mRNA_H-paniculata_contig918.16988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig918.16988.1
Unique NamemRNA_H-paniculata_contig918.16988.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig918.16988.1 vs. uniprot
Match: D7G670_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G670_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 2.270e-38
Identity = 117/317 (36.91%), Postives = 148/317 (46.69%), Query Frame = 1 
Query:    1 MLAMESSLTDCGSDDWSVDSDYAFQDFVDDDISPTINHDYTTFSQTPLARLRQNQGRVCEGADDT---SVITALGNRIPDKCSGGVVENDSLASGNLDQAILGGSSAQGFQSEAAKKPAVMTARNSSGREIAPEHDRLRCAKDAA--DGVCPSREDTRHLGDPGSSTENVHILRVEQRMFLKAAFQLLEERDRRSTALSGSHPVFSNWMGLGVTTPEEDNILGAATFNNVGGXXXXXXRGXXXXXXXXXXXXXXXXGFRYQESALIRRGILKSGTLRKATARCVGRLETTTWKTKNIELSPGRFAYADGGS-VLGKK 933
            M+A+ESS+  CGSDDWSVDSDYAFQDF DD     + H      Q   AR  +++  + + +  T   S +   G  I  +  G + +N    +  L +       A+     A    A          E      R   A +A   +   P   +TR  GDPGSS+++ HILR+EQRMFLKAAFQLLEERDR   A  GS      W   G               +N+         G                          R  ILKSGTLRKATAR VGRLE TTWKTK +EL+PG FAY+D G  V+GK+
Sbjct:    1 MIALESSVLGCGSDDWSVDSDYAFQDFADD-----VKH-----HQQQQARHEKSEQNLLQSSSPTRERSAVPNPGTPINKRVVGSLDDNSRAETTELHEHPEAAEGARADTLTAGGAQAXXXXXXXXPEEGEVGGSRRGSASEAGKDNRHHPVLSNTRLFGDPGSSSDSTHILRLEQRMFLKAAFQLLEERDRLFPASIGS------WGTAGGGWVXXXXXXXXXXXSNLRDRRGGYVNGGAVSAGKAGEGARFHFQQHEPNFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIVIGKR 301
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BLAST of mRNA_H-paniculata_contig918.16988.1 vs. uniprot
Match: A0A6H5KYB1_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.070e-14
Identity = 58/139 (41.73%), Postives = 68/139 (48.92%), Query Frame = 1 
Query:  520 MFLKAAFQLLEERDRRSTALSGSHPVFSNWMGLGVTTPEEDNILGAATFNNVGGXXXXXXRGXXXXXXXXXXXXXXXXGFRYQESALI----RRGILKSGTLRKATARCVGRLETTTWKTKNIELSPGRFAYADGGSVL 924
            MFLKAAFQLLEERDR   A  GS   +    G  V           +   +  G       G                 F +Q+        R  ILKSGTLRKATAR VGRLE TTWKTK +EL+PG FAY+D G ++
Sbjct:    1 MFLKAAFQLLEERDRLFPASIGS---WGTAAGGWVPXXXXXXXXXXSNLRDQRG-------GYVNGAAVSAGKAGEGPRFHFQQHEPTFYANRPRILKSGTLRKATARSVGRLEKTTWKTKYVELTPGSFAYSDNGPIV 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig918.16988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G670_ECTSI2.270e-3836.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYB1_9PHAE4.070e-1441.73PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig918contigH-paniculata_contig918:11015..13180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_009690.1
Exons2
Model size936
Cds size936
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.2940676-CDS-H-paniculata_contig918:11014..115451622931143.2940676-CDS-H-paniculata_contig918:11014..11545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig918 11015..11545 +
1691481610.2947736-CDS-H-paniculata_contig918:11014..115451691481610.2947736-CDS-H-paniculata_contig918:11014..11545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig918 11015..11545 +
1622931143.312199-CDS-H-paniculata_contig918:12775..131801622931143.312199-CDS-H-paniculata_contig918:12775..13180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig918 12776..13180 +
1691481610.3120499-CDS-H-paniculata_contig918:12775..131801691481610.3120499-CDS-H-paniculata_contig918:12775..13180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig918 12776..13180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig918.16988.1prot_H-paniculata_contig918.16988.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig918 11015..13180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig918.16988.1

>prot_H-paniculata_contig918.16988.1 ID=prot_H-paniculata_contig918.16988.1|Name=mRNA_H-paniculata_contig918.16988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
MLAMESSLTDCGSDDWSVDSDYAFQDFVDDDISPTINHDYTTFSQTPLAR
LRQNQGRVCEGADDTSVITALGNRIPDKCSGGVVENDSLASGNLDQAILG
GSSAQGFQSEAAKKPAVMTARNSSGREIAPEHDRLRCAKDAADGVCPSRE
DTRHLGDPGSSTENVHILRVEQRMFLKAAFQLLEERDRRSTALSGSHPVF
SNWMGLGVTTPEEDNILGAATFNNVGGGGGSSSRGRGGAGGRGAGGAGGG
GGFRYQESALIRRGILKSGTLRKATARCVGRLETTTWKTKNIELSPGRFA
YADGGSVLGKK*
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mRNA from alignment at H-paniculata_contig918:11015..13180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig918.16988.1 ID=mRNA_H-paniculata_contig918.16988.1|Name=mRNA_H-paniculata_contig918.16988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig918:11015..13180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGCCATGGAGAGCTCTCTTACGGACTGTGGCAGCGACGACTGGTC
AGTGGACAGCGACTATGCTTTTCAGGATTTCGTCGACGACGACATATCAC
CAACGATCAATCACGATTACACTACTTTCTCACAGACCCCGCTCGCGAGA
CTCCGTCAGAACCAAGGACGGGTATGCGAAGGCGCAGATGATACCAGTGT
CATCACCGCGCTGGGAAATAGGATCCCCGATAAATGCAGCGGTGGTGTTG
TCGAGAACGACAGTCTCGCCAGCGGTAACCTTGATCAAGCCATCTTAGGC
GGAAGTTCTGCCCAGGGTTTTCAGAGCGAAGCCGCAAAAAAGCCGGCAGT
GATGACAGCAAGAAATAGTAGCGGCAGAGAGATAGCGCCTGAACATGATC
GCTTGAGATGTGCGAAAGACGCCGCAGACGGCGTCTGTCCGTCGAGAGAG
GACACCCGGCACCTCGGGGATCCTGGGAGCAGCACGGAGAATGTGCACAT
CCTTCGCGTGGAACAGCGTATGTTTCTCAAGGTGTATGCTTTGTAGCAAT
CGTGGTAGGCGTGTTTCCCTTATTAATTTGTCATGACATCGATGAGCCGG
CCTTGACTGTAAGGGCCGTGCTAAATAAGCAAGCCTGATTTTCCGTTTTC
CGATTTTTATTCAAGAGTTTGTATACCGTAACCATCGTATTTAAAAATAA
TTTTCGAATTAAATGGTTGCGGTAAACAAACTCTCCAACGCTATTCGGGA
AACGGAAAACCAAGCTCGCTTGCGTAGCACGACTATAAGTAGAAGCCAGA
GGTCGACATTGAACGAAGCTAGTAATGTCTTCGGTGGTCGGTCGATCTGT
GCCTCTCCCTGATAGTATACAACATGGACATGACGCAATCATGCAATTGG
CTAACCCTATTAGCGTCCTATTTCGAAGAAAAGAAAGCTCCCTCTTCATC
AATATCCACTTGCTCGTAGTTCGGTCAGTGCGTCAAGTCCTTGCGAGGTC
GTTAAATCAAAAGCTGCGAATTGACGAAGGCTTTATTAAGACTGACGAAA
GCACGAAAAAAAAATGTCAGTAACGATCGTAAATCGCTCTTACAATATTT
TCAAAACGAATCACGGGGACGGGGAGTAGATTCTTTACGTTCGTCGATCG
ACCGTTGCTCTCTTCACTGAAAATATGCTCCGTTCGTTGTTGACCGAAGG
CCGTCTACCTCTTGTCCTACGCATGGGCCTTTCCCGCCTAGTACGGTTGC
TTCTAGGGACCAGGAACAATGCTGAAGTAGGACTTGTAGTGGCAACGAAC
CTGTCGAGGGTGCGGCATCACCCTTCTACGGAAACGCCGTTCACCTCCCT
TGAACCGATCTGAAAACCGAGCCACGCAACACTGTAAGGATATTATTCTG
GGACATACCCGATCAAACACCGACTATCACGGCAACAGCAACAGCACAGT
CTGTAGCATCGTCACCATCGTTCACAGGCCTCTCCACCGGTGCTGTGGCA
CCTGCAACTCACTTGCAACCTCGTGGTACGCAACAATCATTTTGACCGGA
ACATCGTATTAGTCGGTCGTGTCGGGTTACGGTCTGGTAGTGTCGATGTC
ATTGTCCATTCATGGCTGCGTGGTGATAACTGAGAGCCCATCACTTGCGA
AGGATCGCTGATATCGTGCTTAACACGAAGCCTCATGTTCCACTGTCCGA
TCTCTTTGCCGACCCCTCTCCCCTGCCCAATACCCAAACCTGAACTGAAT
CGACCTTTCAGGCCGCCTTCCAACTCTTGGAAGAGCGTGATCGTCGGTCA
ACAGCATTGAGCGGATCACACCCTGTTTTCAGTAACTGGATGGGGTTAGG
CGTGACAACACCAGAAGAGGACAATATCCTCGGAGCAGCGACGTTCAACA
ATGTCGGCGGGGGGGGCGGGAGTAGCTCGCGGGGGCGGGGTGGTGCGGGG
GGTAGAGGGGCAGGAGGGGCAGGAGGGGGGGGTGGGTTTCGATATCAGGA
ATCGGCGCTGATACGACGAGGGATACTTAAGTCCGGAACACTCAGGAAGG
CGACGGCAAGGTGTGTTGGCCGGCTAGAGACAACCACTTGGAAGACTAAA
AATATTGAACTCTCACCTGGGAGGTTTGCCTACGCAGATGGAGGCTCGGT
GCTCGGGAAAAAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig918:11015..13180+

>mRNA_H-paniculata_contig918.16988.1 ID=mRNA_H-paniculata_contig918.16988.1|Name=mRNA_H-paniculata_contig918.16988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig918:11015..13180+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGCCATGGAGAGCTCTCTTACGGACTGTGGCAGCGACGACTGGTC
AGTGGACAGCGACTATGCTTTTCAGGATTTCGTCGACGACGACATATCAC
CAACGATCAATCACGATTACACTACTTTCTCACAGACCCCGCTCGCGAGA
CTCCGTCAGAACCAAGGACGGGTATGCGAAGGCGCAGATGATACCAGTGT
CATCACCGCGCTGGGAAATAGGATCCCCGATAAATGCAGCGGTGGTGTTG
TCGAGAACGACAGTCTCGCCAGCGGTAACCTTGATCAAGCCATCTTAGGC
GGAAGTTCTGCCCAGGGTTTTCAGAGCGAAGCCGCAAAAAAGCCGGCAGT
GATGACAGCAAGAAATAGTAGCGGCAGAGAGATAGCGCCTGAACATGATC
GCTTGAGATGTGCGAAAGACGCCGCAGACGGCGTCTGTCCGTCGAGAGAG
GACACCCGGCACCTCGGGGATCCTGGGAGCAGCACGGAGAATGTGCACAT
CCTTCGCGTGGAACAGCGTATGTTTCTCAAGATGTTGGCCATGGAGAGCT
CTCTTACGGACTGTGGCAGCGACGACTGGTCAGTGGACAGCGACTATGCT
TTTCAGGATTTCGTCGACGACGACATATCACCAACGATCAATCACGATTA
CACTACTTTCTCACAGACCCCGCTCGCGAGACTCCGTCAGAACCAAGGAC
GGGTATGCGAAGGCGCAGATGATACCAGTGTCATCACCGCGCTGGGAAAT
AGGATCCCCGATAAATGCAGCGGTGGTGTTGTCGAGAACGACAGTCTCGC
CAGCGGTAACCTTGATCAAGCCATCTTAGGCGGAAGTTCTGCCCAGGGTT
TTCAGAGCGAAGCCGCAAAAAAGCCGGCAGTGATGACAGCAAGAAATAGT
AGCGGCAGAGAGATAGCGCCTGAACATGATCGCTTGAGATGTGCGAAAGA
CGCCGCAGACGGCGTCTGTCCGTCGAGAGAGGACACCCGGCACCTCGGGG
ATCCTGGGAGCAGCACGGAGAATGTGCACATCCTTCGCGTGGAACAGCGT
ATGTTTCTCAAGGCCGCCTTCCAACTCTTGGAAGAGCGTGATCGTCGGTC
AACAGCATTGAGCGGATCACACCCTGTTTTCAGTAACTGGATGGGGTTAG
GCGTGACAACACCAGAAGAGGACAATATCCTCGGAGCAGCGACGTTCAAC
AATGTCGGCGGGGGGGGCGGGAGTAGCTCGCGGGGGCGGGGTGGTGCGGG
GGGTAGAGGGGCAGGAGGGGCAGGAGGGGGGGGTGGGTTTCGATATCAGG
AATCGGCGCTGATACGACGAGGGATACTTAAGTCCGGAACACTCAGGAAG
GCGACGGCAAGGTGTGTTGGCCGGCTAGAGACAACCACTTGGAAGACTAA
AAATATTGAACTCTCACCTGGGAGGTTTGCCTACGCAGATGGAGGCTCGG
TGCTCGGGAAAAAGTGAGCCGCCTTCCAACTCTTGGAAGAGCGTGATCGT
CGGTCAACAGCATTGAGCGGATCACACCCTGTTTTCAGTAACTGGATGGG
GTTAGGCGTGACAACACCAGAAGAGGACAATATCCTCGGAGCAGCGACGT
TCAACAATGTCGGCGGGGGGGGCGGGAGTAGCTCGCGGGGGCGGGGTGGT
GCGGGGGGTAGAGGGGCAGGAGGGGCAGGAGGGGGGGGTGGGTTTCGATA
TCAGGAATCGGCGCTGATACGACGAGGGATACTTAAGTCCGGAACACTCA
GGAAGGCGACGGCAAGGTGTGTTGGCCGGCTAGAGACAACCACTTGGAAG
ACTAAAAATATTGAACTCTCACCTGGGAGGTTTGCCTACGCAGATGGAGG
CTCGGTGCTCGGGAAAAAGTGA
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