mRNA_H-paniculata_contig9276.17060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9276.17060.1
Unique NamemRNA_H-paniculata_contig9276.17060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9276.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9276contigH-paniculata_contig9276:4036..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size716
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9276.17060.1prot_H-paniculata_contig9276.17060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9276 4302..4709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.2546937-UTR-H-paniculata_contig9276:4035..43011622931154.2546937-UTR-H-paniculata_contig9276:4035..4301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9276 4036..4301 +
1691481614.853337-UTR-H-paniculata_contig9276:4035..43011691481614.853337-UTR-H-paniculata_contig9276:4035..4301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9276 4036..4301 +
1622931154.2868967-UTR-H-paniculata_contig9276:4709..47511622931154.2868967-UTR-H-paniculata_contig9276:4709..4751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9276 4710..4751 +
1691481614.8789682-UTR-H-paniculata_contig9276:4709..47511691481614.8789682-UTR-H-paniculata_contig9276:4709..4751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9276 4710..4751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.2690198-CDS-H-paniculata_contig9276:4301..47091622931154.2690198-CDS-H-paniculata_contig9276:4301..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9276 4302..4709 +
1691481614.8679836-CDS-H-paniculata_contig9276:4301..47091691481614.8679836-CDS-H-paniculata_contig9276:4301..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9276 4302..4709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9276.17060.1

>prot_H-paniculata_contig9276.17060.1 ID=prot_H-paniculata_contig9276.17060.1|Name=mRNA_H-paniculata_contig9276.17060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MRCSTSYPALEPRASHNDAVSAPCTHREPCFLIWPRHFLFLAHNSLLLRL
FMPTARIFFSRWPRSLNLFPAAFTRPTFQHFSTVTAIITTIAAVAAARSF
TRLPRLLSHVPNLSRASLYLPNPTFQKFLRIGHKP*
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mRNA from alignment at H-paniculata_contig9276:4036..4751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9276.17060.1 ID=mRNA_H-paniculata_contig9276.17060.1|Name=mRNA_H-paniculata_contig9276.17060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=716bp|location=Sequence derived from alignment at H-paniculata_contig9276:4036..4751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGACCAAGAATAATACAAAAGTTTAATTAGACGGGAAAAACGTCAAGG
AATCCAACGCGACGACCCGTTTTGAAACCAGACATCATCCTGAAGAGTTA
TACGGTAAACAGCTAACGGGACAGACTTGCGGGACAGAAAGAATATATAT
TGAGGTTGAAAGGACAAGGCAAGGAAGTCCAAGAAAAACAGCGTAAGGGC
GCCGGTAAATAGATATAATGCTAGGATTTTCGTCTTCTTGATTACTTCTA
AAACGGAGAAGATCCCATGCGGTGCAGCACCTCATATCCGGCACTCGAAC
CACGTGCGTCACACAACGACGCAGTCAGCGCGCCATGTACGCACCGTGAG
CCTTGTTTTTTAATTTGGCCGAGACATTTTCTCTTCCTTGCCCACAACTC
TCTCCTTCTTCGTCTCTTCATGCCCACTGCCCGCATCTTCTTCTCCCGTT
GGCCGCGGTCGCTGAACCTCTTCCCCGCCGCCTTCACTCGTCCCACTTTC
CAGCATTTTAGTACCGTCACCGCCATCATCACGACTATTGCTGCTGTCGC
CGCCGCTCGCTCGTTTACTAGACTCCCTCGCCTCCTTAGCCATGTCCCAA
ACCTCTCCCGCGCCAGCCTTTACCTCCCTAACCCGACCTTCCAAAAATTC
CTTCGCATTGGTCACAAGCCCTGACAAAATAGGCGTTTCGTGGATGGTCC
CTCCGTCCTCTTTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig9276:4036..4751+

>mRNA_H-paniculata_contig9276.17060.1 ID=mRNA_H-paniculata_contig9276.17060.1|Name=mRNA_H-paniculata_contig9276.17060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig9276:4036..4751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGGTGCAGCACCTCATATCCGGCACTCGAACCACGTGCGTCACACAA
CGACGCAGTCAGCGCGCCATGTACGCACCGTGAGCCTTGTTTTTTAATTT
GGCCGAGACATTTTCTCTTCCTTGCCCACAACTCTCTCCTTCTTCGTCTC
TTCATGCCCACTGCCCGCATCTTCTTCTCCCGTTGGCCGCGGTCGCTGAA
CCTCTTCCCCGCCGCCTTCACTCGTCCCACTTTCCAGCATTTTAGTACCG
TCACCGCCATCATCACGACTATTGCTGCTGTCGCCGCCGCTCGCTCGTTT
ACTAGACTCCCTCGCCTCCTTAGCCATGTCCCAAACCTCTCCCGCGCCAG
CCTTTACCTCCCTAACCCGACCTTCCAAAAATTCCTTCGCATTGGTCACA
AGCCCTGAATGCGGTGCAGCACCTCATATCCGGCACTCGAACCACGTGCG
TCACACAACGACGCAGTCAGCGCGCCATGTACGCACCGTGAGCCTTGTTT
TTTAATTTGGCCGAGACATTTTCTCTTCCTTGCCCACAACTCTCTCCTTC
TTCGTCTCTTCATGCCCACTGCCCGCATCTTCTTCTCCCGTTGGCCGCGG
TCGCTGAACCTCTTCCCCGCCGCCTTCACTCGTCCCACTTTCCAGCATTT
TAGTACCGTCACCGCCATCATCACGACTATTGCTGCTGTCGCCGCCGCTC
GCTCGTTTACTAGACTCCCTCGCCTCCTTAGCCATGTCCCAAACCTCTCC
CGCGCCAGCCTTTACCTCCCTAACCCGACCTTCCAAAAATTCCTTCGCAT
TGGTCACAAGCCCTGA
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