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Homology
BLAST of mRNA_H-paniculata_contig93.17077.1 vs. uniprot
Match: D8LTK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK2_ECTSI) HSP 1 Score: 120 bits (302), Expect = 3.200e-29 Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 1
Query: 1 VQEKRKVCPTCEVEYRKPRTWTGVRKEFLKRLEKCEKSKQAALGAAIAKQEQEQEFITRSVTPTSQRWHE----DGVFWEDVEDDFMSRLQEDALRRQISLQSRSKSLHPDCTFRTKVSRASERFVEKSSWSGAHQAIIMTDAAYPA 429
V+EKRK+C CE EYRKP+TW VRK+FL R+E ++SK+ A+ AA + R+ S R ++ + +FWED+EDDF+ RLQEDA RRQ SL+SRS +L+ D TFR +S ASER V++S+W+G+ ++ T PA
Sbjct: 383 VEEKRKICXNCEAEYRKPKTWASVRKDFLNRVEAFQESKREAVQAATQSR-------MRTFALGSHRSYDGAERERLFWEDIEDDFVYRLQEDAARRQESLESRSAALYQDWTFRPTLSAASERVVDESAWAGSFSELLYTFRLSPA 522
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 124.8 |
| Seed ortholog evalue | 3.3e-26 |
| Seed eggNOG ortholog | 2880.D8LTK2 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2AZKF@1,2RZZN@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-28_003770.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 429 |
| Cds size | 429 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig93.17077.1 >prot_H-paniculata_contig93.17077.1 ID=prot_H-paniculata_contig93.17077.1|Name=mRNA_H-paniculata_contig93.17077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
VQEKRKVCPTCEVEYRKPRTWTGVRKEFLKRLEKCEKSKQAALGAAIAKQ
EQEQEFITRSVTPTSQRWHEDGVFWEDVEDDFMSRLQEDALRRQISLQSR
SKSLHPDCTFRTKVSRASERFVEKSSWSGAHQAIIMTDAAYPA back to topmRNA from alignment at H-paniculata_contig93:38664..41895- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig93.17077.1 ID=mRNA_H-paniculata_contig93.17077.1|Name=mRNA_H-paniculata_contig93.17077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3232bp|location=Sequence derived from alignment at H-paniculata_contig93:38664..41895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAAGAAAAACGCAAGGTTTGTCCAACCTGTGAAGTGGAATACCGAAA
GCCGAGGACCTGGACAGGCGTAAGAAAGGTGAAAGGCGCACGGTGACTGC
CAAACTTGGTTAGTCGAGGGACGTGTGGCTGTGCGACTACGGTTGTAGTT
TGCTCCAGCAGTATTCCCAACGAGGGCGACTTATCAATGCTAAGCGGCAC
ATCTTGTATGTGACAATATGACGTAGTGAAGGTCTGTTACCCCTCAAGAT
GCCTATATCTCGCTGTCGCTGGTGGTGAGCGATTTGGGATAAAACTTGTC
ACTCATCGGAACAACCGTAGCACACGAAACCCCATAAGGCTGTTCATATT
CCCTAGTATATTGTCATACTCCATTAGCAATTTCTCAGCTATTTACTTCC
GGCAACAGCAATCATCGTGTATGCCATCTCTCCCTTAATATTCGGGCGTC
ATTGGCAGGAGTTCCTGAAGCGACTGGAAAAGTGCGAAAAGTCAAAGCAG
GCAGCGCTCGGCGCCGCCATCGCCAAGCAAGAGCAAGAGCAAGAGGTATA
TTAGAGGATCCAAACTATTTTGACTGCAATATTACATAGGACGCATTCTA
GCAATTGTTCGGCGAGTCGATCCGCACCCGCGACGTTTCAGCGTCACCAG
GCGCCTTTAGGATTTGAAGTTGTGTGGGGTCTGAGAACGGACACCTCCTC
GTGGCGGCCGTTCAATAGTCAGAGTGAAAGTGAAATATAACGTGTTTTAA
GGCACGCAAAAGTCACACGTAAGCAGGAAACTCCCGCTTGGGATCGCTTT
CCCTCCCATTAGGCGACATAAACACGAGCCACTTACTATTGCAGTCATGC
TTCCATGCGCTTCCTGTTGAACGCCTATTTTTTTGGGACGTCCTCGATTT
TAGAGTGGTCCTTTTGTCAGTGCTCCATCGCCATTCTCCAGACCCTGATC
GACCGCAATGGATGAAGTAGATGAGAAGCTAATCCTCTCTTGTCCGCTGC
TCAATGCTTTTCCCTTCACCCGCTCTTTCTCTCTCTGCGGAAGAGAGGGA
AATGCGGTCAACATACGGAGAGACATAGCTGTTGAATGGTTTTCCCTCAA
TCTCTCTCTTTCTTTCTTTGCCAAGGATAGGAAAATGGGGCCGCATTTTG
AGGGGCATATGCACCCTGCTTCAAGACCGGAGTAATTATCTTTCAGACTC
GATCCTTACGACACCTATCGATTAGTCAATAGATACCTCTGACATTATTG
AAGTTGCCGCCGGCACCCCGTAAACATCGCCGACGCTCTTCCACCCCCGG
AAAGTGTCGGCGAAATATTCGCCGACGCTTCGGAAATTTCGCGGGCACGC
TCAAAAGTGTCGGTCACACCTGAGACAGTGTCGGTCACACCCCGGAATGA
GGATTCCGAAATTATCAGGGACACTTTCGGAAGTATTGCCGACCCTTTCG
ATATGCTGCCGATACCTCCTGAAGCGTAAAAAGAAACGTCGCCGACACCT
CCAAACTGTCCTTTCTGCTTCCAAATGCGTCAGCCACAGTTCTGATCATT
CCGGAACTGTTCGACACATTGGCAACTGCCGCCGACACCTGAGAGAGTTT
TCACCGGATGTGCCGGGAAACGCACGTCGCCCCTTCTACCGACCGCTCTG
TTGGACTGAAAACCTAGGGCGATGAAAATACATCCTTTTTTCCTGACACA
TGATCGTGCAGATACACGAACCAGCGATCTCATGAGTTTGCTGACAGCCG
TACATCGGAGTTCGTTCGTGACACTCCGTGGATCGCGATTACACCATGCT
AGGGTCATACTCCAAAATCGACGAAAATGACCTATTCTGGTGTTCGGTTG
ACGAAATAGACGCTCAACCACGTTGTTTTGTAGTAACTATACTCTTGTTT
CGTGCTCGAGCGATTGCTTCGCCGGCCAGTTTATAACTCGGTCCGTCACT
CCAACATCGCAGAGATGGCATGAAGACGGTGTGTTCTGGGAGGACGTGGA
AGATGACTTCATGAGCAGGTGAGCTAAAATAGCGTAGGTTTTATTGTAGA
CAGGGCTTTGGTTTCTTTTACATGATGTACTAATATATGATTCTATGAAG
AATCCGCAGAAATATCACATAAGTCAAGGTAGGACCAATATTAAGCTCAT
GCAGCTCGTGGTTGGTCCTCAATTCATGAACTTGCTGCACTTGCAAGTGG
CTCCTTGCACCCGCATAAAGATTCGTTCTTCAGGATTTACTTGAATACAA
ATTTGAATATATATTCCGGAATCCGGAATGACGACGACCTCAGCTCTATC
GTACTAAATTACAGGTACTCAATGTAAAGCTTATAGCTTAGTACGACCTC
CCCTGTTTCACCATGGTAGTGGCCGCCAAAGTCTGCTACACGTTTCGTGC
GAAATGCAGCCAAAAACTATTTGACTCCCCGCAGGTGCCCTATCAGACCG
AGGTTACGTCCTCCGTCCAAAGTCCTGTCCTATTAAGGTTTCGGTACTAA
AATCTTCTGTAATTTTGAGGTATATCAAACTCCGAGCATACCGTTCGACC
GTTCAAAGATTCAGCTTGCACAATCTGCTGTACTTGCCCCTCTTTTTTTC
CCGTAAGAACATCGTGTTGAGAAGAAAAAGTAAAAAAAATGTAATAAAAA
AACTATTTTGAAGATATCTATACGCGAGCCGACATCGTTATCTTTGCAGC
AGCTTCGACGCGCACATTTTGATGGAGCTCAATTTTGCAACATATGGAAA
ACGTTTTGGCCGATTTTACTGTCGTTGCAATATGTGTCATACAGAAAAAT
AGAATGTGGTTCGAGTATATGTTCTCAACCATTTCTACTTGAAGAATATT
ATGGAGCCGATCGTATACAGGTCGACGTTGTGGGCTTGTCGGACATTGTG
CTCGGAGCTTGATGATTCTCAAGATTACACACACACACACACACACATAC
ATATATATATAAACTACAGCAGGACAGACTTATGGGATGGGGAGAGTTTG
TACTTCCTCACCTATTTTTGTCGTATCTGATTCGCGCATCAAACGATGTG
ACCACAGGTTGCAAGAGGACGCGTTGCGAAGACAAATTTCTCTTCAATCT
CGCTCCAAGTCGCTACATCCAGATTGTACCTTCCGGACCAAGGTCAGCCG
TGCGAGCGAACGATTCGTCGAAAAGAGTTCTTGGTCAGGTGCGCACCAAG
CGATAATAATGACTGACGCAGCCTACCCGGCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig93:38664..41895- >mRNA_H-paniculata_contig93.17077.1 ID=mRNA_H-paniculata_contig93.17077.1|Name=mRNA_H-paniculata_contig93.17077.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig93:38664..41895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAAGAAAAACGCAAGGTTTGTCCAACCTGTGAAGTGGAATACCGAAA
GCCGAGGACCTGGACAGGCGTAAGAAAGGTTCAAGAAAAACGCAAGGTTT
GTCCAACCTGTGAAGTGGAATACCGAAAGCCGAGGACCTGGACAGGCGTA
AGAAAGGAGTTCCTGAAGCGACTGGAAAAGTGCGAAAAGTCAAAGCAGGC
AGCGCTCGGCGCCGCCATCGCCAAGCAAGAGCAAGAGCAAGAGGAGTTCC
TGAAGCGACTGGAAAAGTGCGAAAAGTCAAAGCAGGCAGCGCTCGGCGCC
GCCATCGCCAAGCAAGAGCAAGAGCAAGAGTTTATAACTCGGTCCGTCAC
TCCAACATCGCAGAGATGGCATGAAGACGGTGTGTTCTGGGAGGACGTGG
AAGATGACTTCATGAGCAGTTTATAACTCGGTCCGTCACTCCAACATCGC
AGAGATGGCATGAAGACGGTGTGTTCTGGGAGGACGTGGAAGATGACTTC
ATGAGCAGGTTGCAAGAGGACGCGTTGCGAAGACAAATTTCTCTTCAATC
TCGCTCCAAGTCGCTACATCCAGATTGTACCTTCCGGACCAAGGTCAGCC
GTGCGAGCGAACGATTCGTCGAAAAGAGTTCTTGGTCAGGTGCGCACCAA
GCGATAATAATGACTGACGCAGCCTACCCGGCCGTTGCAAGAGGACGCGT
TGCGAAGACAAATTTCTCTTCAATCTCGCTCCAAGTCGCTACATCCAGAT
TGTACCTTCCGGACCAAGGTCAGCCGTGCGAGCGAACGATTCGTCGAAAA
GAGTTCTTGGTCAGGTGCGCACCAAGCGATAATAATGACTGACGCAGCCT
ACCCGGCC back to top
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