGCCA
TTGCGGCTGGGATCGTTGCCTGTTGATATCACATGTCCACGAACAAGAAA
AAGGAGAATGAATATCAAGCTTACGCTGACTCTTTTCACTGCTGATTCGG
CGCCGCTCTGCTTCTCTCTTCGCTTGCCCATGTATCATGATCAGCAGTCC
ACTCGACGCCACTCCTGGATGCAGTGGTGCAGAATACTGTCTTTTAATGC
GTCCAAGCCGCAGGAATTTTGGACCCCTGCTAAGCGACTTCAGGGACTTT
TAAGCAAATTCAAAATACTGGACGTTAGTAGTGAGGCGCTCCCCAAAATG
AAATCCAAGTGTCTCATGAGAAAACGTTGGATCCGGTGTGAACCTCTATA
CATTTTGAAGACTCTTTATACGCGGCCTTTTACCACGCAGAGGCGTCATA
CCGAGCCACTCGCCTTCAAGCGCTTTCAAATGAAGAGAACTATCGCTATT
GTCCATTCTGCTCCTTCACTATTAAATTGTTGTTTCTAAAATCAATATTT
TCCTGTCCTTAGCGCTCCAAGTGGGTGCTGTCGTCAGCATCTCAATTGTC
TAGGGAGACGTCGTTAGTGCCCTGCGCTACGTGTTTCGTGAGGTAAAAGC
TCGCTGTCATTCACAGGCGTGACATTGACGTTTTGACGTGTTGGTAATGG
ATGGTTTGAACTCCAGGTGCTGGCATAACGCAACACAATGTCAATCCACT
AATGGCCAGGACCGGGGCCCGAGAGCTACACGTGGGGTCCGGTTGTCAGG
AAGCCGTTCCGCAGACCCATCGTCAGCAGTCTTCTGTACAGTTGGGAGCT
TCTGGTGGAGGTAGGAGGTTGTAGTATATGTGTCGTTAGTGTTGTGCACG
CACACGTTTTTGTTTGTGGTGTGTATGTGCACGGTATATCTTTCGCTCTT
TTTGCGCAACGGGTATCTTATGCGAAGATGTCTGCGAGGCTATTCTGCAG
ACTACTGTACGGTCGTTTGTGCAGTGTGAACTTGATATTATAACTCGACA
ACTGTATTGTAGTGTAGGGAGCAATGGGCCAAGAGTTGCGAGATTTCGCA
CGTGGCAGGCATTCCGCTTGTCCTCTACACCTCGCCAATACCGACTTTTG
TTTCTCAGTTGTATAAGATGAAATTTATTTGTGTGCCCGAGAGCTTTTGG
CCGGTTCTGATTTTGTTCATGTTGAAGCTTTCCGTTAACGTAAAATTCCT
GGATAATCGGGCCGTTTGCGAAGGCCGCCTAATTGGCTACGTTGGACTTC
ACCTGCCCCGAGGCCTGATGCGCGGTGCACTCGGCCTTCGCATTGTAAAC
TTTTAGTCACGAAAACAAGGTCGTTTTTCGACATGTGACATCCTAATCCG
GGCGCGTTTCTTTTCGTGGCGGTGTGTGTGTGTGTGCCTAATGTTTTTTC
AGGTGCTGGTGACGTGATGATGCGTGTATCCCCAGATCTTGTGTCAAATT
TGCTGGTGGCAATGAATACTTCGACAACAGCAGGTTCTTAACCATCTTTC
CGGAGCTTTGATTTATTGTACTGCCAGCACGACAGTGCCTCCTGGTACAA
GGAGGCAGCGCGGTAGTCTGTTTCTAGAGATAAAGGCCGTGAGTCGGGTT
AATCTACACCACACCAGTTGACTCCAATAGCATGTTCTAATGTGCCGCAG
TTACCTGTCGATTGCCCCAGCATGGCCTGGTAGTACATGCGCACAAGACT
GTATCCAGCACAAACCCGAACTATTTCGCTCGGCACCTTCCACTAGAGGT
GGATTTGATTACGTTCCACCACGGCGAATTTTGCCGTAGGAGCCTCGACC
TTTTGCGTACATGTTCATTGGTGGAGTAGAAAGCCACTTAGACTACCTAA
TTATATCACTGTTCGCAGCCTCATATATATCCTCAACCGCGCCGAAGATA
AAATTCAAGCTGACGTACTGCCACACAATCAACAACGCAGAGATGTCGCA
CAAAGTTCACCACTCCACGTGAGCGCATGCCCTTGTAGCGCGTGCCTCGA
CTAAACATACATGCCACGCGTTTTCAACACAGCCTCAATTATCCACAGGT
AGTTGCTGCAGCAGACGGCTTTTTCTTTGCTTGATGTCTAGTATTCATTG
GCGTCTCCGCGATCTCATGTCGACCCACTGAACGACGTGAAGGTGTCGGT
CGTCCTGGTGTTGTAAGGTGAAAATGTGCGGGAGCAAGACGAATACAATG
GCGAGGAAGTAAGGTGCTGCAATTGCACAAGAAAGCCTGACGAAGTGTAT
ACTTGTAGTTTACAATGTAGAACACCCGACGTGATGAGTTTTTTTCCCTA
AAAATATTCATCATCCGGGGGATGGTGTTCAAGGAGGGGGGTTGTATATG
CACCGTATCCCCTGTGATATTATGGGGGAGTGGTAGACGGGGGAGACGAT
AGCATGGCATGCGGTAGTATGCCACACCGACTACGCAGGCAGCACGGAGG
GGTGATGGGTACAGTGTTCGTTTGTATTACACATTCCACGAATACAGAAG
CGGAATAATAAGGCATTGGTGGCATTGTTTTTTCTGAGAGTATAATGTTC
CCGTACCCGCTGCCTGGGTTCGGTTGGGGGTTGATAATAAGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9310:2149..8443-

>mRNA_H-paniculata_contig9310.17095.1 ID=mRNA_H-paniculata_contig9310.17095.1|Name=mRNA_H-paniculata_contig9310.17095.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1092bp|location=Sequence derived from alignment at H-paniculata_contig9310:2149..8443- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGCATGATATTAAGGCGGCGGTTGCGACCGGGGCTCATGGTGTCGT
TATTGGGATGGTGCATGATATTAAGGCGGCGGTTGCGACCGGGGCTCATG
GTGTCGTTATTGGGGCCCTTCTCAAGAGTGGCGAGATCGATGAGGAAACA
ACGGCGACATTGGTAGCGGCCGCGAATCGCTCTTGCAGCATAACCTTCCA
CCGAGCCTTTGATTGTTGCACCACAGAACCCGTGGCTGCCTTGGAAACTC
TCATCAGGCCCTTCTCAAGAGTGGCGAGATCGATGAGGAAACAACGGCGA
CATTGGTAGCGGCCGCGAATCGCTCTTGCAGCATAACCTTCCACCGAGCC
TTTGATTGTTGCACCACAGAACCCGTGGCTGCCTTGGAAACTCTCATCAG
GCTTGGGGTCGATCGTGTCTTGACATCCGGAAGGGCGGGCAGTGCGTGGG
AAGGACGGGATACGATTGCTAGGTTAATGGAAGCAGGGCGTCGTCGCATC
GTGGTCATGCCAGGCTTGGGGTCGATCGTGTCTTGACATCCGGAAGGGCG
GGCAGTGCGTGGGAAGGACGGGATACGATTGCTAGGTTAATGGAAGCAGG
GCGTCGTCGCATCGTGGTCATGCCAGGTGCTGGCATAACGCAACACAATG
TCAATCCACTAATGGCCAGGACCGGGGCCCGAGAGCTACACGTGGGGTCC
GGTTGTCAGGAAGCCGTTCCGCAGACCCATCGTCAGCAGTCTTCTGTACA
GTTGGGAGCTTCTGGTGGAGGTGCTGGCATAACGCAACACAATGTCAATC
CACTAATGGCCAGGACCGGGGCCCGAGAGCTACACGTGGGGTCCGGTTGT
CAGGAAGCCGTTCCGCAGACCCATCGTCAGCAGTCTTCTGTACAGTTGGG
AGCTTCTGGTGGAGGTGCTGGTGACGTGATGATGCGTGTATCCCCAGATC
TTGTGTCAAATTTGCTGGTGGCAATGAATACTTCGACAACAGCAGGTTCT
TAAGTGCTGGTGACGTGATGATGCGTGTATCCCCAGATCTTGTGTCAAAT
TTGCTGGTGGCAATGAATACTTCGACAACAGCAGGTTCTTAA
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