mRNA_H-paniculata_contig9242.17035.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9242.17035.1
Unique NamemRNA_H-paniculata_contig9242.17035.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9242.17035.1 vs. uniprot
Match: A0A6H5L2L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L8_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.010e-37
Identity = 86/163 (52.76%), Postives = 101/163 (61.96%), Query Frame = 1 
Query:   97 GVEVYVWRGAESNPQMLELARTGARWLRDYEGWGAGTNTVVVDEGREPLELLRHLEVPGDGEREPPIYGDLTTPSPPTTAARNGPGCLFHHTVPTAYASTAAGGGALSFTPRHANAPLPSPAEAPTLSPMGPTPSPGGGSVGFSPSPY-EIGVSPAGDVRGGM 582
            GV VYVW+GA SN QMLELA+ GARWLRDYEGWG G++  VV+EG+EP E+LRHL+  G   REPP+YGDLT+PSP                                   R  +AP+ SPAE PTLSP+GP+PSPGG  V  SPSPY   GVSPAG  R G+
Sbjct:  597 GVYVYVWKGARSNAQMLELAKEGARWLRDYEGWGVGSSAPVVEEGQEPPEVLRHLDQTGGQAREPPVYGDLTSPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMMMGR--SAPMLSPAETPTLSPVGPSPSPGG--VSLSPSPYGSTGVSPAGASRFGL 755
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9242.17035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2L8_9PHAE1.010e-3752.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9242contigH-paniculata_contig9242:5215..7797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size589
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9242.17035.1prot_H-paniculata_contig9242.17035.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9242 5215..7797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.7231252-CDS-H-paniculata_contig9242:5214..53501622931150.7231252-CDS-H-paniculata_contig9242:5214..5350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9242 5215..5350 +
1691481613.2139807-CDS-H-paniculata_contig9242:5214..53501691481613.2139807-CDS-H-paniculata_contig9242:5214..5350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9242 5215..5350 +
1622931150.7381454-CDS-H-paniculata_contig9242:6346..64981622931150.7381454-CDS-H-paniculata_contig9242:6346..6498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9242 6347..6498 +
1691481613.2225888-CDS-H-paniculata_contig9242:6346..64981691481613.2225888-CDS-H-paniculata_contig9242:6346..6498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9242 6347..6498 +
1622931150.756026-CDS-H-paniculata_contig9242:7497..77971622931150.756026-CDS-H-paniculata_contig9242:7497..7797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9242 7498..7797 +
1691481613.230915-CDS-H-paniculata_contig9242:7497..77971691481613.230915-CDS-H-paniculata_contig9242:7497..7797Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9242 7498..7797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9242.17035.1

>prot_H-paniculata_contig9242.17035.1 ID=prot_H-paniculata_contig9242.17035.1|Name=mRNA_H-paniculata_contig9242.17035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
GKAKLGLGSATGGRSVEGFLGPAAKAVAAASTGVEVYVWRGAESNPQMLE
LARTGARWLRDYEGWGAGTNTVVVDEGREPLELLRHLEVPGDGEREPPIY
GDLTTPSPPTTAARNGPGCLFHHTVPTAYASTAAGGGALSFTPRHANAPL
PSPAEAPTLSPMGPTPSPGGGSVGFSPSPYEIGVSPAGDVRGGMGG
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mRNA from alignment at H-paniculata_contig9242:5215..7797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9242.17035.1 ID=mRNA_H-paniculata_contig9242.17035.1|Name=mRNA_H-paniculata_contig9242.17035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2583bp|location=Sequence derived from alignment at H-paniculata_contig9242:5215..7797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGGCTAAGCTGGGGTTGGGGTCGGCGACGGGCGGGCGGTCAGTGGA
GGGGTTTTTAGGGCCAGCGGCGAAGGCGGTGGCGGCGGCGTCGACGGGCG
TGGAGGTGTATGTGTGGCGGGGGGCTGAGAGCAATCGTGAGTGGAATGTG
TTGTTGCTGTCATTGTTGCTGGCATCGTTGTTGTTCTGAAGAAAGCTTGC
TGTCTCTTGCCCGGTGTGCGTTGGATGTTGCCAGAGATATTTTATGGGGG
GTGGTGCGGTTTTGTTCGTTCACATTCTCTTGTTTTTGTTTTTGTCTGGC
ATCGTTAGGGCATGATGTGGTATTTCGTCGGGGGGGGGGGGGTGGGGGAT
TGTCGAATTTTCCCGTGTAGTGTACTGTAGTGCATTGCAAGGGTTACAGT
GGAAGGAAGCACGTAGTAGCTTGTGCCACAGTAGCATCGGTTGTCACTAG
CGTTCGGGTTCATTCGTAGTGGTCAGCATTTTCCTGCCTTCGGTGCTTTG
CTTATTCAGGTCGGCTGTTGGCGCTACACTGCGGCACAAATCGGCGTGTA
CCAACTTACAACATGTGACATGTGTGCATTGCAATGTAAAGCGCAAATTC
GACCTTTTTTTCTTCTTTTTTTTCGGAGCTCGTTTGGCTCATGTGTTGTA
TTTATATTGTAACAGCGTCTCTTGCTTTGAAGCATGAATTGAAATATTTA
CATTTTTTTCAGATAGGCCGCTCAATGTACATGGCCCAGATACGGTCAGT
TTTGCCATTTTTTCTGTTGTCAAACGCCAATGAGTACATCTGGATCTCTG
TGAATCCTGTTTTTTTTTTAGTCGAGATTCGTTGGGCATATATGAGTTGT
TCCCCCCCCCCCCCCCATACTTGGAAGATGACTTTTCTTACGTGAACGAC
TGTTGGATTAATCGTGTTTTGAAAAAAAAGAAGTTTATCTGCAGTCGTTT
TTCGTGGCTGTTTTTTTGTTTTACGATGCAGAAAGGAAAACCGTTGCACA
GCACCTCAAATGATGTCGATGGCATGAAGACGCCACTAGCATCACCGCAA
CTAGCACCGCCGTCATGTTATTTTTTATTTATTCTGATTTAATTCGATTT
GGGTTCATTATTTCGTGTCCGTTTTTTCACAGCACAAATGTTAGAGCTGG
CCAGGACAGGGGCGCGTTGGCTTCGCGATTACGAGGGTTGGGGCGCGGGA
ACAAATACTGTCGTTGTCGATGAGGGGCGTGAGCCGCTGGAGTTGTTGCG
GCATCTGGAGGTCCCCGGGGACGGAGAGCGAGAAGTGAGTTTAGTACGTG
GTAATGTTCTGCGTTACTGCTACGCTACTTCCACTAGTGAGTGCCGTCTG
GGGCTACCGGCTAGGCCTGTGTAGCCCTCGGCGTTTGCTCTTCGACTTAT
TTTGACGACTCACTTCGTTGGCAACAAGCCTGCCTCTTTGTGCGTGAAGA
TTTCGCTTTTTTGGATTTGCTCGAGTGTAGTAGCTCTGAAGCAGATTTGA
ATATGAAAGGTCCAAAACGATGACTATACATGTCCCATCTCTATGACATC
ATCAACGCTAACTGCCAACTAGGTACGAGGAATAATGTACTTGTTGGTTT
CATGTGTTTATATAGCTGACCGAATACTGGCGACTTGGAATATTGGGTAC
TAATTGTTCATTTTGGGTGTTGTTTTGTACTTCAACTTGAAGGACAGGTT
TCACAGAGTACAGACATGTATGTCTGTATCATAGAAACATGTGTAATTGT
GTCGCCCTCAAGGGATAGAACGGGACGTTTTTATAGCGTCCAAGATATTT
TCCTTCCTCCGGGAGCTGTTTTAGTGTATAGAGGCGTGTAACTATCTCCG
CTTCTTTTTTTTTTATATAATCCTGCAGTGTTTTTGGAGTTGATCCCCGA
TTTTGTAAGGAAATTGGTGAAATCCATCGGGAGTATGCGCGGCGCAAAAA
AAAGATACCTGCCGAAAAAAGGGCCATATCTTTGTCCCTTTTTTGGATTT
TCCCAATGGAAAATGTGAAAATGGTCAATGGTAGCTAAATATCAAGCGGT
CATCACTCCTGATACACAAATCGAATCGAAATGGTTTTCAGGATAGCGCC
GATGAGTCAAACGGATTTTAGCTCGTCCACGATCCCAACCTCGGCCTCTG
AACACTCTTAGTTCTGGAGAGGTAATCTGCCGAATACAACCGACTTTGGT
TGTGGCACGGAGGAAGTATTCACCTATTCCCCTCTTCTCATCTCCCCCTC
ACCTACCTCCTCCCGTCCATTACGCTGCTGCAGCCCCCCATCTACGGAGA
TCTGACGACACCGTCACCCCCCACCACAGCCGCGCGCAATGGCCCCGGAT
GCCTTTTCCACCACACCGTCCCGACAGCGTACGCGTCAACGGCGGCGGGG
GGAGGGGCGTTGTCCTTCACTCCACGTCACGCGAACGCACCGCTGCCCTC
TCCGGCCGAAGCACCGACCCTATCCCCCATGGGGCCTACCCCATCTCCGG
GGGGCGGCAGCGTGGGCTTCTCCCCGTCGCCCTATGAGATTGGAGTGTCT
CCCGCTGGAGACGTGCGGGGTGGGATGGGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig9242:5215..7797+

>mRNA_H-paniculata_contig9242.17035.1 ID=mRNA_H-paniculata_contig9242.17035.1|Name=mRNA_H-paniculata_contig9242.17035.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig9242:5215..7797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAAGGCTAAGCTGGGGTTGGGGTCGGCGACGGGCGGGCGGTCAGTGGA
GGGGTTTTTAGGGCCAGCGGCGAAGGCGGTGGCGGCGGCGTCGACGGGCG
TGGAGGTGTATGTGTGGCGGGGGGCTGAGAGCAATCGGGAAGGCTAAGCT
GGGGTTGGGGTCGGCGACGGGCGGGCGGTCAGTGGAGGGGTTTTTAGGGC
CAGCGGCGAAGGCGGTGGCGGCGGCGTCGACGGGCGTGGAGGTGTATGTG
TGGCGGGGGGCTGAGAGCAATCCACAAATGTTAGAGCTGGCCAGGACAGG
GGCGCGTTGGCTTCGCGATTACGAGGGTTGGGGCGCGGGAACAAATACTG
TCGTTGTCGATGAGGGGCGTGAGCCGCTGGAGTTGTTGCGGCATCTGGAG
GTCCCCGGGGACGGAGAGCGAGAACACAAATGTTAGAGCTGGCCAGGACA
GGGGCGCGTTGGCTTCGCGATTACGAGGGTTGGGGCGCGGGAACAAATAC
TGTCGTTGTCGATGAGGGGCGTGAGCCGCTGGAGTTGTTGCGGCATCTGG
AGGTCCCCGGGGACGGAGAGCGAGAACCCCCCATCTACGGAGATCTGACG
ACACCGTCACCCCCCACCACAGCCGCGCGCAATGGCCCCGGATGCCTTTT
CCACCACACCGTCCCGACAGCGTACGCGTCAACGGCGGCGGGGGGAGGGG
CGTTGTCCTTCACTCCACGTCACGCGAACGCACCGCTGCCCTCTCCGGCC
GAAGCACCGACCCTATCCCCCATGGGGCCTACCCCATCTCCGGGGGGCGG
CAGCGTGGGCTTCTCCCCGTCGCCCTATGAGATTGGAGTGTCTCCCGCTG
GAGACGTGCGGGGTGGGATGGGGGGCCCCCCCATCTACGGAGATCTGACG
ACACCGTCACCCCCCACCACAGCCGCGCGCAATGGCCCCGGATGCCTTTT
CCACCACACCGTCCCGACAGCGTACGCGTCAACGGCGGCGGGGGGAGGGG
CGTTGTCCTTCACTCCACGTCACGCGAACGCACCGCTGCCCTCTCCGGCC
GAAGCACCGACCCTATCCCCCATGGGGCCTACCCCATCTCCGGGGGGCGG
CAGCGTGGGCTTCTCCCCGTCGCCCTATGAGATTGGAGTGTCTCCCGCTG
GAGACGTGCGGGGTGGGATGGGGGGC
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