mRNA_H-paniculata_contig9223.17022.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9223.17022.1
Unique NamemRNA_H-paniculata_contig9223.17022.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9223.17022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9223contigH-paniculata_contig9223:5509..6141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size463
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9223.17022.1prot_H-paniculata_contig9223.17022.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9223 5686..6141 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.0558069-UTR-H-paniculata_contig9223:5508..56851622931148.0558069-UTR-H-paniculata_contig9223:5508..5685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9223 5509..5685 +
1691481612.3591363-UTR-H-paniculata_contig9223:5508..56851691481612.3591363-UTR-H-paniculata_contig9223:5508..5685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9223 5509..5685 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.0709805-CDS-H-paniculata_contig9223:5685..57211622931148.0709805-CDS-H-paniculata_contig9223:5685..5721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9223 5686..5721 +
1691481612.3709602-CDS-H-paniculata_contig9223:5685..57211691481612.3709602-CDS-H-paniculata_contig9223:5685..5721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9223 5686..5721 +
1622931148.0884566-CDS-H-paniculata_contig9223:5892..61411622931148.0884566-CDS-H-paniculata_contig9223:5892..6141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9223 5893..6141 +
1691481612.3802094-CDS-H-paniculata_contig9223:5892..61411691481612.3802094-CDS-H-paniculata_contig9223:5892..6141Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9223 5893..6141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9223.17022.1

>prot_H-paniculata_contig9223.17022.1 ID=prot_H-paniculata_contig9223.17022.1|Name=mRNA_H-paniculata_contig9223.17022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MWEICARVEIKMKSSCGARNGGNHRKVFSYRRGVQGRLRLIGTLKRSTPT
ERMTQLYFVGLRCYRRARSMSAHFGTSGAGAAVEETAVQGVEPTP
back to top

mRNA from alignment at H-paniculata_contig9223:5509..6141+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9223.17022.1 ID=mRNA_H-paniculata_contig9223.17022.1|Name=mRNA_H-paniculata_contig9223.17022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=633bp|location=Sequence derived from alignment at H-paniculata_contig9223:5509..6141+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAAGATAGACTACCACGCCGGGGGTGACATCAATCGGGAAGTACTGGA
TATTATGGAGTCCGACACAAGCTGTAACAAGCCGATTACAAGGACCTGAC
TGAGCTTCTCGGGAAAGAACGCTGCCAGTTGCAGGGGAGTAGATGTAGTG
TCTGTAGAACCAAGGGCGAATACAGCAATGTGGGAAATCTGTGCGAGGGT
GGAAATCAAGATGGCCTCCATCGACCAACTACCTACGTATTTTCTTCGAC
TTCTTACTGGAGAGTCAAAAGTAAAGGGCACGCTCGCAGGGTGGGGGTAC
CCTGCTGGCGAGCACTAAAGAACCAGCATCCGAAGAACGAACGAGCGCCT
GCCTCACTGAAGTGGAAGCTGGATTGACTGGAAGAAAAGCAGTTGCGGCG
CGCGGAACGGCGGAAACCACCGCAAGGTTTTCAGTTACAGAAGAGGAGTG
CAGGGCCGGCTAAGATTGATTGGGACCCTGAAAAGATCTACCCCAACAGA
GCGGATGACGCAGCTATATTTCGTCGGATTGAGATGCTACCGTCGCGCAC
GGAGTATGAGCGCCCATTTTGGGACGTCGGGCGCTGGTGCAGCTGTGGAG
GAGACCGCCGTGCAAGGAGTTGAACCAACTCCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig9223:5509..6141+

>mRNA_H-paniculata_contig9223.17022.1 ID=mRNA_H-paniculata_contig9223.17022.1|Name=mRNA_H-paniculata_contig9223.17022.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig9223:5509..6141+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGAAATCTGTGCGAGGGTGGAAATCAAGATGATGTGGGAAATCTG
TGCGAGGGTGGAAATCAAGATGAAAAGCAGTTGCGGCGCGCGGAACGGCG
GAAACCACCGCAAGGTTTTCAGTTACAGAAGAGGAGTGCAGGGCCGGCTA
AGATTGATTGGGACCCTGAAAAGATCTACCCCAACAGAGCGGATGACGCA
GCTATATTTCGTCGGATTGAGATGCTACCGTCGCGCACGGAGTATGAGCG
CCCATTTTGGGACGTCGGGCGCTGGTGCAGCTGTGGAGGAGACCGCCGTG
CAAGGAGTTGAACCAACTCCCAAAAGCAGTTGCGGCGCGCGGAACGGCGG
AAACCACCGCAAGGTTTTCAGTTACAGAAGAGGAGTGCAGGGCCGGCTAA
GATTGATTGGGACCCTGAAAAGATCTACCCCAACAGAGCGGATGACGCAG
CTATATTTCGTCGGATTGAGATGCTACCGTCGCGCACGGAGTATGAGCGC
CCATTTTGGGACGTCGGGCGCTGGTGCAGCTGTGGAGGAGACCGCCGTGC
AAGGAGTTGAACCAACTCCC
back to top