mRNA_H-paniculata_contig9255.17045.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9255.17045.1
Unique NamemRNA_H-paniculata_contig9255.17045.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A6H5JQE4_9PHAE (DUF775 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQE4_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 9.390e-104
Identity = 157/188 (83.51%), Postives = 168/188 (89.36%), Query Frame = 1 
Query:    1 MSTASAIPFGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            MS A A+PFG+I PGRPVI EFRAIDSSKCV EI  PREVDE+VFFLLP SPVPPG  AVLYFS+P+ATTGA+EHWEVLGA+AA+KPSGVFRTGWPTNEQ+QSC V QLGVSIESED  TNL L AGGVQDRK FALKIAKDLFQFMSSFS +TQAG E+MVVPTNVLDRWI RFESKYNRDPNFMLK
Sbjct:    1 MSVAPAVPFGIIVPGRPVIPEFRAIDSSKCVAEIVNPREVDELVFFLLPTSPVPPGQTAVLYFSVPSATTGAFEHWEVLGALAASKPSGVFRTGWPTNEQMQSCAVVQLGVSIESEDTATNLGLSAGGVQDRKNFALKIAKDLFQFMSSFSQSTQAGPELMVVPTNVLDRWILRFESKYNRDPNFMLK 188
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A835ZAF1_9STRA (DUF775 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF1_9STRA)

HSP 1 Score: 209 bits (531), Expect = 7.120e-61
Identity = 99/189 (52.38%), Postives = 133/189 (70.37%), Query Frame = 1 
Query:    1 MSTASAIPFGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGS-EVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            M+    +PFG++  GRP+I+EFR +D++K   E+  P +V E+VFFLLP SP+PPG  A LY+S P      +++WE +GAV  A PS + RTGWPT+E +Q CP+ QLGVSIES D + NL+       DR+ FAL++A+DLF+F+SSFST    G  E++V P NVLDRWI RFE+KY RDPNF+ K
Sbjct:    1 MAQTPVVPFGIVIEGRPLISEFRVVDATKAAVEVQYPVQVAELVFFLLPTSPLPPGTGAALYYSAPR-----FQNWEYIGAVEPAAPSAILRTGWPTDEALQQCPMVQLGVSIESLDTINNLKAAGSRDGDRRFFALQVARDLFRFISSFSTTQNTGEQELLVAPANVLDRWIARFEAKYARDPNFIFK 184
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A024TK25_9STRA (DUF775 domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TK25_9STRA)

HSP 1 Score: 204 bits (519), Expect = 3.190e-59
Identity = 102/180 (56.67%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG +  GRPVI ++  I  ++ V +I  P +V ++ FF+LP SPVPPG AAVLYF++P+      ++W++LG+V A KPS +FRT WPT+  +   PV QLGVSIES D V NL + A G+++RK FALKIA DLF FMSSFST++   S +MVVPTN+LDRWI RFESKY RDPNFM+K
Sbjct:    5 FGTVIAGRPVITDYIEISPTQFVVDIPYPEQVTDITFFMLPQSPVPPGFAAVLYFAVPH-----LQNWQLLGSVFAEKPSAIFRTAWPTHPDVVGQPVIQLGVSIESADNVRNLGIEASGLEERKSFALKIAMDLFNFMSSFSTSSN--SNMMVVPTNLLDRWIERFESKYRRDPNFMMK 177
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A7S2V1Q5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Q5_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.990e-58
Identity = 100/180 (55.56%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG++ PGRPV   FR I  +K V +I  P+E+ +V FF LPN  +P G + +LY+S        +++W VLGA++ AKPSGVFRTGW TNE ++     QLGVSIES DV+ NL L   GV+DRKQFA KIA DLFQFM+SFS ++  G E+MV+PTN+LDRW+ RFE KY  DPNFM+K
Sbjct:   40 FGLLVPGRPVQTAFRQILETKFVADILNPQEISDVCFFTLPNFVIPEGFSVILYYS-----PAPFDNWSVLGALSTAKPSGVFRTGWATNESLRGASHLQLGVSIESVDVMKNLNLDETGVEDRKQFAHKIALDLFQFMASFSQSSSQGGELMVIPTNILDRWMERFEQKYRVDPNFMMK 214
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: K3X1K5_GLOUD (DUF775 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1K5_GLOUD)

HSP 1 Score: 202 bits (515), Expect = 9.120e-58
Identity = 103/180 (57.22%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG++  GRPV+ +FR I     V EI  P  V ++ FFLLPNSPVPPG+ AVLYF++P+      ++W++LG V A KPS +FRTGWPT+  +   PV QLGVSIES D V NL + A G  +RK+FALKIA DLF +MSSFST+T      M +PTN+LDRWI RFE+KY RDPNFMLK
Sbjct:   67 FGLVIAGRPVLTDFREIGPMHYVVEIGDPTLVADLTFFLLPNSPVPPGYGAVLYFAVPS-----LQNWQLLGTVFAEKPSAIFRTGWPTHPDVVGQPVLQLGVSIESLDNVKNLGIEASGFAERKEFALKIAMDLFNYMSSFSTSTNQA--YMTIPTNLLDRWIERFEAKYKRDPNFMLK 239
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: T0SBJ9_SAPDV (DUF775 domain-containing protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0SBJ9_SAPDV)

HSP 1 Score: 198 bits (504), Expect = 5.060e-57
Identity = 96/180 (53.33%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG++  GRPV+ +F  I  ++ V ++  P +V ++ FFLLP+SPVPPG+AAVLYF++P+      ++W++LG+V A KPS +FRT WPT+  + + P+ Q+GVSIE  D V NL + A G+ +RK FA KIA DLF FMSSFST+T     +MV+PTN+LDRWI RFE+KY RDPNFM+K
Sbjct:    4 FGMVIAGRPVVTDFAEISPTQFVVDVPYPEQVTDITFFLLPHSPVPPGYAAVLYFAVPH-----LQNWQLLGSVFAEKPSAIFRTSWPTHPDVANQPIIQVGVSIEPVDNVKNLGIEASGLTERKAFAHKIAVDLFNFMSSFSTSTDRS--LMVIPTNLLDRWIERFEAKYRRDPNFMMK 176
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A5D6XTY2_9STRA (DUF775 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTY2_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.220e-56
Identity = 99/180 (55.00%), Postives = 127/180 (70.56%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG++  GRPV  +F  ID +     I  P  V ++ FFLLPNSPVPPG+ AVLYF++P+      ++W++LG V A KPS +FRTGWPT+  +   PV QLGVSIES D V NL + A G+ +R++FALKIA DLF FM+SFST+T      M +PTN+LDRW+ RFE+KY RDPNFMLK
Sbjct:    8 FGLVIAGRPVHTDFIEIDPAHYTLSIGDPTAVTDLTFFLLPNSPVPPGYGAVLYFAVPS-----LQNWQLLGTVFAEKPSAIFRTGWPTHPDLLGQPVVQLGVSIESLDNVKNLGIEASGLAERREFALKIAMDLFNFMTSFSTSTNQA--YMTIPTNLLDRWMERFEAKYKRDPNFMLK 180
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A8K1CEH9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEH9_PYTOL)

HSP 1 Score: 196 bits (498), Expect = 3.950e-56
Identity = 100/181 (55.25%), Postives = 130/181 (71.82%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFST-NTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG++  GRPV  +F+ I   + +TEI  P +V ++ FFLLPNSPVP G+ AVLYF++P     A ++W++LG V A KPS +FRTGWPT+  +   PV QLG+SIE  D V NL + A G+ +RK FALKIA+DLF +M+SFST NT A    M +PTN+LDRW+ RFE+KY RDPNFMLK
Sbjct:    6 FGLVIAGRPVFTDFQEIGPGRYMTEIPEPTQVTDLTFFLLPNSPVPMGYGAVLYFAVP-----ALQNWQLLGTVFAEKPSAIFRTGWPTHPDVAGQPVLQLGISIEPLDNVKNLGIEASGLVERKAFALKIAQDLFNYMTSFSTSNTTA---YMTIPTNLLDRWMERFEAKYKRDPNFMLK 178
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: D0N9M8_PHYIT (DUF775 domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=D0N9M8_PHYIT)

HSP 1 Score: 194 bits (494), Expect = 1.790e-55
Identity = 96/180 (53.33%), Postives = 128/180 (71.11%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLK 564
            FG++  GRPVI +FR I  +  V +I  P +V ++ FFLLP SPVPPG  AVLYF++P     A ++W++LG V A KPS +FRT WPT+  +   PV QLGVSIES D V NL + A G+++RK FALKIA+DLF ++SSFS++       M +PTN+LD+W+ RFE+KY RDPNFM+K
Sbjct:   11 FGLVIAGRPVITDFREIGPAHYVVDILEPTQVTDLTFFLLPGSPVPPGFGAVLYFALP-----ALQNWQLLGTVFAEKPSAIFRTSWPTHPDVVGQPVLQLGVSIESLDNVKNLGIEASGLEERKAFALKIAQDLFNYLSSFSSSNS--QSYMTIPTNLLDKWMERFEAKYRRDPNFMMK 183
[Close]
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Match: A0A7S3GYJ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYJ8_9STRA)

HSP 1 Score: 193 bits (490), Expect = 6.040e-55
Identity = 87/177 (49.15%), Postives = 128/177 (72.32%), Query Frame = 1 
Query:   25 FGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPNSPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQIQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSFSTNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNF 555
            FG++ PGRPVI EF+ +DS+K +T +  P  V E+ FFLLP + +PPG+ A+LY+S+P      +++W ++G++  +KPSG+FRT W  NE++++CPV QLGVS+E  + + NL +   GV+DR  FA KIA DLFQ+M+SFS+ TQ G  ++ VPT++ D+W+ RFE KY  DPNF
Sbjct:   12 FGIVVPGRPVITEFQLVDSTKAMTMLEQPATVPELTFFLLPTTVIPPGYGAILYYSVPP-----FQNWVLIGSIDPSKPSGIFRTNWANNEEVRNCPVVQLGVSLEPLETINNLHIAGSGVEDRFAFAHKIALDLFQYMTSFSSGTQNG--MIAVPTSIFDKWMERFERKYRLDPNF 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9255.17045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQE4_9PHAE9.390e-10483.51DUF775 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835ZAF1_9STRA7.120e-6152.38DUF775 domain-containing protein n=1 Tax=Tribonema... [more]
A0A024TK25_9STRA3.190e-5956.67DUF775 domain-containing protein n=3 Tax=Aphanomyc... [more]
A0A7S2V1Q5_9STRA1.990e-5855.56Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3X1K5_GLOUD9.120e-5857.22DUF775 domain-containing protein n=1 Tax=Globispor... [more]
T0SBJ9_SAPDV5.060e-5753.33DUF775 domain-containing protein n=2 Tax=Saprolegn... [more]
A0A5D6XTY2_9STRA2.220e-5655.00DUF775 domain-containing protein n=1 Tax=Pythium b... [more]
A0A8K1CEH9_PYTOL3.950e-5655.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0N9M8_PHYIT1.790e-5553.33DUF775 domain-containing protein n=7 Tax=Peronospo... [more]
A0A7S3GYJ8_9STRA6.040e-5549.15Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9255contigH-paniculata_contig9255:4326..8938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.3
Seed ortholog evalue3.7e-86
Seed eggNOG ortholog2880.D7FMX4
Preferred nameC11orf73
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005829,GO:0005975,GO:0006020,GO:0006066,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007030,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019751,GO:0030323,GO:0030324,GO:0030544,GO:0031072,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034605,GO:0034613,GO:0035295,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048513,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060541,GO:0061608,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0080134,GO:0080135,GO:0140104,GO:0140142,GO:1900034,GO:1901615
EggNOG free text desc.Hsp70 protein binding
EggNOG OGsKOG4067@1,KOG4067@2759
Ec32 ortholog descriptionProtein of unknown function DUF775
Ec32 orthologEc-25_002670.1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1733
Cds size570
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.0006716-CDS-H-paniculata_contig9255:4325..43931622931152.0006716-CDS-H-paniculata_contig9255:4325..4393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 4326..4393 +
1691481613.6996932-CDS-H-paniculata_contig9255:4325..43931691481613.6996932-CDS-H-paniculata_contig9255:4325..4393Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 4326..4393 +
1622931152.0161054-CDS-H-paniculata_contig9255:5574..56231622931152.0161054-CDS-H-paniculata_contig9255:5574..5623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 5575..5623 +
1691481613.7123606-CDS-H-paniculata_contig9255:5574..56231691481613.7123606-CDS-H-paniculata_contig9255:5574..5623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 5575..5623 +
1622931152.0317729-CDS-H-paniculata_contig9255:5811..59211622931152.0317729-CDS-H-paniculata_contig9255:5811..5921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 5812..5921 +
1691481613.722977-CDS-H-paniculata_contig9255:5811..59211691481613.722977-CDS-H-paniculata_contig9255:5811..5921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 5812..5921 +
1622931152.0457175-CDS-H-paniculata_contig9255:6415..65361622931152.0457175-CDS-H-paniculata_contig9255:6415..6536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 6416..6536 +
1691481613.7332394-CDS-H-paniculata_contig9255:6415..65361691481613.7332394-CDS-H-paniculata_contig9255:6415..6536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 6416..6536 +
1622931152.058722-CDS-H-paniculata_contig9255:7158..73191622931152.058722-CDS-H-paniculata_contig9255:7158..7319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 7159..7319 +
1691481613.7471075-CDS-H-paniculata_contig9255:7158..73191691481613.7471075-CDS-H-paniculata_contig9255:7158..7319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 7159..7319 +
1622931152.0739787-CDS-H-paniculata_contig9255:7714..77751622931152.0739787-CDS-H-paniculata_contig9255:7714..7775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 7715..7775 +
1691481613.7549946-CDS-H-paniculata_contig9255:7714..77751691481613.7549946-CDS-H-paniculata_contig9255:7714..7775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9255 7715..7775 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.0885572-UTR-H-paniculata_contig9255:7775..89381622931152.0885572-UTR-H-paniculata_contig9255:7775..8938Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9255 7776..8938 +
1691481613.7632327-UTR-H-paniculata_contig9255:7775..89381691481613.7632327-UTR-H-paniculata_contig9255:7775..8938Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9255 7776..8938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9255.17045.1prot_H-paniculata_contig9255.17045.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9255 4326..7775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9255.17045.1

>prot_H-paniculata_contig9255.17045.1 ID=prot_H-paniculata_contig9255.17045.1|Name=mRNA_H-paniculata_contig9255.17045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MSTASAIPFGVIAPGRPVIAEFRAIDSSKCVTEIATPREVDEVVFFLLPN
SPVPPGHAAVLYFSMPNATTGAYEHWEVLGAVAAAKPSGVFRTGWPTNEQ
IQSCPVAQLGVSIESEDVVTNLRLGAGGVQDRKQFALKIAKDLFQFMSSF
STNTQAGSEVMVVPTNVLDRWITRFESKYNRDPNFMLKG*
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mRNA from alignment at H-paniculata_contig9255:4326..8938+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9255.17045.1 ID=mRNA_H-paniculata_contig9255.17045.1|Name=mRNA_H-paniculata_contig9255.17045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4613bp|location=Sequence derived from alignment at H-paniculata_contig9255:4326..8938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACAGCATCAGCCATCCCGTTCGGCGTCATCGCCCCTGGTCGTCC
AGTTATAGCAGAATTTAGGTGAGTGATTGGGTTGGTATTATACTCCTGTA
GTTGGTGACGCTTGGGGCTCCGGAGGTTATTTCGCAGCAAAAATCATGTG
ATGATACATGTCAAGTGCTGCAGTCTTTGTGCGCAAAACCGTACCAAGCC
CGTGCCTATGCATCGATGCGTAATCTTGTCTTTGGGTGATTTTTTTGGCT
GTTTTCTTGGTGAAGTTTTCGGTGAGAGTTCTACCTCCCTTAAAGGGTTA
ATAAGCATACATGAATTGGTGCCAATCGCATCGTCTCCAACCTGGCTGCA
TGTCCAGCCGCAGTGGTGTGATAATGTTGAGGGGAATGAACACGTTGTGA
GGTGTGCCATACAAGCGATCTGGGGCATGTACAAGTACATGTGTTTCTTT
GCTGAGGTGAGTAATTTGAGTTCGCTGCGTTGTCATCAGCTCAGCACGAG
GCAAACGTCCCCACTCAGTAAGAAGTACCGTTCGGTACAGCCATGTCTGT
CGTCGAGTAAAGTACAAAATCTCATGTTTCCGCAAGTTTGCCTTTTTTTT
ATGCACTCAAAACGACCGCGCTAATTATTTTGCCCTTTGGCATGGGTACG
ATAAATGAAACGGGCTGAGGGAAAATGAAGCTACTGCGACGAAAAGAGGT
AATTCGCTGTGTTTCGGCAAGTACTTCACAAGCTCGCATTGGATTTCTGG
GTCGCGTGAGTTTTTCAGAGTTCAGGAATTCAGTAAACGTAAGATCCTGT
AAGAAATGGTTATTCGCCTATTGAAGTGATTTTGTGAAAATGAAATCAAA
TTACCAAGATTGGGCGCTAAAAACTCGTCGAACGGCAGACTAATACTGTT
TTCCTGGGATTGGGGGAATACTGACACATGATGTCCACTGACACACTGCT
TCAGGCGTTAACCTCAATTTTGGAGGGATGCAGCACTGCGGCATGTTTTC
CATGCGTGGTGTCCGAGAGCGTATATATGTATGGGAGTTCAGAAACACAA
AGAATCCATGAAAAAATCATGTGGTAACCGTAGTGCAATAATCTATCCTC
AGCTTAAATCCAAACTCCCACAAGAAGTATTGATTTTCGTCATTTATTTT
AGACAGCAATTTTCACTATCGCGTGCTACGACGTCCTTGGGCTTAACATA
GATATTGCTCGCCTCTTCCCTCCTCCTCATCTTGCCCCCTGCTTGCTAGG
GCGATAGATTCATCCAAGTGCGTGACTGAGATCGCCACTCCAAGAGAGGT
GGGATTGTGCTGCTGTAGCTCTTGGAACGTAATCTTCGGGGCTTTTATGC
TGTTGAGACGTACATGATCCGATTTTTGCTCTTAGTTTGAAGGTTTTGAT
TGCTAACAGGTTTATTTTATGGACCAAGGAGGTACATACAGCTCAACACG
TGCGTTGCCGTCCTTTTGTCGTCATGCGTGTCGAAGGTGGATGAGGTGGT
ATTTTTCTTGTTACCGAACTCCCCAGTGCCTCCAGGACACGCTGCCGTAC
TTTATTTCAGTATGCCAAATGCCACAACAGGAGCTTATGAACACTGGTGA
GTTCTTGATAGTCTGACTGAAGACCCGTATCCTCCGTGAATCGACCGATG
CACATGACTGTGTGATAAGAACAGAAGATTGACGTGGCACGCAGCTGAGT
GACTGTCAAATCTCTCCACGAAATGATGTGAAACAGATTTATGCTCCACT
TGGAGTACAAAAAATTTGATGCCAGTAGTGCTCGCTGCTGTGTTCGAGTT
ACCCTTGTTATAGCCCTTGGCTTGTAGTGGAACGAGGGTACCGAGAGTAC
AATATACCTGTTGGATCTGTCGTGCGTGGTGGAGTTGATAACATGGCTAC
AGCTGGGGATTCGTTTGCGATATTTCTACATGTTATCCACGTCGATGTCG
ACTCTCTGTTTGACGCTGTCATCGAATCAAAGCCTATCCTAAATATGACA
CGATGACTTCCACACGCTACAGGCATTCCCAATGCAACTTTATCGTGTCT
TGCCGGTTGTGACTTATTTGTTTATATTTTTGTTAAGCAGGGAAGTTCTC
GGCGCGGTAGCGGCGGCTAAACCATCGGGTGTATTCCGAACCGGCTGGCC
GACCAACGAGCAGATACAATCATGCCCGGTTGCGCAGCTGGGCGTTTCCA
TTGAATCGGAGGTGAGGCTACGTTAACAAACAATGTAGTCCGAAGGCTGC
TGGGCGAGTTTTGAAGACGCGATAACCTGAGAGATTGAAACTAGTATGGC
ATCGTGCGTTGGTCTATTGGCGAAACATAGGCTAGTGATTGATACCGAAA
TGAAGGCCACCCAGCGACGTGAGGGTGGTCAGTCATCTTTTGATAGCGAA
TCCTATACGCAGATGTTCACAAGGTTTTGAAATGCAGCAGCTCTAAAGTG
GAGTACATGACACGTCTGTCTTCATGTCGCGAATAACGCCAGTTAAAACA
GTTCAGGACCGGGGAAACGCTTTTCAACTCATCTCTCCTCGAGAGCAAGC
TGACAAGCTGTCCTAACCCAACCTCGAGCGATTCCTGTGAAGGAGCGTTG
GGACACTAAACCCCCACAAAACACCGGCGAGTAATGACTAGATTGGTCTC
TGGAGCGGGCCTTTCATATCGTGCCATATTTTCTTCGGTTATGAAACGGA
CATATACCCTTCGCTTGTTGCTCCAGCTTTCAAAAGGGGAAATAGTAAAA
TGGTACAGGCCGGGGCGTTGTGCTGGCTTTAGTGTACATTGCGGCTGAAG
TCGTATTCTGACATGCTTTTTATATGCGCGCAGGACGTCGTCACCAACCT
TCGGCTGGGAGCTGGGGGTGTGCAAGATCGCAAGCAGTTCGCACTCAAAA
TCGCGAAAGATCTTTTCCAGTTCATGTCATCCTTCAGCACCAACACTCAG
GCAGGGTCGGAGGTGATGGTTGTGCCGACAAACGTCTTGGACAGGTAATT
CTTCGCATCTATTTTGGTTGGTTTGGCTCGGTTTATTTCAGTAGGAATGG
CTAAGCTGAGTGAGCCTTGACTTGGTCCAGTTTGGTTTGCAGTGTTCGTT
ATTGCTGTTATTTGTTTGGTCGGGCATCTTCCTGCTGCTGGGTGTTACTC
AGAAATTTTGTTGCTTCTATGATTCACCTGTTGTGAAGTCTGCTCGTAGA
GTGTACTCATGATCCGAAGGGCACTGCTTTGTTGACTTGGTGATTGTCGA
TTGTATCTTACATCGTGTCGCAGGTTGAATTGTCGTAGTAATGGATCGAG
AAACTTGAGGGATTTTGCGCACATGATTAATCGTATACCAGTTTGGTTGT
ACCGTTCTTCCCCTGCTCACCGTGACTGCAACAATGCAGGTGGATAACCC
GCTTTGAGAGCAAGTATAATCGAGATCCGAACTTCATGCTCAAGGGATAG
AGAGCGTTAGCTTGTGGTGACGACATTTCATATGTATTCAAAATGAAATT
GGGGAGTTTCGATGTGTATAGGGAGGGGGGATGTCAACTCTTGTATTTGT
TGCATGCGAAGGATAAGTTGATGAGTAGTATATTTTGTAGGTAGATTGTA
TTCTAGCCTCTTCGTCCAAACGCCTACACCCTATCGTTTGAAGCAATGAT
ACAGGGAAGGCTTGGTATTACTCCCATGTTTGGAGCTTGACATGGCATCA
CGTAGAGCTCGAGCTAAGTACCATTCATCGTGTTTCTCGCCCGAAGAGAC
GGTTAGCGAGCCGATGGGCGCTCATTGTTGGACAATTTTTTTCGTTGAGT
TGGCAGTCCCTCATATTTGACATTGCCCTGTTGGGTTATATTCGATGACC
AATCTTGCATGCCCCGAGAAGCAGCATCAGCCGGAGGTAGAACGCATCAT
TTCAGGCGTCAACGTATTAGTATTGCTTTACAGTAGGGTTACTCTAGTGT
CATTGCGCCATAGGAATACGAGAGATGACCTCGGGCGGTACGATCGCCAG
GGCTTCGAATTGTACGTGATTGCCAAATTTATTGCGCCTCCATGGTGTCC
CTGGACAGTTTCGTTATCACTGGGGGAAGTACAATAGTACGGTACACCAC
AAAACAAAACATTACACTGTTGTCGCAACTTGAGGCAGGCACGGCGTGGC
TTTGTATGGAATCCTTAGCTGCATTCGTGTGTCTAGTGCGGTTCTTGGAG
GGGAGCTAACATATAACAATGCAACAGCGTTTTAGTGCATTGAGTCATTT
CGAGGGCACAGAACAACAGGCTCATTAACTGAGCTTCACGACCGGACGTG
GTCGTGACACGTTTTGCATCAGACTCAAAAGTGTGCCTGCTACAGTAGCC
CTTTCCACGTAGGGGCCTTGGTGTGGCATTTATTGCGTCTTCCGAGGTCT
GCGTATTTTTAAATGTGTCATCATGCGTAGAGCGATGCGTGTAGTCTCGG
CGAAAGGCACGTGTTGGTCCAGGTGTAGACAAGCCACTGAGTGATATTGT
ATTTCGTCGAAAGTTACTCACCAGGCTCCAGGCAACGGCGAACGGCGAAT
CGTTCTTTTTCAAATCCGCCAAGGGAATTTAAAAGGCTGAAAACGCGTTT
TCAACAAGAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9255:4326..8938+

>mRNA_H-paniculata_contig9255.17045.1 ID=mRNA_H-paniculata_contig9255.17045.1|Name=mRNA_H-paniculata_contig9255.17045.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig9255:4326..8938+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACAGCATCAGCCATCCCGTTCGGCGTCATCGCCCCTGGTCGTCC
AGTTATAGCAGAATTTAGATGTCGACAGCATCAGCCATCCCGTTCGGCGT
CATCGCCCCTGGTCGTCCAGTTATAGCAGAATTTAGGGCGATAGATTCAT
CCAAGTGCGTGACTGAGATCGCCACTCCAAGAGAGGGCGATAGATTCATC
CAAGTGCGTGACTGAGATCGCCACTCCAAGAGAGGTGGATGAGGTGGTAT
TTTTCTTGTTACCGAACTCCCCAGTGCCTCCAGGACACGCTGCCGTACTT
TATTTCAGTATGCCAAATGCCACAACAGGAGCTTATGAACACTGGTGGAT
GAGGTGGTATTTTTCTTGTTACCGAACTCCCCAGTGCCTCCAGGACACGC
TGCCGTACTTTATTTCAGTATGCCAAATGCCACAACAGGAGCTTATGAAC
ACTGGGAAGTTCTCGGCGCGGTAGCGGCGGCTAAACCATCGGGTGTATTC
CGAACCGGCTGGCCGACCAACGAGCAGATACAATCATGCCCGGTTGCGCA
GCTGGGCGTTTCCATTGAATCGGAGGGAAGTTCTCGGCGCGGTAGCGGCG
GCTAAACCATCGGGTGTATTCCGAACCGGCTGGCCGACCAACGAGCAGAT
ACAATCATGCCCGGTTGCGCAGCTGGGCGTTTCCATTGAATCGGAGGACG
TCGTCACCAACCTTCGGCTGGGAGCTGGGGGTGTGCAAGATCGCAAGCAG
TTCGCACTCAAAATCGCGAAAGATCTTTTCCAGTTCATGTCATCCTTCAG
CACCAACACTCAGGCAGGGTCGGAGGTGATGGTTGTGCCGACAAACGTCT
TGGACAGGACGTCGTCACCAACCTTCGGCTGGGAGCTGGGGGTGTGCAAG
ATCGCAAGCAGTTCGCACTCAAAATCGCGAAAGATCTTTTCCAGTTCATG
TCATCCTTCAGCACCAACACTCAGGCAGGGTCGGAGGTGATGGTTGTGCC
GACAAACGTCTTGGACAGGTGGATAACCCGCTTTGAGAGCAAGTATAATC
GAGATCCGAACTTCATGCTCAAGGGATAGGTGGATAACCCGCTTTGAGAG
CAAGTATAATCGAGATCCGAACTTCATGCTCAAGGGATAG
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