mRNA_H-paniculata_contig9165.16978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9165.16978.1
Unique NamemRNA_H-paniculata_contig9165.16978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8F0F7M3_9PHAE (Ribosomal protein S17 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.430e-51
Identity = 80/84 (95.24%), Postives = 84/84 (100.00%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            MVKQQRLGIVISNKMQKSVVIAVEHRCKH+FYSK++VRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAV+VN
Sbjct:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHQFYSKIIVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A2R4QQ26_9PHAE (30S ribosomal protein S17 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ26_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 1.770e-44
Identity = 70/84 (83.33%), Postives = 81/84 (96.43%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            MVK QRLGIVISNKMQKSVV+AVE+RCKH+FYSKV+VRT+RYLAHDE N CNIGDEV++EESRPLSK+KRWV+KKILNK+V+VN
Sbjct:    1 MVKLQRLGIVISNKMQKSVVVAVEYRCKHQFYSKVVVRTKRYLAHDEENNCNIGDEVILEESRPLSKRKRWVVKKILNKSVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8F0FB08_9PHAE (Ribosomal protein S17 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FB08_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.200e-42
Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            MVK QRLGIVIS+KMQKSVV+AVE+R +H+FYSK++VRT+RYLAHDE N CNIGDEVL+EESRPLSKKKRWV+K+ILNKAV+VN
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYRHQFYSKIIVRTKRYLAHDEINSCNIGDEVLLEESRPLSKKKRWVVKEILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A141BSN2_9PHAE (30S ribosomal protein S17, chloroplastic n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN2_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.960e-42
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            MVK QRLGIVIS+KMQKSVV+AVE+R KH+FYSK++ RT+RYLAHDE N CNIGDEVLVEESRPLSK+KRW++KKILNKAVL++
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHQFYSKIVTRTKRYLAHDEENSCNIGDEVLVEESRPLSKRKRWIVKKILNKAVLIS 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: D1J743_ECTSI (30S ribosomal protein S17, chloroplastic n=34 Tax=Phaeophyceae TaxID=2870 RepID=D1J743_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.030e-41
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            MVK QRLGIVIS+KMQKSVV+AVE+R KH+FYSKV+VRT+RYLAHD  N CNIGD++L+EESRPLSKKKRWV+K+ILNKAV+VN
Sbjct:    1 MVKLQRLGIVISDKMQKSVVVAVEYRYKHKFYSKVIVRTKRYLAHDPENSCNIGDQILLEESRPLSKKKRWVVKEILNKAVIVN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A2I4Q2H6_9PHAE (30S ribosomal protein S17, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2H6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 7.400e-39
Identity = 62/83 (74.70%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLV 249
            M KQQR+GI+ISNKMQKSVV+A+E+R KH+ YSK++V+T+RYLAHDE N CNIGDEVLVE SRPLSKKKRWV+++ILNKA L+
Sbjct:    1 MKKQQRVGIIISNKMQKSVVVAIEYRYKHKIYSKIIVKTKRYLAHDELNNCNIGDEVLVEASRPLSKKKRWVVREILNKAELI 83          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8E5XRI7_9PHAE (30S ribosomal protein S17, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI7_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 4.940e-35
Identity = 56/82 (68.29%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVL 246
            M KQQ++GIVISNKMQKSVV+AVE+R +H  YSK ++ T+RY+AHD+ N CNIGDEVL+EESRPLSKKKRWV+K +L+ +V+
Sbjct:    1 MTKQQKVGIVISNKMQKSVVVAVEYRYRHAVYSKTVIETKRYMAHDQSNSCNIGDEVLLEESRPLSKKKRWVVKNVLSTSVI 82          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A7S6ZPB3_9STRA (30S ribosomal protein S17, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.030e-34
Identity = 52/84 (61.90%), Postives = 74/84 (88.10%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            M  Q+++GI+ISNKM KSV++AVE+R +H  YSK+++RTRRY+AHDE N CNIGD+V+++ESRPLSK+KRW++K+ILN ++L N
Sbjct:    1 MATQEKIGIIISNKMSKSVIVAVEYRYRHPIYSKIVLRTRRYMAHDEHNDCNIGDQVILQESRPLSKRKRWIVKEILNNSILSN 84          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: A0A8E5BF39_9PHAE (Ribosomal protein S17 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5BF39_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.230e-33
Identity = 51/79 (64.56%), Postives = 70/79 (88.61%), Query Frame = 1
Query:    1 MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNK 237
            MV+ Q+LGIV+SNKMQKS+V+AVE+R KH+FYSK++++T+R+LAHD  N CN+GD+VL+EESRPLSK K W++KKI  +
Sbjct:    1 MVRVQKLGIVVSNKMQKSIVVAVEYRYKHKFYSKIVIQTKRFLAHDNNNKCNLGDKVLIEESRPLSKTKHWIVKKIFTR 79          
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Match: B2XTE6_HETAK (30S ribosomal protein S17, chloroplastic n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XTE6_HETAK)

HSP 1 Score: 113 bits (283), Expect = 3.290e-31
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   10 QQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN 252
            ++R+G V+SNKM K++V+AVE R K   YSK  +RT+RYLAHDEFN CNIGD+VLV ESRPLS++KRWV+K++LNK    N
Sbjct:    4 KERIGTVVSNKMDKTIVVAVESRFKSPIYSKFKIRTKRYLAHDEFNKCNIGDQVLVSESRPLSRRKRWVLKEVLNKESFSN 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9165.16978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7M3_9PHAE3.430e-5195.24Ribosomal protein S17 n=1 Tax=Protohalopteris sp. ... [more]
A0A2R4QQ26_9PHAE1.770e-4483.3330S ribosomal protein S17 n=3 Tax=Fucaceae TaxID=3... [more]
A0A8F0FB08_9PHAE1.200e-4280.95Ribosomal protein S17 n=1 Tax=Desmarestia aculeata... [more]
A0A141BSN2_9PHAE6.960e-4279.7630S ribosomal protein S17, chloroplastic n=14 Tax=... [more]
D1J743_ECTSI4.030e-4179.7630S ribosomal protein S17, chloroplastic n=34 Tax=... [more]
A0A2I4Q2H6_9PHAE7.400e-3974.7030S ribosomal protein S17, chloroplastic n=1 Tax=D... [more]
A0A8E5XRI7_9PHAE4.940e-3568.2930S ribosomal protein S17, chloroplastic n=1 Tax=I... [more]
A0A7S6ZPB3_9STRA1.030e-3461.9030S ribosomal protein S17, chloroplastic n=1 Tax=S... [more]
A0A8E5BF39_9PHAE4.230e-3364.56Ribosomal protein S17 n=1 Tax=Phaeophyceae sp. Tax... [more]
B2XTE6_HETAK3.290e-3162.9630S ribosomal protein S17, chloroplastic n=2 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9165contigH-paniculata_contig9165:831..1085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.5e-31
Seed eggNOG ortholog2880.D1J743
Preferred namerps17
KEGG koko:K02961
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0186@1,KOG1740@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.7329948-CDS-H-paniculata_contig9165:830..10851622931141.7329948-CDS-H-paniculata_contig9165:830..1085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9165 831..1085 +
1691481609.5360544-CDS-H-paniculata_contig9165:830..10851691481609.5360544-CDS-H-paniculata_contig9165:830..1085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9165 831..1085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9165.16978.1prot_H-paniculata_contig9165.16978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9165 831..1085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9165.16978.1

>prot_H-paniculata_contig9165.16978.1 ID=prot_H-paniculata_contig9165.16978.1|Name=mRNA_H-paniculata_contig9165.16978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MVKQQRLGIVISNKMQKSVVIAVEHRCKHEFYSKVMVRTRRYLAHDEFNL
CNIGDEVLVEESRPLSKKKRWVIKKILNKAVLVN*
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mRNA from alignment at H-paniculata_contig9165:831..1085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9165.16978.1 ID=mRNA_H-paniculata_contig9165.16978.1|Name=mRNA_H-paniculata_contig9165.16978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at H-paniculata_contig9165:831..1085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAAACAACAAAGACTTGGTATTGTAATAAGTAATAAAATGCAAAA AAGTGTTGTTATTGCAGTTGAACATCGTTGCAAACATGAGTTTTATTCAA AAGTTATGGTTCGGACAAGACGTTATTTAGCTCATGATGAATTTAATCTT TGTAATATTGGGGATGAAGTTTTAGTTGAAGAAAGTCGACCATTAAGCAA GAAAAAACGTTGGGTTATTAAAAAGATATTAAATAAAGCAGTACTAGTTA ATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig9165:831..1085+

>mRNA_H-paniculata_contig9165.16978.1 ID=mRNA_H-paniculata_contig9165.16978.1|Name=mRNA_H-paniculata_contig9165.16978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig9165:831..1085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTAAACAACAAAGACTTGGTATTGTAATAAGTAATAAAATGCAAAA
AAGTGTTGTTATTGCAGTTGAACATCGTTGCAAACATGAGTTTTATTCAA
AAGTTATGGTTCGGACAAGACGTTATTTAGCTCATGATGAATTTAATCTT
TGTAATATTGGGGATGAAGTTTTAGTTGAAGAAAGTCGACCATTAAGCAA
GAAAAAACGTTGGGTTATTAAAAAGATATTAAATAAAGCAGTACTAGTTA
ATTAAATGGTTAAACAACAAAGACTTGGTATTGTAATAAGTAATAAAATG
CAAAAAAGTGTTGTTATTGCAGTTGAACATCGTTGCAAACATGAGTTTTA
TTCAAAAGTTATGGTTCGGACAAGACGTTATTTAGCTCATGATGAATTTA
ATCTTTGTAATATTGGGGATGAAGTTTTAGTTGAAGAAAGTCGACCATTA
AGCAAGAAAAAACGTTGGGTTATTAAAAAGATATTAAATAAAGCAGTACT
AGTTAATTAA
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