mRNA_H-paniculata_contig927.17058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig927.17058.1
Unique NamemRNA_H-paniculata_contig927.17058.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig927.17058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig927contigH-paniculata_contig927:29389..30325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size498
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig927.17058.1prot_H-paniculata_contig927.17058.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig927 29403..30132 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.0329058-UTR-H-paniculata_contig927:29388..294021622931154.0329058-UTR-H-paniculata_contig927:29388..29402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig927 29389..29402 +
1691481614.7337136-UTR-H-paniculata_contig927:29388..294021691481614.7337136-UTR-H-paniculata_contig927:29388..29402Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig927 29389..29402 +
1622931154.086948-UTR-H-paniculata_contig927:30132..303251622931154.086948-UTR-H-paniculata_contig927:30132..30325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig927 30133..30325 +
1691481614.7663252-UTR-H-paniculata_contig927:30132..303251691481614.7663252-UTR-H-paniculata_contig927:30132..30325Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig927 30133..30325 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.0501013-CDS-H-paniculata_contig927:29402..294511622931154.0501013-CDS-H-paniculata_contig927:29402..29451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig927 29403..29451 +
1691481614.7445376-CDS-H-paniculata_contig927:29402..294511691481614.7445376-CDS-H-paniculata_contig927:29402..29451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig927 29403..29451 +
1622931154.065511-CDS-H-paniculata_contig927:29890..301321622931154.065511-CDS-H-paniculata_contig927:29890..30132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig927 29891..30132 +
1691481614.755385-CDS-H-paniculata_contig927:29890..301321691481614.755385-CDS-H-paniculata_contig927:29890..30132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig927 29891..30132 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig927.17058.1

>prot_H-paniculata_contig927.17058.1 ID=prot_H-paniculata_contig927.17058.1|Name=mRNA_H-paniculata_contig927.17058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MTAVGGWKKGEHRNRPGGDNQIAAGTYWRCASCLTSLSGTDFAQFEELSR
EIRLFEYWIFSAAEQSRPRSDGYPDCDGFQRSNLGYFMRQRNRVWK*
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mRNA from alignment at H-paniculata_contig927:29389..30325+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig927.17058.1 ID=mRNA_H-paniculata_contig927.17058.1|Name=mRNA_H-paniculata_contig927.17058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig927:29389..30325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGATTGACACGGCATGACAGCAGTCGGTGGATGGAAAAAAGGAGAACAT
AGAAATCGACCAGGTGAGAGAGAAGAGATACTTGTCGACACTCAGTACTG
ATAGAAGGGCGTATCAGACGAGACAGGCACCTATTTATTATCTAGTATAG
CCTGGGTTACCCTGCCGCGGCAACACGATATGTCATGAGAGCACTGTGTG
TAGGTGGCGTGGCTTGATCAGCGAAGATGTTTACAGATATTCTCGGAGTC
GCCCCCCAGATGTTTAGTCGTTTTTGTCTCCTGTGCCGACCAGATTCTGT
TTCGGAATAGAACAGACATCTCACAGCTGACAGCAAATGTCGACGGATGC
GGTCAGTCGTTGCAGGCAGAACTATGTGATGTACCTGTATGTGCTGTATG
TGTCGTCTGTGGTGGACTTAACTGGCTACTAGTCCAGCCCAACAGCGGCG
GCTCCATATCCGCGTTATTATGTCATTTGCGTCTTTTTGCCCTGTTTTCG
AGGTGGGGATAATCAGATTGCAGCGGGGACTTACTGGAGATGCGCTTCGT
GCCTGACAAGTTTATCCGGAACGGATTTTGCCCAGTTTGAGGAATTATCC
CGAGAAATCCGTTTATTTGAATATTGGATATTCTCTGCTGCGGAGCAAAG
TAGACCACGGAGCGACGGATATCCGGATTGTGATGGATTTCAACGGAGCA
ACTTGGGGTATTTTATGCGACAGCGTAATAGGGTTTGGAAGTAAGGAGCC
ACAGGGCAGGTTGTATACATATAATAGCCGCATGGGGGATGTTGATTTGC
TGTTTGCGCGTTGTATCATATACGGTCGAAAACTGAAGGAAAAAGATAAA
CACAAGTGAATCTTTTGGTTTGCCGTTTGAGTTTGGTTTGAATAGTTTCG
GAATCGCCATCATATCCGAGTCTGCACATTGTCGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig927:29389..30325+

>mRNA_H-paniculata_contig927.17058.1 ID=mRNA_H-paniculata_contig927.17058.1|Name=mRNA_H-paniculata_contig927.17058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig927:29389..30325+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGCAGTCGGTGGATGGAAAAAAGGAGAACATAGAAATCGACCAGA
TGACAGCAGTCGGTGGATGGAAAAAAGGAGAACATAGAAATCGACCAGGT
GGGGATAATCAGATTGCAGCGGGGACTTACTGGAGATGCGCTTCGTGCCT
GACAAGTTTATCCGGAACGGATTTTGCCCAGTTTGAGGAATTATCCCGAG
AAATCCGTTTATTTGAATATTGGATATTCTCTGCTGCGGAGCAAAGTAGA
CCACGGAGCGACGGATATCCGGATTGTGATGGATTTCAACGGAGCAACTT
GGGGTATTTTATGCGACAGCGTAATAGGGTTTGGAAGTAAGTGGGGATAA
TCAGATTGCAGCGGGGACTTACTGGAGATGCGCTTCGTGCCTGACAAGTT
TATCCGGAACGGATTTTGCCCAGTTTGAGGAATTATCCCGAGAAATCCGT
TTATTTGAATATTGGATATTCTCTGCTGCGGAGCAAAGTAGACCACGGAG
CGACGGATATCCGGATTGTGATGGATTTCAACGGAGCAACTTGGGGTATT
TTATGCGACAGCGTAATAGGGTTTGGAAGTAA
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