mRNA_H-paniculata_contig9301.17085.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9301.17085.1
Unique NamemRNA_H-paniculata_contig9301.17085.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: D7G4P3_ECTSI (Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P3_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 2.900e-31
Identity = 58/90 (64.44%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    4 GDSGPQEDPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE 273
            GD GPQ DPE H Q+ Q +   ++RITVP+ G GYTIP  N GGG    L EICA GFRNPWRCSFDR+ D LYCGDVGHT VE I  VE
Sbjct:  324 GDGGPQTDPENHSQDTQTMLGAMMRITVPSDGDGYTIPSGNYGGG---ALDEICAIGFRNPWRCSFDRENDNLYCGDVGHTFVEEIDLVE 410          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: A0A6H5JZF5_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF5_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.980e-31
Identity = 58/90 (64.44%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    4 GDSGPQEDPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE 273
            GD GPQ D   H Q+ Q++   ++RITVP+ GSGYTIP  N GGG    L EICA GFRNPWRCSFDR+TD LYCGDVGHT VE I  VE
Sbjct:  261 GDGGPQTDYNNHAQDTQSMLGAMMRITVPSDGSGYTIPSGNYGGG---ALDEICAIGFRNPWRCSFDRETDDLYCGDVGHTFVEEIDLVE 347          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: D7G6T7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T7_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.690e-29
Identity = 56/90 (62.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:    4 GDSGPQEDPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE 273
            GD   Q DPE HGQ+  NL  +++RI+VP  G+GY IP  NL    +  LPEICA GFRNPWRCSFDR+TD LYCGDVGHT VE I  VE
Sbjct:  261 GDGASQTDPENHGQDTTNLLGSVMRISVPADGTGYEIPTGNLA---SPALPEICASGFRNPWRCSFDRETDELYCGDVGHTLVEEIDIVE 347          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: D7G962_ECTSI (GSDH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G962_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 5.280e-23
Identity = 49/90 (54.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    4 GDSGPQEDPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE 273
            GD GPQ DP  H Q+   +   ++RI+VP  G+GYTIP  N  G  A    EICA G RNPWRCSFDR  D LYCGDVG  + E I  VE
Sbjct:  252 GDGGPQTDPFNHSQDETTMLGAMMRISVPADGTGYTIPPGNYHGSKA----EICAIGLRNPWRCSFDRLNDDLYCGDVGQISAEEINLVE 337          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: D7FJN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.370e-21
Identity = 54/94 (57.45%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    1 MGDSGPQEDPEQHGQNLQNLHSTIVRITVPTS-GSGYTIPDNN--LGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE 273
            MGDSGPQ D    GQ+   LH +I+RI V +   SGY+IP  N   GGGG     EICA G RNP+RCSFDR  D LYCGDVGH  VESI  +E
Sbjct:  313 MGDSGPQLDTFDRGQDPNILHGSIIRIGVSSEMESGYSIPSGNPFSGGGGR---GEICAQGMRNPYRCSFDRLNDDLYCGDVGHLDVESIKKIE 403          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: A0A6H5KT40_9PHAE (GSDH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT40_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.240e-21
Identity = 44/83 (53.01%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   25 DPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE 273
            DP  H Q+   +   ++RI+VP+ G+GYTIP  N  G  A    E+CA G RNPWRC FDR  D LYCGDVGHT VE I  +E
Sbjct:  209 DPGNHSQDETTMLGAMMRISVPSDGTGYTIPPGNYPGAKA----EVCAIGLRNPWRCGFDRLNDNLYCGDVGHTLVEEINLIE 287          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: A0A7X3UCF3_9CHLR (PQQ-dependent sugar dehydrogenase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7X3UCF3_9CHLR)

HSP 1 Score: 90.5 bits (223), Expect = 1.070e-19
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 MGDSGPQEDPEQHGQNLQNLHSTIVRITVP--TSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESI 261
            +GD G   DP  HGQN Q L  TI+RI V   T+G+ Y IP +N    G   LPEI AYG RNPWR SFD +T +L+ GDVGH A E I
Sbjct:  113 LGDGGGDGDPRGHGQNAQTLLGTIIRIDVRGVTAGAPYRIPPDNPFVDGEDGLPEIWAYGMRNPWRVSFDPETGLLWAGDVGHYAREEI 201          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: A0A7X4AH30_9CHLR (PQQ-dependent sugar dehydrogenase n=3 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7X4AH30_9CHLR)

HSP 1 Score: 90.5 bits (223), Expect = 2.320e-19
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 MGDSGPQEDPEQHGQNLQNLHSTIVRITVP--TSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESI 261
            +GD G   DP +HGQN Q L  TI+RI V   T+G+ Y IP +N    G   LPEI AYG RNPWR SFD  T +L+ GDVGH A E I
Sbjct:  207 LGDGGGDGDPRRHGQNAQTLLGTIIRIDVRGVTAGAPYRIPPDNPFVDGEDGLPEIWAYGMRNPWRVSFDPATGLLWAGDVGHYAREEI 295          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: UPI001905084D (PQQ-dependent sugar dehydrogenase n=1 Tax=Luteolibacter pohnpeiensis TaxID=454153 RepID=UPI001905084D)

HSP 1 Score: 89.0 bits (219), Expect = 1.170e-18
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 1
Query:    1 MGDSGPQEDPEQHGQNLQNLHSTIVRITV--PTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTV 270
            +GDSGPQ DP+ HGQ+L  ++  I+RI V  P  G  Y IP +N   G A  LPEI AYGFR P+R S+DR+T  L+ GDVG   +E +  V
Sbjct:  340 LGDSGPQRDPQGHGQDLGVMYGKILRIDVDHPAEGKNYGIPADNPFVGKAGALPEIWAYGFREPYRFSWDRETGDLWVGDVGQDQIEEVSIV 431          
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Match: A0A848XMM9_9BACT (BIG2 domain-containing protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A848XMM9_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 2.080e-18
Identity = 47/86 (54.65%), Postives = 57/86 (66.28%), Query Frame = 1
Query:    4 GDSGPQEDPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACTLPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESI 261
            G S  + D  ++GQNL+N +ST++R+ V  SGS Y +P +N   G A TLPEI AYG RNPWR SFDR T  LY GDVG  A E I
Sbjct:  260 GTSAGEADEPRNGQNLENFYSTMLRLDVD-SGSPYGVPSDNPFLGDASTLPEIWAYGLRNPWRFSFDRVTGDLYIGDVGAKAWEEI 344          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9301.17085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4P3_ECTSI2.900e-3164.44Glucose sorbosone dehydrogenase n=1 Tax=Ectocarpus... [more]
A0A6H5JZF5_9PHAE4.980e-3164.44GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G6T7_ECTSI1.690e-2962.22WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G962_ECTSI5.280e-2354.44GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJN8_ECTSI2.370e-2157.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT40_9PHAE4.240e-2153.01GSDH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7X3UCF3_9CHLR1.070e-1953.93PQQ-dependent sugar dehydrogenase n=1 Tax=Dehaloco... [more]
A0A7X4AH30_9CHLR2.320e-1953.93PQQ-dependent sugar dehydrogenase n=3 Tax=Dehaloco... [more]
UPI001905084D1.170e-1850.00PQQ-dependent sugar dehydrogenase n=1 Tax=Luteolib... [more]
A0A848XMM9_9BACT2.080e-1854.65BIG2 domain-containing protein (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9301contigH-paniculata_contig9301:8941..9447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3.2e-27
Seed eggNOG ortholog2880.D7G4P3
KEGG rclassRC00194
KEGG koko:K04618,ko:K08254,ko:K11244,ko:K20929
KEGG ReactionR01098
KEGG Pathwayko00052,ko04011,ko04139,map00052,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC1.1.3.9,1.2.3.15,3.2.1.59
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size276
Cds size276
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931157.7357163-CDS-H-paniculata_contig9301:8940..90681622931157.7357163-CDS-H-paniculata_contig9301:8940..9068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9301 8941..9068 -
1691481616.4478536-CDS-H-paniculata_contig9301:8940..90681691481616.4478536-CDS-H-paniculata_contig9301:8940..9068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9301 8941..9068 -
1622931157.7511392-CDS-H-paniculata_contig9301:9299..94471622931157.7511392-CDS-H-paniculata_contig9301:9299..9447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9301 9300..9447 -
1691481616.4654672-CDS-H-paniculata_contig9301:9299..94471691481616.4654672-CDS-H-paniculata_contig9301:9299..9447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9301 9300..9447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9301.17085.1prot_H-paniculata_contig9301.17085.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9301 8941..9447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9301.17085.1

>prot_H-paniculata_contig9301.17085.1 ID=prot_H-paniculata_contig9301.17085.1|Name=mRNA_H-paniculata_contig9301.17085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
MGDSGPQEDPEQHGQNLQNLHSTIVRITVPTSGSGYTIPDNNLGGGGACT
LPEICAYGFRNPWRCSFDRQTDVLYCGDVGHTAVESIYTVE*
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mRNA from alignment at H-paniculata_contig9301:8941..9447-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9301.17085.1 ID=mRNA_H-paniculata_contig9301.17085.1|Name=mRNA_H-paniculata_contig9301.17085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig9301:8941..9447- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGACAGTGGACCGCAGGAAGACCCCGAGCAGCACGGCCAAAACCT GCAAAATTTGCACTCCACCATCGTTCGTATCACCGTCCCCACAAGCGGCA GTGGCTACACCATCCCTGATAACAACTTGGGAGGTGGAGGTGCGTGTAGT TATTTTACGACGGATTATGCATTGCCGGTTGGACCATTCTGATCTTGTTT AACAGCATGACACGCTTGCGGTACAAAAACGGGAGTAAAAAATTGAGCTC CACTTTCTCATTTTGCACATACTAGAAAAATTGGACAAGAAGCGTCTTCT GGACTAAATCTGTGCTCTTGAGGGTGCCTAATGTTGCCTTGCGTGTCATG CGGCTGCGCTGATTGTTTTGCTTGGGCAGCTCTTCCCGAGATTTGTGCGT ACGGTTTCCGGAACCCCTGGCGGTGCTCCTTCGACAGGCAGACGGATGTG CTTTATTGCGGTGACGTGGGTCACACTGCAGTGGAGTCCATTTACACTGT CGAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9301:8941..9447-

>mRNA_H-paniculata_contig9301.17085.1 ID=mRNA_H-paniculata_contig9301.17085.1|Name=mRNA_H-paniculata_contig9301.17085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig9301:8941..9447- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGACAGTGGACCGCAGGAAGACCCCGAGCAGCACGGCCAAAACCT
GCAAAATTTGCACTCCACCATCGTTCGTATCACCGTCCCCACAAGCGGCA
GTGGCTACACCATCCCTGATAACAACTTGGGAGGTGGAGGTGCGTGTAAT
GGGAGACAGTGGACCGCAGGAAGACCCCGAGCAGCACGGCCAAAACCTGC
AAAATTTGCACTCCACCATCGTTCGTATCACCGTCCCCACAAGCGGCAGT
GGCTACACCATCCCTGATAACAACTTGGGAGGTGGAGGTGCGTGTACTCT
TCCCGAGATTTGTGCGTACGGTTTCCGGAACCCCTGGCGGTGCTCCTTCG
ACAGGCAGACGGATGTGCTTTATTGCGGTGACGTGGGTCACACTGCAGTG
GAGTCCATTTACACTGTCGAGTAACTCTTCCCGAGATTTGTGCGTACGGT
TTCCGGAACCCCTGGCGGTGCTCCTTCGACAGGCAGACGGATGTGCTTTA
TTGCGGTGACGTGGGTCACACTGCAGTGGAGTCCATTTACACTGTCGAGT
AA
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