prot_H-paniculata_contig9183.16990.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9183.16990.1
Unique Nameprot_H-paniculata_contig9183.16990.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length634
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9183.16990.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 360..408
e-value: 4.4E-12
score: 46.0
coord: 290..337
e-value: 1.3E-11
score: 44.5
coord: 465..514
e-value: 2.6E-12
score: 46.7
coord: 224..269
e-value: 2.8E-11
score: 43.4
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 433..462
e-value: 0.042
score: 14.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 524..584
e-value: 1.5E-12
score: 47.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 503..537
e-value: 2.9E-7
score: 28.2
coord: 258..292
e-value: 9.6E-8
score: 29.8
coord: 328..362
e-value: 1.1E-5
score: 23.2
coord: 468..502
e-value: 5.2E-8
score: 30.6
coord: 538..572
e-value: 2.3E-6
score: 25.4
coord: 573..607
e-value: 6.6E-8
score: 30.3
coord: 363..396
e-value: 6.1E-10
score: 36.7
coord: 399..431
e-value: 4.7E-6
score: 24.4
coord: 293..327
e-value: 7.8E-5
score: 20.6
coord: 224..257
e-value: 2.5E-6
score: 25.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 221..255
score: 10.819
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 396..430
score: 11.97
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 361..395
score: 13.844
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 536..570
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 326..360
score: 11.038
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 256..290
score: 12.441
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 291..325
score: 10.676
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 431..465
score: 9.734
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 466..500
score: 12.299
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 501..535
score: 12.112
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 571..605
score: 12.057
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 511..620
e-value: 2.6E-34
score: 120.1
coord: 406..510
e-value: 8.6E-34
score: 118.5
coord: 305..405
e-value: 7.3E-34
score: 118.7
coord: 155..304
e-value: 3.4E-31
score: 110.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 312..467
coord: 223..353
coord: 355..502
coord: 462..614

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9183contigH-paniculata_contig9183:5749..7650 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9183.16990.1mRNA_H-paniculata_contig9183.16990.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9183 3979..8391 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9183.16990.1 ID=prot_H-paniculata_contig9183.16990.1|Name=mRNA_H-paniculata_contig9183.16990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=634bp
MTSNFVTHAAKNSAHAIRCSTSRLPNAVGPARLWQAGMSSGSWSDEYAGE
KAGSTELPEASRKHTASPSFPAEPSRKVSGRLRNESLDAPVDKSSGQSRV
QYRWRKVEDMGDRGRTSNLQHTKERSMGSKKTGQGFRRPRVVGNGYYESL
PKDTGTNWAAIRRQREDSERGPGARKSRSPTARQWLYIGQLSEAARNSDW
EAADEVLRNAVACPDSASVVSTRMYNLALNVLANCKKWEKALAVLDTMRE
NGVNPNVYTYNTAIKACANGGAWKLALDLLQRMQKEGVVPDVVSYNTAMK
ACGDKLQWQHALALLRQMPAEGLAPDVYTYNTAIKACGDGGEWERALNLL
GKMDMEKVMPDVVTYNTAIGACAKCGQWEKALELLAQMRAEGFAPDGRSY
NLTIRALGKGGQWEEALEMLTSMEGEGVPPSIISYNAAIAACGEGGQWQR
AIGLLPQMRGANVIPNVVSYSAVITAFGKGGQWQRALDMLSEMEAQGVTP
DVVSFNAVITACANCGQWEKGLDVLREIEAAGLEPNVVSYNAAMKACEDC
GEGEHAVDVLRQMQEKGIAPNVVSYSYAVAACGSEGKWDEALDVLRQMRA
DGVVPNELGYSTALDGCSNWWVPGERDEPLQQE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf