mRNA_H-paniculata_contig9008.16858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9008.16858.1
Unique NamemRNA_H-paniculata_contig9008.16858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9008.16858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9008contigH-paniculata_contig9008:8616..9545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size930
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9008.16858.1prot_H-paniculata_contig9008.16858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9008 8776..9489 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.83309-UTR-H-paniculata_contig9008:8615..87751622931124.83309-UTR-H-paniculata_contig9008:8615..8775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9008 8616..8775 +
1691481601.5122209-UTR-H-paniculata_contig9008:8615..87751691481601.5122209-UTR-H-paniculata_contig9008:8615..8775Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9008 8616..8775 +
1622931124.870883-UTR-H-paniculata_contig9008:9489..95451622931124.870883-UTR-H-paniculata_contig9008:9489..9545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9008 9490..9545 +
1691481601.52851-UTR-H-paniculata_contig9008:9489..95451691481601.52851-UTR-H-paniculata_contig9008:9489..9545Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig9008 9490..9545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.855954-CDS-H-paniculata_contig9008:8775..94891622931124.855954-CDS-H-paniculata_contig9008:8775..9489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9008 8776..9489 +
1691481601.5207057-CDS-H-paniculata_contig9008:8775..94891691481601.5207057-CDS-H-paniculata_contig9008:8775..9489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9008 8776..9489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9008.16858.1

>prot_H-paniculata_contig9008.16858.1 ID=prot_H-paniculata_contig9008.16858.1|Name=mRNA_H-paniculata_contig9008.16858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=238bp
MWHNYMVTSLFIFYFLFFRLCLFVSYMCCTPLIHKPLAVHRKVRAAKSGD
VFGLPNLISEHRLDTSFVEIGSVCTEKSLEDIFPAFFSEPTCTDVSYLQL
TPQLPNILGVEAPVFGSSSSSSSNNVGRRRLNIYLYTPFRDSSRRKKNNR
HSKSSVYTHSEAVTCTARYHYIPHIQALRSSNSSEIQVATEKRKIWGEGE
GEGGRRPNTWTRMGTGSRRDWMHTSTKSPFGSDPLLQ*
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mRNA from alignment at H-paniculata_contig9008:8616..9545+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9008.16858.1 ID=mRNA_H-paniculata_contig9008.16858.1|Name=mRNA_H-paniculata_contig9008.16858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at H-paniculata_contig9008:8616..9545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACATGTACTGGAATTAGTATCGAAACCGGTGAATATACGACGGTGGCCT
GGTGTGCCCCCAACTTGCCGGGAATCCCTAAGTTGGCGTACCATTGCTGT
GGCTTCTGCACTGGTGTCGCGCTCAAAAAATAAAAAAATAAAAAACGGTG
CATCTACAAAATGTGGCATAACTACATGGTGACATCACTTTTTATTTTTT
ATTTCTTATTTTTTAGATTGTGCCTGTTTGTCTCCTACATGTGTTGTACC
CCTCTGATTCACAAGCCGCTAGCAGTCCATCGAAAGGTTCGTGCTGCCAA
ATCGGGCGACGTCTTCGGGTTGCCTAACTTGATTTCTGAGCATCGTTTAG
ATACTTCGTTTGTCGAAATTGGATCAGTGTGTACCGAGAAATCGTTGGAA
GACATATTCCCGGCGTTTTTCTCCGAACCAACCTGCACGGACGTTAGCTA
TTTACAACTAACCCCCCAACTGCCAAATATCCTGGGCGTGGAAGCTCCCG
TGTTCGGCAGCAGCAGCAGCAGCAGCAGCAACAATGTTGGACGAAGACGT
TTGAATATTTACTTGTATACACCTTTTCGCGATTCTTCACGCAGAAAAAA
GAATAATAGACACAGTAAGAGTAGCGTCTACACGCACTCAGAAGCCGTTA
CTTGCACCGCACGCTATCATTATATTCCTCACATACAAGCGCTACGCAGC
TCAAACTCAAGCGAAATCCAAGTGGCAACCGAGAAACGAAAAATATGGGG
CGAAGGGGAAGGGGAAGGGGGAAGGCGACCAAACACATGGACGCGTATGG
GAACCGGTTCTCGTCGCGATTGGATGCATACGTCTACCAAGAGTCCGTTC
GGCTCTGACCCGCTGCTTCAATGACGCCCTACCATGCATGACATCATCCA
ATCTGATCTTGTTCAACACCAACACATTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig9008:8616..9545+

>mRNA_H-paniculata_contig9008.16858.1 ID=mRNA_H-paniculata_contig9008.16858.1|Name=mRNA_H-paniculata_contig9008.16858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at H-paniculata_contig9008:8616..9545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGCATAACTACATGGTGACATCACTTTTTATTTTTTATTTCTTATT
TTTTAGATTGTGCCTGTTTGTCTCCTACATGTGTTGTACCCCTCTGATTC
ACAAGCCGCTAGCAGTCCATCGAAAGGTTCGTGCTGCCAAATCGGGCGAC
GTCTTCGGGTTGCCTAACTTGATTTCTGAGCATCGTTTAGATACTTCGTT
TGTCGAAATTGGATCAGTGTGTACCGAGAAATCGTTGGAAGACATATTCC
CGGCGTTTTTCTCCGAACCAACCTGCACGGACGTTAGCTATTTACAACTA
ACCCCCCAACTGCCAAATATCCTGGGCGTGGAAGCTCCCGTGTTCGGCAG
CAGCAGCAGCAGCAGCAGCAACAATGTTGGACGAAGACGTTTGAATATTT
ACTTGTATACACCTTTTCGCGATTCTTCACGCAGAAAAAAGAATAATAGA
CACAGTAAGAGTAGCGTCTACACGCACTCAGAAGCCGTTACTTGCACCGC
ACGCTATCATTATATTCCTCACATACAAGCGCTACGCAGCTCAAACTCAA
GCGAAATCCAAGTGGCAACCGAGAAACGAAAAATATGGGGCGAAGGGGAA
GGGGAAGGGGGAAGGCGACCAAACACATGGACGCGTATGGGAACCGGTTC
TCGTCGCGATTGGATGCATACGTCTACCAAGAGTCCGTTCGGCTCTGACC
CGCTGCTTCAATGAATGTGGCATAACTACATGGTGACATCACTTTTTATT
TTTTATTTCTTATTTTTTAGATTGTGCCTGTTTGTCTCCTACATGTGTTG
TACCCCTCTGATTCACAAGCCGCTAGCAGTCCATCGAAAGGTTCGTGCTG
CCAAATCGGGCGACGTCTTCGGGTTGCCTAACTTGATTTCTGAGCATCGT
TTAGATACTTCGTTTGTCGAAATTGGATCAGTGTGTACCGAGAAATCGTT
GGAAGACATATTCCCGGCGTTTTTCTCCGAACCAACCTGCACGGACGTTA
GCTATTTACAACTAACCCCCCAACTGCCAAATATCCTGGGCGTGGAAGCT
CCCGTGTTCGGCAGCAGCAGCAGCAGCAGCAGCAACAATGTTGGACGAAG
ACGTTTGAATATTTACTTGTATACACCTTTTCGCGATTCTTCACGCAGAA
AAAAGAATAATAGACACAGTAAGAGTAGCGTCTACACGCACTCAGAAGCC
GTTACTTGCACCGCACGCTATCATTATATTCCTCACATACAAGCGCTACG
CAGCTCAAACTCAAGCGAAATCCAAGTGGCAACCGAGAAACGAAAAATAT
GGGGCGAAGGGGAAGGGGAAGGGGGAAGGCGACCAAACACATGGACGCGT
ATGGGAACCGGTTCTCGTCGCGATTGGATGCATACGTCTACCAAGAGTCC
GTTCGGCTCTGACCCGCTGCTTCAATGA
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