mRNA_H-paniculata_contig9284.17067.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9284.17067.1
Unique NamemRNA_H-paniculata_contig9284.17067.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: D7G373_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G373_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 2.570e-101
Identity = 161/217 (74.19%), Postives = 185/217 (85.25%), Query Frame = 1 
Query:    1 IIERVKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL 651
            ++ RV  QME+HP H + DP+ VAR+SK+I  LEE+VRQGWK E+KLKQPAWDEFLA+CRVL RYDALKD +     TPTAFGR+VG+INA+N+LWMALVLTR +I  LG+TELASLMPAI+NEY+RPD  TLYG SE V  FL+EL PVASELSEIQ+LEQ + PVRLDG LCGLVEGWA+GCDWSELV STSLDQGDLCRILRR ME+LRQIPVL
Sbjct: 1096 VMSRVAEQMENHPVHQVEDPESVARLSKEIISLEEQVRQGWKTEQKLKQPAWDEFLAVCRVLKRYDALKDAEVS---TPTAFGRMVGSINAENELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDGKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 1309
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A6H5L415_9PHAE (DSHCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L415_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 4.060e-98
Identity = 161/251 (64.14%), Postives = 184/251 (73.31%), Query Frame = 1 
Query:    1 IIERVKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKD---------KDDGQG-------------------------PTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL 651
            ++ RV  QME+HPAH + DP+ VAR SK+I  LEE   QGWK E+KLKQPAWDEFLA+CRVL RYDALKD         ++DG                           P PTAFGR+VG+INA+N+LWMALVLTR +I  LG+TELASLMPAI+NEY+RPD  TLYG SE V  FL+EL PVASELSEIQ+LEQ + PVRLD  LCGLVEGWA+GCDWSELV STSLDQGDLCRILRR ME+LRQIPVL
Sbjct:  324 VMSRVAEQMENHPAHHVEDPESVARQSKEIISLEE---QGWKTEQKLKQPAWDEFLAVCRVLKRYDALKDAEVSTDASGEEDGAAAXXXXXXXXXDKKADSKRAKKKWGEPKPTAFGRMVGSINAENELWMALVLTRKSILQLGYTELASLMPAILNEYTRPDLFTLYGPSEGVSAFLEELAPVASELSEIQMLEQVEQPVRLDSKLCGLVEGWANGCDWSELVASTSLDQGDLCRILRRAMEMLRQIPVL 571
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A835Z819_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z819_9STRA)

HSP 1 Score: 236 bits (603), Expect = 2.850e-68
Identity = 121/232 (52.16%), Postives = 160/232 (68.97%), Query Frame = 1 
Query:    1 IIERVKVQMESHPAHSIGD--PDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPT-------------PTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL 651
            +++RV+ Q+E+HP H + +   +EV   SK I  LE++VR GW+ E K +QPAWD+F++I RVL+RY AL  +D  Q                 TAFG LVG INADN+LW+ALVLT   I++L   +LA L+PAII+EYSRPD   LYG SE V   ++ L P+A+EL+ +Q+    D+PV+LD  L GLVE WA GCDW+EL  STSLDQGD+CR+LRRTME+LRQI +L
Sbjct:  896 VVQRVREQLEAHPLHGLDNVTKEEVLNASKDISALEDQVRNGWRSELKFRQPAWDDFVSITRVLIRYGALLPEDLSQESDVEDVGSNEKLRLRSTAFGDLVGGINADNELWLALVLTSSAIKALSDVQLAGLVPAIISEYSRPDMFNLYGVSEEVSLCVEALVPLATELTTVQLENAVDLPVKLDASLGGLVESWALGCDWAELCASTSLDQGDICRLLRRTMEVLRQIALL 1127
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A1Z4JAL9_LEPBY (DSH-like protein n=5 Tax=Leptolyngbyaceae TaxID=1890438 RepID=A0A1Z4JAL9_LEPBY)

HSP 1 Score: 152 bits (385), Expect = 6.090e-39
Identity = 82/211 (38.86%), Postives = 120/211 (56.87%), Query Frame = 1 
Query:   13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
            V+ Q+E+HP H  GD  ++ +  K+I  L+ ++    +   +  Q  W+EF+A+  VL ++  L D       TPT  G    AI  DN+LW+ L L   ++  L    LA+   A++ E SRPD+ T Y  SE V+  L EL  V  +L ++Q   Q  +PV L+  + GLVE WA G DW EL  +TSLD+GD+ R+LRRT++ L QIP
Sbjct:  655 VQAQLEAHPVHQWGDRPQIIKRQKRIEMLQSEIDDRQEKLDRQSQRHWEEFVALIEVLRKFGCLDDL------TPTILGEATAAIRGDNELWLGLALMSHDLDHLDPHHLATACAALVTEVSRPDSWTRYDVSEPVLEALSELRRVRRQLFQVQRRYQVVLPVWLEDEMVGLVEQWALGVDWLELCKNTSLDEGDVVRLLRRTLDFLSQIP 859
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A8J8CIT6_9CYAN (DEAD/DEAH box helicase n=1 Tax=Myxacorys almedinensis A TaxID=2690445 RepID=A0A8J8CIT6_9CYAN)

HSP 1 Score: 151 bits (381), Expect = 2.110e-38
Identity = 86/221 (38.91%), Postives = 124/221 (56.11%), Query Frame = 1 
Query:   13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL--VSESWR 669
            V  QME+HP +S GD  ++ +  ++I  L+ +V+       +  Q  W+EFLA+  +L  +  L D        PTA G+   AI  DN+LW+ L L    +  L    LA+   A++ E SRPD+ T Y  SE V+  L EL  +  +L ++Q   Q  +PV L+  L GL+E WA G DW EL  +TSLD+GD+ RILRRT++ L QIP +  +SE  R
Sbjct:  658 VLAQMEAHPVNSWGDRAQILKRQRRIQGLQAEVQDRQTKLGRQSQRHWEEFLALLDILQSFGCLDDL------RPTALGQATAAIRGDNELWLGLSLMSGELDHLDPHHLATACAALVTEVSRPDSWTHYDTSETVLQALGELRGIRRQLFQVQRRHQVALPVWLEDELIGLIEQWALGVDWLELCSNTSLDEGDVVRILRRTLDFLSQIPHVPHISEILR 872
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A0P4US24_9CYAN (Putative helicase n=8 Tax=Cyanobacteria TaxID=1117 RepID=A0A0P4US24_9CYAN)

HSP 1 Score: 150 bits (378), Expect = 5.340e-38
Identity = 88/223 (39.46%), Postives = 125/223 (56.05%), Query Frame = 1 
Query:   13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKV--RQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIPVL--VSESWR 669
            V  QME+HP H  G+  +  +  ++I  L E++  RQ  K++ K  Q  WDEF+A+  +L R+  L D       TPTA G    AI  DN+LW+ L L    +  L     A+   A++ E SRPDT   Y  S+ V+  L  L  +  +L ++Q   Q  +PV L+  L G+VE WA G DW EL  +TSLD+GD+ RILRRT+++L QIP +  V E+ R
Sbjct:  655 VLAQMEAHPVHEWGNRPQTLKRQRRIETLREEISDRQA-KLDEKT-QRHWDEFVALIEILRRFGCLDDL------TPTALGESTAAIRGDNELWIGLALMSGELDPLDPHHFAAACAALVTEVSRPDTWIRYDVSDPVLEALGGLRSIRRQLFQLQRRYQVALPVWLEDELVGIVEQWALGADWGELCSNTSLDEGDVVRILRRTLDLLSQIPHMPHVREALR 869
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A1D2PB61_9CYAN (DSHCT domain-containing protein n=1 Tax=Scytonema millei VB511283 TaxID=1245923 RepID=A0A1D2PB61_9CYAN)

HSP 1 Score: 138 bits (348), Expect = 7.740e-37
Identity = 71/211 (33.65%), Postives = 119/211 (56.40%), Query Frame = 1 
Query:   13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
            V+ Q+E+HP H  G+   + +   Q+  LE +++Q     ++  Q  W+EFL +  +L  ++ L +        PT  G++  AI  +N+LW+ LV     + +L    LA+ + A++ E  RPD+M  +  SE V+  L  L  +  ++ ++Q      +P+ L+  L  LVE WA G +W EL ++TSLD+GD+ RILRRT+++L QIP
Sbjct:   15 VQAQLEAHPLHQSGNAASIFKRRTQVAELEGEIQQMQAQVQQQSQRNWEEFLNLIEILQYFECLDNL------VPTRLGQIAAAIRGENELWLGLVFASGELDNLDPHHLAAAIAALVTETPRPDSMVRFDLSEEVLEALSRLRGIRRKMFQLQRRYNVALPIWLEFELIALVEQWALGMEWVELCENTSLDEGDVVRILRRTLDLLSQIP 219
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: UPI0019EED178 (DEAD/DEAH box helicase n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019EED178)

HSP 1 Score: 145 bits (366), Expect = 2.190e-36
Identity = 82/213 (38.50%), Postives = 119/213 (55.87%), Query Frame = 1 
Query:   13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKV--RQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
            V+ QM+ HP H+ GD  +V +  +++  LEE++  RQG  +  K  Q  W EFL +  +L  +  L+D        PT  G    AI  DN+LW+ L L       LG   LA+   A++ E SRPDT T YG SE  +  L+ +  +  ++ + Q   +  +PV  +  L GLVE WA G +W EL ++TSLD+GD+ RILRRT++ L QIP
Sbjct:  655 VQAQMDEHPMHTWGDRGKVQKQQRRLVRLEEELDDRQGKLV--KQSQQRWQEFLGLIEILEHFGCLEDFK------PTRLGEATAAIRGDNELWLGLALMSGEFDHLGPHHLAACCAALVVEVSRPDTWTRYGISENTLEALEGVRGIRRQVFQQQRRREIMLPVWFELDLIGLVEQWALGTEWLELCENTSLDEGDVVRILRRTLDFLSQIP 859
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A7S2DG78_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DG78_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.340e-36
Identity = 81/196 (41.33%), Postives = 120/196 (61.22%), Query Frame = 1 
Query:   73 RISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGC-DWSELVDSTSLDQGDLCRILRRTMEILRQIPVLVS 657
            R++KQ    E++V  G ++        W++FLA+  VL R+ A+    DG    PT  G LVG+ N+DN+LW+AL+LT P ++ L   ELASL+ A++ +Y+RPDT   +G S  V    + L  +A  L + Q+    D PV+L G   GLVE WASG   W++L  STS++QGD+C +LRRTME+LR +  + +
Sbjct:  900 RLAKQKKRREKQVEAGSQV--------WEDFLAMRDVLERFSAI----DGDNK-PTDLGLLVGSANSDNELWLALILTSPCVRRLSAPELASLISAVMIQYTRPDTFVAFGPSAAVTIAAESLRELAETLYDAQVEFDVDCPVQLAGSYAGLVESWASGLVTWNQLTSSTSMNQGDVCTMLRRTMEVLRSMTSIAA 1082
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BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Match: A0A3M9Z168_9CYAN (RNA helicase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A3M9Z168_9CYAN)

HSP 1 Score: 144 bits (364), Expect = 4.050e-36
Identity = 77/211 (36.49%), Postives = 119/211 (56.40%), Query Frame = 1 
Query:   13 VKVQMESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAICRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQSLGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTMEILRQIP 645
            ++ Q++ HP HS+G P  + +  K+I  +++++    +   +  Q  W EFL++  +L  +  L+D        PT  G++  AI  DN+LW+ L L    + +L    LA+   A++ E SRPD  T Y AS  V   L EL  +  EL ++Q   Q  +PV L+    GLVE WA G +W+EL  +TSLD+GD+ RILRRT++ L Q+P
Sbjct:  649 LEAQLKDHPLHSVGHPTYLLKRQKRIERMQDELASRRQKLSQHSQRYWQEFLSLMEILQAFGCLEDAK------PTPLGQVAAAIRGDNELWLGLALASGELDTLDPHHLAAACAALVTEVSRPDNWTRYDASLEVETALGELRSIRRELFKLQRRHQVALPVWLETEWMGLVEQWALGVEWTELCANTSLDEGDVVRILRRTVDFLSQVP 853
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9284.17067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G373_ECTSI2.570e-10174.19DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L415_9PHAE4.060e-9864.14DSHCT domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z819_9STRA2.850e-6852.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Z4JAL9_LEPBY6.090e-3938.86DSH-like protein n=5 Tax=Leptolyngbyaceae TaxID=18... [more]
A0A8J8CIT6_9CYAN2.110e-3838.91DEAD/DEAH box helicase n=1 Tax=Myxacorys almedinen... [more]
A0A0P4US24_9CYAN5.340e-3839.46Putative helicase n=8 Tax=Cyanobacteria TaxID=1117... [more]
A0A1D2PB61_9CYAN7.740e-3733.65DSHCT domain-containing protein n=1 Tax=Scytonema ... [more]
UPI0019EED1782.190e-3638.50DEAD/DEAH box helicase n=1 Tax=filamentous cyanoba... [more]
A0A7S2DG78_9STRA2.340e-3641.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3M9Z168_9CYAN4.050e-3636.49RNA helicase n=2 Tax=Pseudanabaenales TaxID=288137... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9284contigH-paniculata_contig9284:3473..8300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue2.5e-86
Seed eggNOG ortholog2880.D7G373
KEGG koko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000373,GO:0000375,GO:0000377,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0007275,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009892,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010494,GO:0010496,GO:0010497,GO:0010501,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048519,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay
EggNOG OGsCOG4581@1,KOG0947@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-03_004770.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons5
Model size672
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9284.17067.1prot_H-paniculata_contig9284.17067.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9284 3497..8300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.4644377-UTR-H-paniculata_contig9284:3472..34961622931155.4644377-UTR-H-paniculata_contig9284:3472..3496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9284 3473..3496 +
1691481615.3953986-UTR-H-paniculata_contig9284:3472..34961691481615.3953986-UTR-H-paniculata_contig9284:3472..3496Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9284 3473..3496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931155.4776702-CDS-H-paniculata_contig9284:3496..35801622931155.4776702-CDS-H-paniculata_contig9284:3496..3580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 3497..3580 +
1691481615.4112568-CDS-H-paniculata_contig9284:3496..35801691481615.4112568-CDS-H-paniculata_contig9284:3496..3580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 3497..3580 +
1622931155.488972-CDS-H-paniculata_contig9284:4047..42471622931155.488972-CDS-H-paniculata_contig9284:4047..4247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 4048..4247 +
1691481615.41977-CDS-H-paniculata_contig9284:4047..42471691481615.41977-CDS-H-paniculata_contig9284:4047..4247Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 4048..4247 +
1622931155.5020468-CDS-H-paniculata_contig9284:5008..51141622931155.5020468-CDS-H-paniculata_contig9284:5008..5114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 5009..5114 +
1691481615.4285977-CDS-H-paniculata_contig9284:5008..51141691481615.4285977-CDS-H-paniculata_contig9284:5008..5114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 5009..5114 +
1622931155.5153267-CDS-H-paniculata_contig9284:6285..63571622931155.5153267-CDS-H-paniculata_contig9284:6285..6357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 6286..6357 +
1691481615.4375267-CDS-H-paniculata_contig9284:6285..63571691481615.4375267-CDS-H-paniculata_contig9284:6285..6357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 6286..6357 +
1622931155.5296652-CDS-H-paniculata_contig9284:8114..83001622931155.5296652-CDS-H-paniculata_contig9284:8114..8300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 8115..8300 +
1691481615.447129-CDS-H-paniculata_contig9284:8114..83001691481615.447129-CDS-H-paniculata_contig9284:8114..8300Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9284 8115..8300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9284.17067.1

>prot_H-paniculata_contig9284.17067.1 ID=prot_H-paniculata_contig9284.17067.1|Name=mRNA_H-paniculata_contig9284.17067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
MESHPAHSIGDPDEVARISKQIFPLEEKVRQGWKIERKLKQPAWDEFLAI
CRVLMRYDALKDKDDGQGPTPTAFGRLVGAINADNQLWMALVLTRPNIQS
LGHTELASLMPAIINEYSRPDTMTLYGASERVIGFLDELGPVASELSEIQ
ILEQADIPVRLDGMLCGLVEGWASGCDWSELVDSTSLDQGDLCRILRRTM
EILRQIPVLVSESWR*
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mRNA from alignment at H-paniculata_contig9284:3473..8300+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9284.17067.1 ID=mRNA_H-paniculata_contig9284.17067.1|Name=mRNA_H-paniculata_contig9284.17067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4828bp|location=Sequence derived from alignment at H-paniculata_contig9284:3473..8300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCATTGAGCGGGTTAAAGTGCAGATGGAGAGTCATCCCGCACACAGTAT
TGGCGACCCAGACGAGGTTGCGAGGATCAGCAAACAGATTTTTCCTCTGG
AAGAAAAGGTACAGTTGTAGTTGATGCTATGCTGTCCCAGGAGAAGGCCC
CGAGAGATATTGAGCTATCCCTTGAGCTCTATTTTGGCTTTTTTTTAGCA
TTTAAGTCGTTGGCATATTTTGGATTTTGGTGAATGTTTTGGATATATGA
AGAATAATTAGAGGTCAGGCCAGGCCATTCCTATGTTTCAGATAATTCGC
ATAAACATTTTCACTGTACTTGAGTAGTTTACGTCACCCCAATTAGCGCT
ATTTTGTTTTCATAGTATAGATGTGAGATAATAGTCAGCCCGCATGTCTT
TTACCCCAATGGTTTACACGCTGAACGTCTGGCGCGGCACTAGGAAATCG
TCTGTTTTCCCGTGTTTTTTTTTTTGCTCTATCTTGTTGCCCGTCTTTTT
TTTCGGCATTTTGATCTGTTGACCATGTTTACCATCGTTCCCTCCCCCCC
CCCGCCCCTATACGTTGTTTTGCAGGTGCGACAGGGATGGAAGATAGAGC
GCAAGCTGAAGCAGCCAGCCTGGGATGAATTCTTGGCCATTTGCCGCGTC
CTGATGCGCTACGATGCCCTGAAGGACAAAGATGATGGACAGGGACCTAC
GCCTACCGCCTTCGGCCGACTTGTCGGCGCTATTAATGCCGACAACCAGT
TGTGGATGGCCCTGGTACTCACCAGGTGAGGAAGGTGGCTGGGATTGATT
GATCTCTGTTCCTGTACTTCCGCGAAGATATGAAGTAAACACGGTGTACA
TTAGGTAGTGAAATCAGGACGGACAATATTCGTAAACTGCAAGTTGATGA
ATCTTGAAGTATCGTCGTGATCTAACCGATACCACTGCAGGTTTGTTATT
ATCTAGTTTTCGTTTCTTGGCTCCAACCTCGGGTTGTTGAAGCTTACCAC
CTGGTGAGGAAGAGAGGGCGGAGAGATGGAGAGAGAGAGGGAGACAGACA
GACAGACAAATGTTACCGATGCTGAAATGGTTGTTGGGTGGGAGTCATCG
AAGTCTTCGAATCTTCAAGGACGTTGTGCCTTTACGCAAGTCTAGCAAGC
AGTGTTTCCCTGGGTCAAGGGTCTGAGGGCAAACCGCGAACTGCACAGGC
ATAGAGTCTATCAAATCTCCGCATGAACGCGCTTCAATGAATCGTTATCG
GTTCCGTTGCTCCTTCCCCCTCCTCTCTTGCGCGCTTAAGTTGGACAGTT
TGTGGATACGCAATACAGCAACTTGCACATGTTGTGTATGTATTCGTTTC
GTTCAACGGCAATATTGTCATTCTTATTACACTAATTTGTCTTCGTTTTT
GTACAAGTCGCTCCTTGCTCTATAATTTTCCCCCAACATATATTCTTACA
GCGCAGGCTGGCGAATCTCCCCCTCTCCTCCCTCTCCGTCCCTCCGTTGA
TTAAAAACATACCACCCATAAACCCGTGCATGGCAGACCGAACATCCAGA
GTCTAGGGCATACGGAACTGGCTTCGCTTATGCCCGCGATTATCAACGAG
TACTCGAGGCCCGACACGATGACGCTGTACGGGGCATCTGAGGTCTGTGA
CATAAAGGCACTCATCAGATATATACTCAGGAGTATATATATATATACAC
ACACACACATATTATATAGTATGTAATAGTCGCGAAAGCTTATGATTAGG
ACAAGATCACGTTTGGAGAGTTCAAGCCTTTTTCCCCTTCAACACAAGCA
ACTACCACCGAATACGACGGTAGTGTACGGTACAGTAATGTATTTTCACG
AGTAGTGAGGATTTTCACGGCACGATACGGTACTGTAGGATATGGTACGG
TGCCCGTTTTTCGTTTCACTGTGGTAAACCCGAGGTATAATGATAGTCCA
TTTCCACGCTATGGCAGCAGTGTGCCGTTATTTCGATCTCACCGCGGTCG
AGCTATCGCGGTGAGACAACTGTGGAGGCATCTACCAAATACAACCGAAC
TACGCCGCAAGCTGGTATTTGGATTATTTGTCGGGACATGATTTGCTGCC
TTCCCCGTGATGTGTAACCTTAGAACGTACGTGGGGTTGTACAAGTGTGC
GGAAGTTTGTTATTCTCCATCAAATTAATACCCAAAATAGCCTCAATCTT
CAACAACAAATGTGTTCGTATACGCATTAGCACCGTAAAAAAATTAGGAT
TGAGCGCTTGGAATCGGGGTCAGGCATGGAGCGCCGGTTTTCTTCGGCAA
GCCCGATTGTCGTCTGTACGAATCAAGCACTGTCTTTTTCCAGCCGAAAA
CTGTATGCCGCCAAGTCTACCACTTCTCTTTCAGAGGGGACGACATAACG
TACATAGTCGCGTCTATCGGCACTGTCAATAATATAGCGCCATTTCGCAA
CCAAAAAACGTGCTCGAAACGAAGATTCTAGAATGATGCGAAGATGTGAG
CCCCCATAACGACTTATCATGGGAATGATATACGAAGGTGATAGTGATTC
TAGGAGATGGAGAGTGTGACCTCAAAACGCGAGGATTGAGGTAAATGCAT
AGAATAGGTGAAAGCTTTTTGAGCAACTGTTTGGAGACGTAGAATAGATT
GATTTCGCCGTCGGAGGTCGATCGCTCTTGCAGGAACAAAGCTCCGTCCT
CTCGACCACGCGTGGCCAATGATCTAAAAGTTAATGCATACAAAACATTA
GCACCCCCGTCAACCGCCTTACCTCCTTTGATATTCCGTCTGTCCATGTC
TCTCTGTTACCAGCGTGTGATCGGATTTTTGGATGAGCTTGGGCCCGTAG
CATCGGAGCTGTCGGAGATCCAGATTCTCGAACAGGTGGGAGGGTGGGAA
GGTCGTGGTTACGGGAACGTAAAGTGTGGTATCTCGATCATTGAACTCTC
ATCCCTACGGGGTCGGAACTGAGAATCCTGAATTTTTGTCAGCCAGGCTG
CATTTCACTAGGGTGATACTACTTTTAAAAGAAATCAGTACAGGTTGAAA
ACGTGGTTTCTTTTGAAAGAATGCTATCGAATTAGCCGCTTCGGTCGGGG
AAAGGTCTGTTCGGAGCCTAAAAGGGAGAAATCACCTTTTGCACAAATTT
CTGTTATCTCTCTACTGAACGGTGTCAAGTGACAGTTTTCATACATCGTC
TCTATTATGATGTCGCCATCAGTATTCACCCCGCCGATGTATGTTCTCCG
TAGACCGAGGTCTCGAAGGAGATTACTCGCAGCTTGGGCGCCTGTGTGTC
GCTCTACTTCGGTTCCTTGTTTGGGTTCCGTCGCAGCCCTAGTTGACGGA
GAGCTACGCTAGTCGTGCCGACGCTGCTCGCCGCACCTACAACCAACCTC
TGCACATCGACTGGACTTGCTGTGCCTGCAGTGACATGCTCACACTCGCA
CATCGACACACTGAACATTCAAGTTTCGCACTGTACGTTCCAACAAACTC
ATCAAGGAAGGATATTATTATTATTTGTCACCTCGACATTATGTTAGAAT
ATCCCAAAGGTCATCACAATACACTACAATATGGTACAGTACCGGTAACG
GTATACTGCCCATTTTCTGGATTCGATATAGTGTAATGTACTTGATGAAA
ATATACCCACGAGAAAATGATGGGTATTCCCTCTCGTCATGTATTGCCCT
CGTTCCTCCTCGATCTCCTGTATTATTTTCTATCAAGTCTAACGTACTGA
ATCAAGAATCAAAGCCAAGACAACTCGCTTTTACCGGTATGGGTGATGAA
TTGTGAAGAACTTCGATAAGGAGAGAGTAAGTAAAATGGTTGTTTATGCC
TGTACCGAGCTATACCGTGAGTTAGAGCTGAACGCATTCATTCCCATGTC
CTTCCACTCTCATCAACATGTACCGGGCTGTTACGGGGAATATTACATCC
CTGGTGTACCGTTGCGTGGCCTCCATAACCAGGCTTGAGATCATTTTGGA
GACTAAAATCTCGGAGAGAGATCAATATCGCTATACAGAGTGATATCTGA
ATATTGATATCCTCGTGCACTTAACGGTATTCGTTTTCATTCGCGCTTAG
ATCCACCCGAATTGGTTTGGAATTTGTGGAGATTTTTTTTTTTTTTGCGA
TGAAAAATGAAGTAACGGATATTTTGGGACCTTTTATGGTGACACTGGGT
GTGCAGCCTCAAGACCGCAAGTCAACGAATATTTCGAATTTTCGAAAATT
GCTTAACAGGACTTTGCGGCGGGATTAATGGATGATGACAAAACAATCAG
GGAGTGAATGGGATGAAAGCTCGATATGAAATCCCCTGCGTGTGCTTTTC
GTGTGTCTAGGTGCTGATTTTTGACTGACTGTTTTTAGCCTGAAGTTCGC
AGGTTTCTGCCGTTTCTGCCACAGACATGAAGTTGTACACCACCCTGTCT
TGTGATATGCGAAGTCCCATGTTGATCTAGTGTAAGCATTGTGTGTGCTG
TCAATGATAAGGAATTTAGATATCTAGGAAAACGATCGAAGAGAAGCGAA
AATTTAGTCGTGCGTTTACGGGCTTCCATCTTGCTGATATATGGCTCCTT
CTTTAATTTCCATCGACCTACTTTATTCGTGTCATGTGGCAGGCCGATAT
CCCCGTGAGGTTGGACGGCATGCTGTGTGGTTTGGTGGAGGGATGGGCTA
GTGGTTGTGACTGGAGTGAGCTGGTGGACAGCACTTCCTTGGATCAGGGA
GACTTGTGCCGTATCTTGAGAAGGACCATGGAAATCCTGCGGCAAATTCC
TGTTTTGGTGAGTGAGAGCTGGCGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9284:3473..8300+

>mRNA_H-paniculata_contig9284.17067.1 ID=mRNA_H-paniculata_contig9284.17067.1|Name=mRNA_H-paniculata_contig9284.17067.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig9284:3473..8300+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAGTCATCCCGCACACAGTATTGGCGACCCAGACGAGGTTGCGAG
GATCAGCAAACAGATTTTTCCTCTGGAAGAAAAGATGGAGAGTCATCCCG
CACACAGTATTGGCGACCCAGACGAGGTTGCGAGGATCAGCAAACAGATT
TTTCCTCTGGAAGAAAAGGTGCGACAGGGATGGAAGATAGAGCGCAAGCT
GAAGCAGCCAGCCTGGGATGAATTCTTGGCCATTTGCCGCGTCCTGATGC
GCTACGATGCCCTGAAGGACAAAGATGATGGACAGGGACCTACGCCTACC
GCCTTCGGCCGACTTGTCGGCGCTATTAATGCCGACAACCAGTTGTGGAT
GGCCCTGGTACTCACCAGGTGCGACAGGGATGGAAGATAGAGCGCAAGCT
GAAGCAGCCAGCCTGGGATGAATTCTTGGCCATTTGCCGCGTCCTGATGC
GCTACGATGCCCTGAAGGACAAAGATGATGGACAGGGACCTACGCCTACC
GCCTTCGGCCGACTTGTCGGCGCTATTAATGCCGACAACCAGTTGTGGAT
GGCCCTGGTACTCACCAGACCGAACATCCAGAGTCTAGGGCATACGGAAC
TGGCTTCGCTTATGCCCGCGATTATCAACGAGTACTCGAGGCCCGACACG
ATGACGCTGTACGGGGCATCTGAGACCGAACATCCAGAGTCTAGGGCATA
CGGAACTGGCTTCGCTTATGCCCGCGATTATCAACGAGTACTCGAGGCCC
GACACGATGACGCTGTACGGGGCATCTGAGCGTGTGATCGGATTTTTGGA
TGAGCTTGGGCCCGTAGCATCGGAGCTGTCGGAGATCCAGATTCTCGAAC
AGCGTGTGATCGGATTTTTGGATGAGCTTGGGCCCGTAGCATCGGAGCTG
TCGGAGATCCAGATTCTCGAACAGGCCGATATCCCCGTGAGGTTGGACGG
CATGCTGTGTGGTTTGGTGGAGGGATGGGCTAGTGGTTGTGACTGGAGTG
AGCTGGTGGACAGCACTTCCTTGGATCAGGGAGACTTGTGCCGTATCTTG
AGAAGGACCATGGAAATCCTGCGGCAAATTCCTGTTTTGGTGAGTGAGAG
CTGGCGTTGAGCCGATATCCCCGTGAGGTTGGACGGCATGCTGTGTGGTT
TGGTGGAGGGATGGGCTAGTGGTTGTGACTGGAGTGAGCTGGTGGACAGC
ACTTCCTTGGATCAGGGAGACTTGTGCCGTATCTTGAGAAGGACCATGGA
AATCCTGCGGCAAATTCCTGTTTTGGTGAGTGAGAGCTGGCGTTGA
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