mRNA_H-paniculata_contig8988.16838.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8988.16838.1
Unique NamemRNA_H-paniculata_contig8988.16838.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8988.16838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8988contigH-paniculata_contig8988:5956..8360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size631
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8988.16838.1prot_H-paniculata_contig8988.16838.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8988 5958..8360 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.7793026-CDS-H-paniculata_contig8988:5957..60641622931121.7793026-CDS-H-paniculata_contig8988:5957..6064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8988 5958..6064 -
1691481600.0634284-CDS-H-paniculata_contig8988:5957..60641691481600.0634284-CDS-H-paniculata_contig8988:5957..6064Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8988 5958..6064 -
1622931121.7969553-CDS-H-paniculata_contig8988:7005..72311622931121.7969553-CDS-H-paniculata_contig8988:7005..7231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8988 7006..7231 -
1691481600.072993-CDS-H-paniculata_contig8988:7005..72311691481600.072993-CDS-H-paniculata_contig8988:7005..7231Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8988 7006..7231 -
1622931121.8129797-CDS-H-paniculata_contig8988:8066..83601622931121.8129797-CDS-H-paniculata_contig8988:8066..8360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8988 8067..8360 -
1691481600.084378-CDS-H-paniculata_contig8988:8066..83601691481600.084378-CDS-H-paniculata_contig8988:8066..8360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8988 8067..8360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8988.16838.1

>prot_H-paniculata_contig8988.16838.1 ID=prot_H-paniculata_contig8988.16838.1|Name=mRNA_H-paniculata_contig8988.16838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
DSNNVLGCGTARRIASNDRNAPDLSTPHAPISNLPRKTTAPHPHILPWFA
MQPARGRGSPCGRPPARRRRRRRLCRQLSAGAPQAYRGVKLLGSFGVTFL
DPDQLAKLVAALDPKTPRIGTVMSTVNHLATFFADSLPCKMEQTLDIEEH
AVFKRAWVLFEEAMPDVNLHAFTGSRRQGGLSATRSRTSDVRGPAWRHAG
GTSIDGYVR
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mRNA from alignment at H-paniculata_contig8988:5956..8360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8988.16838.1 ID=mRNA_H-paniculata_contig8988.16838.1|Name=mRNA_H-paniculata_contig8988.16838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2405bp|location=Sequence derived from alignment at H-paniculata_contig8988:5956..8360- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCGAACAATGTGCTTGGGTGTGGGACAGCGCGACGGATTGCGTCCAA
TGATAGGAATGCACCCGACTTATCTACACCTCATGCCCCCATCTCCAACT
TGCCCAGAAAAACGACGGCCCCACATCCCCACATTTTGCCCTGGTTCGCC
ATGCAACCAGCGCGCGGAAGAGGAAGCCCGTGTGGACGACCCCCAGCGCG
TCGCAGACGCCGTCGACGACTTTGCCGTCAGCTATCGGCCGGAGCACCTC
AGGCATACCGTGGCGTTAAGCTTCTTGGCTCCTTTGGCGTGACGGTGAGC
ATCAGCTTGCCGCATGAGCAGGGGGTTTGTCGTTACTAAAAAATAACCCA
TCAGTCATGGGCTCTCTTTTTCAACATTTGCGCATATTTGGAGAGTATCT
TTGGTGGTCGTACGTTGTGATGCGTAAAAACCGCATATTCGACATTTATG
CCCCTTCTGTTGCTAGGCTACTGGAGTCCATGCTAAAACAGAATATAACA
ACATGGAGCGGGTATCCATTGCCTCCCTATCTACACCCAGAACACCACAA
ACGTTGCAACTGATCATGTACTACAAAGTATACTATAGGACAGAGTATAC
CGCGTTTCGTATAGATCAGCGCAGTACCGTTACGACAGCCGACCTCCACG
TCGTGCTTGGATCTGACGTTTTTCACCTCCTCATCGCGTACGCAACGTCC
TCAGTCCAACTCGCTGTAGTTTTTTCGATTTAGTGCTGCCCTTCGCTGCT
TCTGTTGTACGCTTCGGCCTCTCGTATTGAGGGTGAACAGCGTACTGTGC
GCGTAGACGTACTCGAGGCAATAGCGATTCGTGGAAGGAGTAGACGGCAT
ACTTCTCCTTCGATCTTTATACTGTTGCCGTTGTTTACTGGCAAGAACAC
CTGTCATAAAAATGTACGTCCCGCCGCGCCTGTACAGCACTTTCGCCGCA
AATTCCTCGCGTGCTGCTGCTGGCGTCGATTAGTAGCGGTAGAGCTTCCG
GTATCGCTCGGCGTCGAACTCTTGTATACAATGGGGGCCCTTGCATGAAT
ATAATAGACCGGTTGCCGACGACGCCTGCTCTCCTCTGCTCTCTTTCCCT
GACGCCCGTTCGCACGCCGCTCGTCTCAGTTTCTCGACCCGGATCAACTG
GCCAAGCTCGTAGCCGCCTTGGATCCGAAGACCCCGAGAATAGGGACGGT
GATGAGCACTGTCAACCACCTCGCCACGTTCTTCGCTGACAGCCTTCCGT
GCAAGATGGAACAGACCCTCGACATAGAGGAACATGCTGTTTTCAAGAGG
GCATGGGTCCTGTTCGAAGAGGCCATGCCAGACGTCAACTTGCACGCCTT
CACAGGTAAGACCGTCATTTAACGGCGGCAAACTAATGAAACTGTGGAAT
ATGTAAAATTGTTCTAGCCCTGCGATGGGTCAGTGCAATACGACGCGCAA
TATGTGTTATTCGGCCCGGCGAGGGAGGGTGGAGAGGGGGAGAGGATTAG
CGTCGAAGATGCGTCAATATCGGCACGACAACAGCACTCAAGTAGATGTT
CGGAGTAATACTTGCGAATCATTTGCGAGTGCCGCCCCCTTCCTCACGGG
TCGAACAGAATCCTCAGCCTGCACACACATAGCCGTTGCTGATGTGCAGT
TCGAACATGGGTGTCGTACGCAATGAAATGGCGTGCCTACATTTGTCGCC
CATGCTAGCAACCCTAATGCGTACAACAATCGGCTGCACAGGCGTAGTGC
TCATTGCAGTCGTTCTTCAAGCACACGTCGAATTCAGGCATCAACATACC
GCGTTTTCTCTCACATTGCTGTACGCTCCGCCGCTCGTCCTCGCGGTCAT
CGTCGCGTACGTTCGATCTGCAACTCTTGCGTCCGAAAGAGAGAGGTTCG
GAAGAGCCTGGTGCGGACTTCAACTTTTTCACTTTGTGGTGACCTCGTTG
CGAGGGCTTGAAGCCATGGGAAACCAGCTCGCGGCTCATGTCATTGATAT
TTCGAACTTTTTAGCACGCCTATCGTCGGCGTGTTCTCAATTTCTGGCGG
CATTTGTGTCGCTGGCATTCGGGGTCTTCTAATCCCAACTCCCGCTGACC
TTTTTTTCCCGCTGGCACATCGGAGTTCAAGATACTTGCGTCTTCCCGTG
GTATTCAAACCTTCTGTCTTCTTTCGCGCCTCCGCCCCCGTCATGGCATT
TGTATCCAGACACGTACTCCAGGACATACCGCGCGGCCTACCACTCGTAT
TCCCCTCAGTTCCTATCGCTGCCCTATCGCCAACGTTTGTTGCCAGGATC
TCGACGCCAAGGCGGGTTGTCTGCAACGAGATCACGTACAAGTGACGTAC
GTGGTCCCGCATGGCGTCATGCCGGAGGGACTTCGATCGACGGCTATGTC
CGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig8988:5956..8360-

>mRNA_H-paniculata_contig8988.16838.1 ID=mRNA_H-paniculata_contig8988.16838.1|Name=mRNA_H-paniculata_contig8988.16838.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig8988:5956..8360- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCGAACAATGTGCTTGGGTGTGGGACAGCGCGACGGATTGCGTCCAA
TGATAGGAATGCACCCGACTTATCTACACCTCATGCCCCCATCTCCAACT
TGCCCAGAAAAACGACGGCCCCACATCCCCACATTTTGCCCTGGTTCGCC
ATGCAACCAGCGCGCGGAAGAGGAAGCCCGTGTGGACGACCCCCAGCGCG
TCGCAGACGCCGTCGACGACTTTGCCGTCAGCTATCGGCCGGAGCACCTC
AGGCATACCGTGGCGTTAAGCTTCTTGGCTCCTTTGGCGTGACGGATTCG
AACAATGTGCTTGGGTGTGGGACAGCGCGACGGATTGCGTCCAATGATAG
GAATGCACCCGACTTATCTACACCTCATGCCCCCATCTCCAACTTGCCCA
GAAAAACGACGGCCCCACATCCCCACATTTTGCCCTGGTTCGCCATGCAA
CCAGCGCGCGGAAGAGGAAGCCCGTGTGGACGACCCCCAGCGCGTCGCAG
ACGCCGTCGACGACTTTGCCGTCAGCTATCGGCCGGAGCACCTCAGGCAT
ACCGTGGCGTTAAGCTTCTTGGCTCCTTTGGCGTGACGTTTCTCGACCCG
GATCAACTGGCCAAGCTCGTAGCCGCCTTGGATCCGAAGACCCCGAGAAT
AGGGACGGTGATGAGCACTGTCAACCACCTCGCCACGTTCTTCGCTGACA
GCCTTCCGTGCAAGATGGAACAGACCCTCGACATAGAGGAACATGCTGTT
TTCAAGAGGGCATGGGTCCTGTTCGAAGAGGCCATGCCAGACGTCAACTT
GCACGCCTTCACAGTTTCTCGACCCGGATCAACTGGCCAAGCTCGTAGCC
GCCTTGGATCCGAAGACCCCGAGAATAGGGACGGTGATGAGCACTGTCAA
CCACCTCGCCACGTTCTTCGCTGACAGCCTTCCGTGCAAGATGGAACAGA
CCCTCGACATAGAGGAACATGCTGTTTTCAAGAGGGCATGGGTCCTGTTC
GAAGAGGCCATGCCAGACGTCAACTTGCACGCCTTCACAGGATCTCGACG
CCAAGGCGGGTTGTCTGCAACGAGATCACGTACAAGTGACGTACGTGGTC
CCGCATGGCGTCATGCCGGAGGGACTTCGATCGACGGCTATGTCCGCGAT
CTCGACGCCAAGGCGGGTTGTCTGCAACGAGATCACGTACAAGTGACGTA
CGTGGTCCCGCATGGCGTCATGCCGGAGGGACTTCGATCGACGGCTATGT
CCGC
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