mRNA_H-paniculata_contig9173.16982.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9173.16982.1
Unique NamemRNA_H-paniculata_contig9173.16982.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A6H5L5U6_9PHAE (Peptidase_M3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.420e-16
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            LGILRGVDAISN +CSVIDAADF+RN HAD  FR AAD AF+ LAEYIQ
Sbjct:  185 LGILRGVDAISNTVCSVIDAADFVRNAHADEGFRYAADEAFSVLAEYIQ 233
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: D7FXL4_ECTSI (Mitochondrial intermediate peptidase (N-terminal) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.450e-16
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            LGILRGVDAISN +CSVIDAADF+RN HAD  FR AAD AF+ LAEYIQ
Sbjct:  185 LGILRGVDAISNTVCSVIDAADFVRNAHADEGFRVAADEAFSVLAEYIQ 233
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A067D9F5_SAPPC (Peptidase_M3 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D9F5_SAPPC)

HSP 1 Score: 59.3 bits (142), Expect = 5.330e-9
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            L  ++ +DAISN +C VIDAA+  RN H D+ FR AA A+F HL+ +IQ
Sbjct:   66 LRTIQDLDAISNAVCGVIDAAELCRNVHPDARFRAAASASFQHLSSFIQ 114
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A1Y1HTE0_KLENI (Zincin-like metalloproteases family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HTE0_KLENI)

HSP 1 Score: 55.1 bits (131), Expect = 1.670e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            + I+RG+D ISN +C+V+DAA+  RNTH D  + E AD A+  L+ Y+Q
Sbjct:  198 VAIVRGLDDISNTVCTVLDAAELCRNTHPDREWVEEADRAYLELSRYVQ 246
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A7S4QM36_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QM36_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 ILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYI 144
            IL  +D ISN +CSVIDAA+  R+THA S +R AA  +F  L++YI
Sbjct:  174 ILHSLDDISNIVCSVIDAAELCRSTHASSAWRNAASESFRILSDYI 219
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A6G0W9D9_9STRA (Peptidase_M3 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9D9_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            L  ++ +DAISN +C VIDAA+  RN H D  FR AA  +F+ L+  IQ
Sbjct:   70 LSTIQDLDAISNAVCVVIDAAELCRNVHPDEQFRSAASRSFSELSTLIQ 118
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A7S1VXM5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXM5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-6
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    7 ILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYI 144
            IL  +D ISN +CSVIDAA+  R+THA S +R AA  +F  L++YI
Sbjct:   75 ILHSLDDISNIVCSVIDAAELCRSTHASSAWRNAASESFRILSDYI 120
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A024UFZ7_9STRA (Peptidase_M3 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFZ7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-6
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            L  ++ +DAISN +C+VIDAA+  RN H D+ FR AA  +F  L+  IQ
Sbjct:   44 LSTIQDLDAISNEVCTVIDAAELCRNVHPDANFRAAASQSFIKLSTLIQ 92
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BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A485LD78_9STRA (Aste57867_19384 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LD78_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.790e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            L  ++ +DAISN +C VIDAA+  RN H D  FR+AA  +F  L+  IQ
Sbjct:   69 LSTIQDLDAISNAVCIVIDAAELCRNVHPDERFRKAATRSFAQLSTLIQ 117
[Close]
BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Match: A0A6A5A727_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A727_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.770e-6
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ 147
            L  ++ +DAISN +C VIDAA+  RN H D+ FR AA  +F  L+  IQ
Sbjct:  128 LSTIQDLDAISNEVCIVIDAAELCRNVHPDAQFRAAASNSFTQLSTLIQ 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9173.16982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5L5U6_9PHAE6.420e-1679.59Peptidase_M3 domain-containing protein n=1 Tax=Ect... [more]
D7FXL4_ECTSI6.450e-1679.59Mitochondrial intermediate peptidase (N-terminal) ... [more]
A0A067D9F5_SAPPC5.330e-953.06Peptidase_M3 domain-containing protein n=2 Tax=Sap... [more]
A0A1Y1HTE0_KLENI1.670e-748.98Zincin-like metalloproteases family protein n=1 Ta... [more]
A0A7S4QM36_9STRA1.090e-654.35Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A6G0W9D9_9STRA1.090e-648.98Peptidase_M3 domain-containing protein n=1 Tax=Aph... [more]
A0A7S1VXM5_9STRA1.090e-654.35Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A024UFZ7_9STRA2.790e-648.98Peptidase_M3 domain-containing protein n=1 Tax=Aph... [more]
A0A485LD78_9STRA2.790e-648.98Aste57867_19384 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A5A727_9STRA3.770e-648.98Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9173contigH-paniculata_contig9173:729..875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D7FXL4
KEGG koko:K01410
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.protein processing involved in protein targeting to mitochondrion
EggNOG OGsCOG0339@1,KOG2090@2759
EC3.4.24.59
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.6829941-CDS-H-paniculata_contig9173:728..8751622931142.6829941-CDS-H-paniculata_contig9173:728..875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9173 729..875 -
1691481610.0357792-CDS-H-paniculata_contig9173:728..8751691481610.0357792-CDS-H-paniculata_contig9173:728..875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9173 729..875 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9173.16982.1prot_H-paniculata_contig9173.16982.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9173 729..875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9173.16982.1

>prot_H-paniculata_contig9173.16982.1 ID=prot_H-paniculata_contig9173.16982.1|Name=mRNA_H-paniculata_contig9173.16982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
LGILRGVDAISNGICSVIDAADFLRNTHADSTFREAADAAFNHLAEYIQ
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mRNA from alignment at H-paniculata_contig9173:729..875-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9173.16982.1 ID=mRNA_H-paniculata_contig9173.16982.1|Name=mRNA_H-paniculata_contig9173.16982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig9173:729..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGCATTCTGCGAGGCGTGGATGCAATTAGCAATGGGATATGTTCTGT
CATCGATGCCGCGGATTTCTTGAGGAACACGCACGCCGACAGCACCTTCC
GCGAAGCGGCCGATGCGGCGTTCAACCATTTGGCGGAGTATATACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig9173:729..875-

>mRNA_H-paniculata_contig9173.16982.1 ID=mRNA_H-paniculata_contig9173.16982.1|Name=mRNA_H-paniculata_contig9173.16982.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig9173:729..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGGCATTCTGCGAGGCGTGGATGCAATTAGCAATGGGATATGTTCTGT
CATCGATGCCGCGGATTTCTTGAGGAACACGCACGCCGACAGCACCTTCC
GCGAAGCGGCCGATGCGGCGTTCAACCATTTGGCGGAGTATATACAGCTT
GGCATTCTGCGAGGCGTGGATGCAATTAGCAATGGGATATGTTCTGTCAT
CGATGCCGCGGATTTCTTGAGGAACACGCACGCCGACAGCACCTTCCGCG
AAGCGGCCGATGCGGCGTTCAACCATTTGGCGGAGTATATACAG
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