mRNA_H-paniculata_contig9268.17056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9268.17056.1
Unique NamemRNA_H-paniculata_contig9268.17056.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9268.17056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9268contigH-paniculata_contig9268:1861..4977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size806
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9268.17056.1prot_H-paniculata_contig9268.17056.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9268 2043..4977 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.7885427-UTR-H-paniculata_contig9268:1860..20421622931153.7885427-UTR-H-paniculata_contig9268:1860..2042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9268 1861..2042 +
1691481614.6259577-UTR-H-paniculata_contig9268:1860..20421691481614.6259577-UTR-H-paniculata_contig9268:1860..2042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9268 1861..2042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.805799-CDS-H-paniculata_contig9268:2042..24221622931153.805799-CDS-H-paniculata_contig9268:2042..2422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9268 2043..2422 +
1691481614.640703-CDS-H-paniculata_contig9268:2042..24221691481614.640703-CDS-H-paniculata_contig9268:2042..2422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9268 2043..2422 +
1622931153.8228986-CDS-H-paniculata_contig9268:4733..49771622931153.8228986-CDS-H-paniculata_contig9268:4733..4977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9268 4734..4977 +
1691481614.6608255-CDS-H-paniculata_contig9268:4733..49771691481614.6608255-CDS-H-paniculata_contig9268:4733..4977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9268 4734..4977 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9268.17056.1

>prot_H-paniculata_contig9268.17056.1 ID=prot_H-paniculata_contig9268.17056.1|Name=mRNA_H-paniculata_contig9268.17056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MKALDGDDAHDGLQSQRVSTAQHASITGVHSARLRLALLLLVPVVHLRLG
AQGFGLRSNPGARATQVGGCGTGARLKPVLRIASGLRLRQRDVESNSRGR
SSSSYCCSQDSLIGDTQQRFSADVTAGFRHRTRRRPPSSRRSGAMGMAVG
AAGGESAREIGTDSAAAAAAAAARAIALEVPVGEKERETADSGGVARVGG
GRWLGGQG
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mRNA from alignment at H-paniculata_contig9268:1861..4977+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9268.17056.1 ID=mRNA_H-paniculata_contig9268.17056.1|Name=mRNA_H-paniculata_contig9268.17056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3117bp|location=Sequence derived from alignment at H-paniculata_contig9268:1861..4977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTGTTGCGTGCATGCGGACTTGTTCGTAGCAAGACACTCGCTTCTCCT
TTAGGTTGCCAAGAACACTCACTGTGCCATTTTAGATCAACACAGAGAAG
ACACCGAGGCAAATCAACCTTCCAACATCTATTTTTACATGCGAAACCAC
CATAGCAGTAACGTGCTCTCTCCAGCAGAAAGATGAAAGCACTTGACGGT
GATGATGCTCATGATGGACTGCAGTCGCAACGGGTGTCGACAGCACAACA
TGCTAGTATCACAGGTGTTCACTCGGCCCGTCTGAGGCTAGCTCTGTTGC
TTCTGGTGCCTGTGGTGCATCTGCGGCTAGGGGCCCAGGGGTTCGGCTTG
AGGAGTAATCCTGGAGCACGAGCAACACAGGTTGGCGGCTGTGGTACAGG
TGCCAGATTGAAGCCAGTGTTGAGGATTGCGAGCGGCCTGCGGCTCCGGC
AACGGGATGTTGAAAGCAATAGCCGCGGCAGGAGCAGCAGCAGTTACTGC
TGCAGTCAAGATTCATTAATAGGCGATACGCAACAGAGGTTCAGTGCCGA
CGTCACCGCCGGGTAGGTACTACGTTCTTGGGTATGTGCGTGCCGCGGTT
GATATGTGTTGGCGTCTCTTGCACCTAGCTATACCGCATCGTCTGTACGG
TATACCTGATGTGTACCATTTTGTCGGTGACCGTCTCTTGCCCCCAAATG
GTTTTTTTGCTATCGATCGATCGATGGTCGCGTTTCTGCGCGCAGCAATC
TTTTTTTTTAAATGTGTTGGAGGTGTGTATATGGTGTACAGCTGTCGTCG
TTTGTCAAACATACGAGTACTAGGTAGGTGATTTATTTGGTCATTGCAGA
GTAAGTACGTCTGTTTCATTTATGTCGTGTTGACAAACTTGCGACCCTGC
ATATGCGATACCCCCGAACGTAAATACCAGCAGCACCTGTGTTTACCCAG
CCGTCATCACATACGCAATTGCAATTTTGTCGAGAGTAAAGCGTAGAAGC
GCGAGACACTCATTTCTCTTGCGAAGTCAAATGCAAACGTCACTGCGCAA
CGACGACGCTTCGGTATGTGTCTGAACAATTCGTCTTTCGAGCAGCCAAT
TTTGTCGACTGTAAGGTGAGAAGGCAAGAGACAAATAAATCGCTCTACAA
CTCTAGTAGTAATTTAGGTGCCTCTGAAATCTACTGTATCACAAGATCGA
GATCTTATTTTTCCCCGTTGCGTTCTGTCAGTAACCGCTTTGTTTTGTAA
GACAAATGAGTTCTTGGAACTTTCTATTGCGTGGCATAAAGCTCTACGCA
TAAGCAGAAGGTACCTGGTGCTAGAGGAACCGTCCTTTTTTTTCATGTAT
GACTTCACCTGTAGGAATCCCTCGATGCTCTGGCCTCGGGTCTGAGCGAT
TAGACTCACGTGTCGGAGAAACCGTCGCTGCCCCCCAGGGCGGTAAGAAA
TCTTGCGTGAAGTATCGGAAGGGTAATGAGTAAACCGAAATAACTGCAGC
AGTACTTAACGAGTATTTCGTCGGCTCCTTGAGCGTGGTGATATCTCGAC
AAACAGAGAAGGTGCATAGATTCTTTGATGCAGGTCCCACGCGGGGGAGA
GTGCTGGGGTGGGTAGTGCACACCAGAAAAACATAGCATTCAGTCTGCAG
CTTCTCCGAACAATCCCAAATTGAATCGTGCCACAATTCTAAGAACTAGC
CTCAGAGTAACTGTTAAACCGGTTCCCAGGACGCCTCCCTCAGATGTCAG
AGTTTAACGTCACAGCAGTCGATCTCTCACGTAATCTTCTATCTTGAATG
GAAAAACATAGACAATCGAGCACTCTCTCTTGTTATACGCGTCTGAAAAG
ACAAAATCGGACACCCAGGGTAACACCTATAGCAACCAACCATGGAGGGA
AAAATCCGATGTCCGGGCGAAAAGGCTTCCTCAATACAGGGCCTAACAAG
GGTAAATCAAACAGTGCTTATCACAGTTTTGGTCGCTTGACACCTCTTCC
CAAATGATGACGGAATGGGTACCTGCCGTCGCGAATATCTGGATGATAAC
GTTGAAGAATATGCGAGCTTCATTATCTAGTTGTGGCGTATGCGAAACGA
GCCACCGGTGCAATAGCTACTAATGTCTTGTCGAATTTGTTTTTGATGAC
ATTCGACCACCAATCTCGAGGAAGATCTACTCCAGGAATATTATTTAGTA
GGACAAAACCTTATGAATGAGGGAGAATAGATACAAAATGGTTTTCTTTT
GACAGTGATTGAGATATATAAGGATTTTGTGACGCCTGTACATGGTACGC
AGCATTTCTTAGTCACTGAGACCAACAAATAATGTGCTTACCCCATTTTT
ATTGAACGTGTTAAATAGATTGATTGCTCTCAACCACGGTCAATTCACTT
GAAATATGCAAACGGTGAAGATGGCTGCGATATAGCACCACCCCCTTCAT
ATAGTGCGTTCCCCAATAACGGTGTCCATTACTGAAACCGGAACTGTAAA
CCGAAACTGTGCTTCGATGTGTACCCGTAACAGTAACTATAACCGTAGTC
GTACCCCTAACGGTCACTTGAGCAAAAACCGCAACCGGAACCGTAGTCAT
AACTGTACCTATAACCGTAGCTATAACCCTAACGACCACTTCAGCAAACA
CCGCAATCGTAACCGTGCCCGTAACGGTACCTACTACCGTAGCCGTACCC
CTAACGGCAACTTGAAAGCATAAACTGATCCTGCAACTGTAACTACAACT
GTAGCCATAACTGTAGTAATAATATCCCTAGCCCTAACTCAGGAGTGGAC
ATGTAGACACCTGACCTACTATCTGCGCCCCATTATCATGCACCACATCA
CACCGCTACTTTCTATTTTTCAGCTTCCGACATCGCACCCGACGACGGCC
GCCGAGCAGTCGCCGTAGCGGCGCGATGGGCATGGCAGTTGGGGCGGCAG
GAGGTGAATCCGCGAGGGAAATCGGTACAGATTCAGCAGCAGCAGCAGCA
GCAGCAGCAGCGAGAGCAATAGCCTTGGAAGTACCCGTTGGCGAAAAGGA
ACGTGAAACAGCCGATAGTGGCGGTGTTGCTAGAGTCGGTGGGGGCAGAT
GGTTGGGCGGACAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig9268:1861..4977+

>mRNA_H-paniculata_contig9268.17056.1 ID=mRNA_H-paniculata_contig9268.17056.1|Name=mRNA_H-paniculata_contig9268.17056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig9268:1861..4977+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGCACTTGACGGTGATGATGCTCATGATGGACTGCAGTCGCAACG
GGTGTCGACAGCACAACATGCTAGTATCACAGGTGTTCACTCGGCCCGTC
TGAGGCTAGCTCTGTTGCTTCTGGTGCCTGTGGTGCATCTGCGGCTAGGG
GCCCAGGGGTTCGGCTTGAGGAGTAATCCTGGAGCACGAGCAACACAGGT
TGGCGGCTGTGGTACAGGTGCCAGATTGAAGCCAGTGTTGAGGATTGCGA
GCGGCCTGCGGCTCCGGCAACGGGATGTTGAAAGCAATAGCCGCGGCAGG
AGCAGCAGCAGTTACTGCTGCAGTCAAGATTCATTAATAGGCGATACGCA
ACAGAGGTTCAGTGCCGACGTCACCGCCGGATGAAAGCACTTGACGGTGA
TGATGCTCATGATGGACTGCAGTCGCAACGGGTGTCGACAGCACAACATG
CTAGTATCACAGGTGTTCACTCGGCCCGTCTGAGGCTAGCTCTGTTGCTT
CTGGTGCCTGTGGTGCATCTGCGGCTAGGGGCCCAGGGGTTCGGCTTGAG
GAGTAATCCTGGAGCACGAGCAACACAGGTTGGCGGCTGTGGTACAGGTG
CCAGATTGAAGCCAGTGTTGAGGATTGCGAGCGGCCTGCGGCTCCGGCAA
CGGGATGTTGAAAGCAATAGCCGCGGCAGGAGCAGCAGCAGTTACTGCTG
CAGTCAAGATTCATTAATAGGCGATACGCAACAGAGGTTCAGTGCCGACG
TCACCGCCGGCTTCCGACATCGCACCCGACGACGGCCGCCGAGCAGTCGC
CGTAGCGGCGCGATGGGCATGGCAGTTGGGGCGGCAGGAGGTGAATCCGC
GAGGGAAATCGGTACAGATTCAGCAGCAGCAGCAGCAGCAGCAGCAGCGA
GAGCAATAGCCTTGGAAGTACCCGTTGGCGAAAAGGAACGTGAAACAGCC
GATAGTGGCGGTGTTGCTAGAGTCGGTGGGGGCAGATGGTTGGGCGGACA
GGGGCTTCCGACATCGCACCCGACGACGGCCGCCGAGCAGTCGCCGTAGC
GGCGCGATGGGCATGGCAGTTGGGGCGGCAGGAGGTGAATCCGCGAGGGA
AATCGGTACAGATTCAGCAGCAGCAGCAGCAGCAGCAGCAGCGAGAGCAA
TAGCCTTGGAAGTACCCGTTGGCGAAAAGGAACGTGAAACAGCCGATAGT
GGCGGTGTTGCTAGAGTCGGTGGGGGCAGATGGTTGGGCGGACAGGGG
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