mRNA_H-paniculata_contig9288.17070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9288.17070.1
Unique NamemRNA_H-paniculata_contig9288.17070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9288.17070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9288contigH-paniculata_contig9288:5961..6206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size247
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.7809238-UTR-H-paniculata_contig9288:5960..60321622931155.7809238-UTR-H-paniculata_contig9288:5960..6032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9288 5961..6032 +
1691481615.5437078-UTR-H-paniculata_contig9288:5960..60321691481615.5437078-UTR-H-paniculata_contig9288:5960..6032Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9288 5961..6032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.7941334-CDS-H-paniculata_contig9288:6032..62061622931155.7941334-CDS-H-paniculata_contig9288:6032..6206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9288 6033..6206 +
1691481615.5557113-CDS-H-paniculata_contig9288:6032..62061691481615.5557113-CDS-H-paniculata_contig9288:6032..6206Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9288 6033..6206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9288.17070.1prot_H-paniculata_contig9288.17070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9288 6033..6206 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9288.17070.1

>prot_H-paniculata_contig9288.17070.1 ID=prot_H-paniculata_contig9288.17070.1|Name=mRNA_H-paniculata_contig9288.17070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MKNKSRSHCQFVTIAHTVPTAMTFHVPSAAGYGLEAVNLGVEPGQLIGIV
GPVGSAKS
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mRNA from alignment at H-paniculata_contig9288:5961..6206+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9288.17070.1 ID=mRNA_H-paniculata_contig9288.17070.1|Name=mRNA_H-paniculata_contig9288.17070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig9288:5961..6206+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGGGGACCTGCATGTGATCTGTAACAAGTGCGTAGCATGAGGAATG
TCAGTAATTTGACCATAGACCAATGAAAAATAAATCAAGATCGCACTGCC
AATTTGTCACAATTGCCCATACCGTACCCACTGCCATGACTTTTCATGTC
CCGTCAGCAGCAGGGTACGGTCTGGAGGCTGTCAACCTCGGGGTGGAACC
GGGCCAGCTCATCGGGATTGTCGGTCCCGTGGGCTCCGCTAAGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9288:5961..6206+

>mRNA_H-paniculata_contig9288.17070.1 ID=mRNA_H-paniculata_contig9288.17070.1|Name=mRNA_H-paniculata_contig9288.17070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig9288:5961..6206+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAAATAAATCAAGATCGCACTGCCAATTTGTCACAATTGCCCATAC
CGTACCCACTGCCATGACTTTTCATGTCCCGTCAGCAGCAGGGTACGGTC
TGGAGGCTGTCAACCTCGGGGTGGAACCGGGCCAGCTCATCGGGATTGTC
GGTCCCGTGGGCTCCGCTAAGAGCATGAAAAATAAATCAAGATCGCACTG
CCAATTTGTCACAATTGCCCATACCGTACCCACTGCCATGACTTTTCATG
TCCCGTCAGCAGCAGGGTACGGTCTGGAGGCTGTCAACCTCGGGGTGGAA
CCGGGCCAGCTCATCGGGATTGTCGGTCCCGTGGGCTCCGCTAAGAGC
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