mRNA_H-paniculata_contig12704.1696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12704.1696.1
Unique NamemRNA_H-paniculata_contig12704.1696.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12704.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12704contigH-paniculata_contig12704:7319..7423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_003350.1
Exons1
Model size105
Cds size105
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.4119377-CDS-H-paniculata_contig12704:7318..74231622928992.4119377-CDS-H-paniculata_contig12704:7318..7423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12704 7319..7423 +
1691480693.9901226-CDS-H-paniculata_contig12704:7318..74231691480693.9901226-CDS-H-paniculata_contig12704:7318..7423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12704 7319..7423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12704.1696.1prot_H-paniculata_contig12704.1696.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12704 7319..7423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12704.1696.1

>prot_H-paniculata_contig12704.1696.1 ID=prot_H-paniculata_contig12704.1696.1|Name=mRNA_H-paniculata_contig12704.1696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MVPKSKYFFEKLADGDEVVLLQNGPFTIYAECSTV
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mRNA from alignment at H-paniculata_contig12704:7319..7423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12704.1696.1 ID=mRNA_H-paniculata_contig12704.1696.1|Name=mRNA_H-paniculata_contig12704.1696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at H-paniculata_contig12704:7319..7423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCCGAAGTCCAAGTATTTCTTCGAAAAGCTGGCCGACGGCGACGA
AGTGGTTCTTCTTCAAAATGGCCCATTCACGATTTATGCTGAGTGCTCTA
CTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig12704:7319..7423+

>mRNA_H-paniculata_contig12704.1696.1 ID=mRNA_H-paniculata_contig12704.1696.1|Name=mRNA_H-paniculata_contig12704.1696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig12704:7319..7423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCCGAAGTCCAAGTATTTCTTCGAAAAGCTGGCCGACGGCGACGA
AGTGGTTCTTCTTCAAAATGGCCCATTCACGATTTATGCTGAGTGCTCTA
CTGTAATGGTTCCGAAGTCCAAGTATTTCTTCGAAAAGCTGGCCGACGGC
GACGAAGTGGTTCTTCTTCAAAATGGCCCATTCACGATTTATGCTGAGTG
CTCTACTGTA
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