prot_H-paniculata_contig9165.16978.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig9165.16978.1
Unique Nameprot_H-paniculata_contig9165.16978.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length85
Homology
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8F0F7M3_9PHAE (Ribosomal protein S17 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.430e-51
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            MVKQQRLGIVISNKMQKSVVIAVEHRCKH+FYSK++VRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAV+VN
Sbjct:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHQFYSKIIVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A2R4QQ26_9PHAE (30S ribosomal protein S17 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ26_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.770e-44
Identity = 70/84 (83.33%), Postives = 81/84 (96.43%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            MVK QRLGIVISNKMQKSVV+AVE+RCKH+FYSKV+VRT+RYLAHDE N CNIGDEV++EESRPLSK+KRWV+KKILNK+V+VN
Sbjct:    1 MVKLQRLGIVISNKMQKSVVVAVEYRCKHQFYSKVVVRTKRYLAHDEENNCNIGDEVILEESRPLSKRKRWVVKKILNKSVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8F0FB08_9PHAE (Ribosomal protein S17 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB08_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.200e-42
Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            MVK QRLGIVIS+KMQKSVV+AVE+R +H+FYSK++VRT+RYLAHDE N CNIGDEVL+EESRPLSKKKRWV+K+ILNKAV+VN
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYRHQFYSKIIVRTKRYLAHDEINSCNIGDEVLLEESRPLSKKKRWVVKEILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A141BSN2_9PHAE (30S ribosomal protein S17, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.960e-42
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            MVK QRLGIVIS+KMQKSVV+AVE+R KH+FYSK++ RT+RYLAHDE N CNIGDEVLVEESRPLSK+KRW++KKILNKAVL++
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHQFYSKIVTRTKRYLAHDEENSCNIGDEVLVEESRPLSKRKRWIVKKILNKAVLIS 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: D1J743_ECTSI (30S ribosomal protein S17, chloroplastic n=34 Tax=Phaeophyceae TaxID=2870 RepID=D1J743_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.030e-41
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            MVK QRLGIVIS+KMQKSVV+AVE+R KH+FYSKV+VRT+RYLAHD  N CNIGD++L+EESRPLSKKKRWV+K+ILNKAV+VN
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A2I4Q2H6_9PHAE (30S ribosomal protein S17, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2H6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 7.400e-39
Identity = 62/83 (74.70%), Postives = 76/83 (91.57%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLV 83
            M KQQR+GI+ISNKMQKSVV+A+E+R KH+ YSK++V+T+RYLAHDE N CNIGDEVLVE SRPLSKKKRWV+++ILNKA L+
Sbjct:    1 MKKQQRVGIIISNKMQKSVVVAIEYRYKHKIYSKIIVKTKRYLAHDELNNCNIGDEVLVEASRPLSKKKRWVVREILNKAELI 83          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8E5XRI7_9PHAE (30S ribosomal protein S17, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI7_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.940e-35
Identity = 56/82 (68.29%), Postives = 72/82 (87.80%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVL 82
            M KQQ++GIVISNKMQKSVV+AVE+R +H  YSK ++ T+RY+AHD+ N CNIGDEVL+EESRPLSKKKRWV+K +L+ +V+
Sbjct:    1 MTKQQKVGIVISNKMQKSVVVAVEYRYRHAVYSKTVIETKRYMAHDQSNSCNIGDEVLLEESRPLSKKKRWVVKNVLSTSVI 82          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A7S6ZPB3_9STRA (30S ribosomal protein S17, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.030e-34
Identity = 52/84 (61.90%), Postives = 74/84 (88.10%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            M  Q+++GI+ISNKM KSV++AVE+R +H  YSK+++RTRRY+AHDE N CNIGD+V+++ESRPLSK+KRW++K+ILN ++L N
Sbjct:    1 MATQEKIGIIISNKMSKSVIVAVEYRYRHPIYSKIVLRTRRYMAHDEHNDCNIGDQVILQESRPLSKRKRWIVKEILNNSILSN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8E5BF39_9PHAE (Ribosomal protein S17 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BF39_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.230e-33
Identity = 51/79 (64.56%), Postives = 70/79 (88.61%), Query Frame = 0
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNK 79
            MV+ Q+LGIV+SNKMQKS+V+AVE+R KH+FYSK++++T+R+LAHD  N CN+GD+VL+EESRPLSK K W++KKI  +
Sbjct:    1 MVRVQKLGIVVSNKMQKSIVVAVEYRYKHKFYSKIVIQTKRFLAHDNNNKCNLGDKVLIEESRPLSKTKHWIVKKIFTR 79          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: B2XTE6_HETAK (30S ribosomal protein S17, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE6_HETAK)

HSP 1 Score: 113 bits (283), Expect = 3.290e-31
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 0
Query:    4 QQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 84
            ++R+G V+SNKM K++V+AVE R K   YSK  +RT+RYLAHDEFN CNIGD+VLV ESRPLS++KRWV+K++LNK    N
Sbjct:    4 KERIGTVVSNKMDKTIVVAVESRFKSPIYSKFKIRTKRYLAHDEFNKCNIGDQVLVSESRPLSRRKRWVLKEVLNKESFSN 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7M3_9PHAE3.430e-5195.24Ribosomal protein S17 n=1 Tax=Protohalopteris sp. ... [more]
A0A2R4QQ26_9PHAE1.770e-4483.3330S ribosomal protein S17 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0FB08_9PHAE1.200e-4280.95Ribosomal protein S17 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSN2_9PHAE6.960e-4279.7630S ribosomal protein S17, chloroplastic n=14 Tax=... [more]
D1J743_ECTSI4.030e-4179.7630S ribosomal protein S17, chloroplastic n=34 Tax=... [more]
A0A2I4Q2H6_9PHAE7.400e-3974.7030S ribosomal protein S17, chloroplastic n=1 Tax=D... [more]
A0A8E5XRI7_9PHAE4.940e-3568.2930S ribosomal protein S17, chloroplastic n=1 Tax=I... [more]
A0A7S6ZPB3_9STRA1.030e-3461.9030S ribosomal protein S17, chloroplastic n=1 Tax=S... [more]
A0A8E5BF39_9PHAE4.230e-3364.56Ribosomal protein S17 n=1 Tax=Phaeophyceae sp. Tax... [more]
B2XTE6_HETAK3.290e-3162.9630S ribosomal protein S17, chloroplastic n=2 Tax=H... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 54..64
score: 55.82
coord: 64..71
score: 67.5
coord: 22..45
score: 29.92
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 8..73
e-value: 1.5E-26
score: 92.3
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 3..80
NoneNo IPR availableGENE3D2.40.50.140coord: 2..82
e-value: 2.2E-29
score: 103.1
NoneNo IPR availablePANTHERPTHR10744:SF137S RIBOSOMAL PROTEIN S17, MITOCHONDRIALcoord: 3..80
NoneNo IPR availablePRODOMPD001295coord: 8..73
e-value: 1.0E-21
score: 248.0
IPR01998430S ribosomal protein S17TIGRFAMTIGR03635TIGR03635coord: 4..73
e-value: 2.0E-29
score: 99.4
IPR01998430S ribosomal protein S17HAMAPMF_01345_BRibosomal_S17_Bcoord: 3..78
score: 21.667
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 54..66
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 4..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9165contigH-paniculata_contig9165:831..1085 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9165.16978.1mRNA_H-paniculata_contig9165.16978.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig9165 831..1085 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig9165.16978.1 ID=prot_H-paniculata_contig9165.16978.1|Name=mRNA_H-paniculata_contig9165.16978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNL
CNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR019984Ribosomal_S17
IPR019979Ribosomal_S17_CS
IPR012340NA-bd_OB-fold