prot_H-paniculata_contig8955.16819.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8955.16819.1
Unique Name	prot_H-paniculata_contig8955.16819.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	532

Homology

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: D7G5I7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I7_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 8.960e-78
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRK 131
            MAAGGDP+QLPKDHVQDDFED    VYQELSKFGEISEMNVCDNLGDHLIGNVYVKF+DEEDAD+ALKGLMGRWYA RPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLE++LRK
Sbjct:  119 MAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYASRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLEKLLRK 249

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A835YWK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK2_9STRA)

HSP 1 Score: 209 bits (533), Expect = 2.940e-61
Identity = 92/131 (70.23%), Postives = 111/131 (84.73%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRK 131
            +AAGGDP  + +D   D+FEDF+EEVY+EL KFG + EM+VCDNLGDHL+GNVY+KF DEEDADAALKGL GRWY GRP++ EFSPV DFREARCRQ+DEGTC RGGQCNFMHV+ V + V+ YL+++ RK
Sbjct:   80 LAAGGDPNAIDQDAANDEFEDFYEEVYEELCKFGSVEEMHVCDNLGDHLVGNVYIKFSDEEDADAALKGLFGRWYGGRPMVPEFSPVNDFREARCRQYDEGTCGRGGQCNFMHVRHVSKDVVRYLDKVARK 210

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A835ZC00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC00_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.340e-59
Identity = 94/138 (68.12%), Postives = 113/138 (81.88%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKDGDTG 138
            +AAGG+P  + ++   D+FEDF+EEVY+EL KFG + EMNVCDNLGDHL+GNVYVKF DEEDAD ALKGL GRWYAGRP++ EFSPVTDFREARCRQ+DEGTC RGGQCNFMHV+ V R V  Y +++ R+ + G  G
Sbjct:  121 IAAGGNPETIDQEATNDEFEDFYEEVYEELCKFGTVEEMNVCDNLGDHLVGNVYVKFSDEEDADNALKGLFGRWYAGRPMVPEFSPVTDFREARCRQYDEGTCGRGGQCNFMHVRHVSRDVARYCDKMARRARRGGAG 258

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: H3G5Y3_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G5Y3_PHYRM)

HSP 1 Score: 200 bits (508), Expect = 1.110e-57
Identity = 87/129 (67.44%), Postives = 107/129 (82.95%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERIL 129
            +A  GDPA L + HV ++FEDF+EE+++EL KFG++ E+N+CDNLGDHL+GNVY KF DEE A AA K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR +   LE++ 
Sbjct:   59 IAQNGDPASLDQRHVDEEFEDFYEEIFEELCKFGKLEELNICDNLGDHLVGNVYAKFDDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPRAMQRELEKMF 187

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A7S3XMX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMX4_HETAK)

HSP 1 Score: 200 bits (508), Expect = 2.870e-57
Identity = 91/134 (67.91%), Postives = 108/134 (80.60%), Query Frame = 0

Query:    2 AAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKDG 135
            AAGGDP  +     Q+DFE+F+EEV++ELSKFG + E+N+CDNLGDHL+GNVY K+ DEEDAD+ALK L GR+YAGRP++CEFSPVTDFREARCRQFDEGTC RGG CNFMHVK VPR +   L R    K+ G
Sbjct:   83 AAGGDPNSIDHRQAQEDFEEFYEEVFEELSKFGAVEELNICDNLGDHLVGNVYAKYADEEDADSALKALYGRFYAGRPLICEFSPVTDFREARCRQFDEGTCARGGYCNFMHVKAVPRGLQRDLLRKFAPKRGG 216

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: T0S0M7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S0M7_SAPDV)

HSP 1 Score: 201 bits (511), Expect = 5.030e-57
Identity = 94/134 (70.15%), Postives = 108/134 (80.60%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKD 134
            +AA GDP+QL +  V +DFEDFFEEVY+EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A AA K L GR+Y GRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K V   +M  LER    KKD
Sbjct:  111 IAANGDPSQLDQKTVDEDFEDFFEEVYEELCKFGKVDELNVCDNLGDHLVGNVYAKFDDEECAAAAQKALYGRFYGGRPLICEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSHAMMIELERHYNIKKD 244

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A484E7J8_BRELC (C3H1-type domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7J8_BRELC)

HSP 1 Score: 195 bits (496), Expect = 1.470e-55
Identity = 85/129 (65.89%), Postives = 105/129 (81.40%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERIL 129
            +A  GDP  L +  V ++FEDF+EE+++EL KFG++ E+N+CDNLGDHL+GNVY K+ DEE A AA K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR +   LER+ 
Sbjct:   10 IAQNGDPTSLDQRQVDEEFEDFYEEIFEELCKFGKLEELNICDNLGDHLVGNVYAKYEDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPRSMQRELERMF 138

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A024TD10_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD10_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.990e-55
Identity = 91/127 (71.65%), Postives = 104/127 (81.89%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLER 127
            +AA GDP QL +  V +DFEDFFEEV++EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A AA   L GR+Y GRPIMCE+SPVTDFREARCRQFDEGTCNRGG CNFMH+K V R +M  LER
Sbjct:   96 IAANGDPNQLDQKTVDEDFEDFFEEVFEELCKFGKLEELNVCDNLGDHLVGNVYAKFEDEECAAAAHTALYGRFYGGRPIMCEYSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSRAMMIELER 222

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A1W0A787_9STRA (Splicing factor U2AF 35 kDa subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1W0A787_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.420e-55
Identity = 89/127 (70.08%), Postives = 105/127 (82.68%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLER 127
            +AA GDP+QL +  V +DFEDFFEEV++EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A AA K L GR+Y GRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K V   +M  L+R
Sbjct:  108 IAANGDPSQLDQKSVDEDFEDFFEEVFEELCKFGKLEELNVCDNLGDHLVGNVYAKFEDEECAAAAQKALYGRFYGGRPLICEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSNAMMRELQR 234

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: F0W2M2_9STRA (Splicing factor U2AF 35 kDa subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0W2M2_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.070e-54
Identity = 89/133 (66.92%), Postives = 108/133 (81.20%), Query Frame = 0

Query:    1 MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKK 133
            +A  GDP+ L +  V +DFEDF+EEV++EL KFG++ E+N+CDNLGDHL+GNVYVK+ DEE A AA K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMHVK V R +   LER+  + K
Sbjct:  109 IAQNGDPSGLDQKKVDEDFEDFYEEVFEELCKFGKVEELNICDNLGDHLVGNVYVKYEDEEHAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHVKTVSRSMQRELERLYNRYK 241

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5I7_ECTSI	8.960e-78	92.37	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YWK2_9STRA	2.940e-61	70.23	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835ZC00_9STRA	2.340e-59	68.12	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
H3G5Y3_PHYRM	1.110e-57	67.44	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]
A0A7S3XMX4_HETAK	2.870e-57	67.91	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
T0S0M7_SAPDV	5.030e-57	70.15	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
A0A484E7J8_BRELC	1.470e-55	65.89	C3H1-type domain-containing protein n=1 Tax=Bremia...	[more]
A0A024TD10_9STRA	1.990e-55	71.65	Uncharacterized protein n=7 Tax=Aphanomyces TaxID=...	[more]
A0A1W0A787_9STRA	2.420e-55	70.08	Splicing factor U2AF 35 kDa subunit n=2 Tax=Saprol...	[more]
F0W2M2_9STRA	1.070e-54	66.92	Splicing factor U2AF 35 kDa subunit putative n=2 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 359..386
None	No IPR available	PANTHER	PTHR12620:SF35	SPLICING FACTOR U2AF SMALL SUBUNIT B	coord: 11..213
IPR009145	U2 auxiliary factor small subunit	PRINTS	PR01848	U2AUXFACTOR	coord: 16..31 score: 44.89 coord: 44..66 score: 62.25 coord: 106..118 score: 61.19 coord: 71..95 score: 62.36
IPR009145	U2 auxiliary factor small subunit	PANTHER	PTHR12620	U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT	coord: 11..213
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 89..115 e-value: 3.5E-5 score: 33.2
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 91..115 e-value: 1.1E-6 score: 28.4
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 89..116 score: 14.202
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 8..83 e-value: 1.0E-8 score: 44.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 24..80 e-value: 1.0E-5 score: 25.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 10..87 score: 11.298
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..86 e-value: 7.6E-26 score: 92.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 18..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8955	contig	H-paniculata_contig8955:2398..8579 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8955.16819.1	mRNA_H-paniculata_contig8955.16819.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8955 1861..8714 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8955.16819.1 ID=prot_H-paniculata_contig8955.16819.1|Name=mRNA_H-paniculata_contig8955.16819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=532bp
MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLI
GNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDE
GTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKDGDTGDDEGERRSSKKR
SRSRSRDKERDRKKRSRSRERRRRSRSRDRGDRKHRDRDRDRDRDRERSG
RDKDRDRDRDEKKSRGDRDDRDEKKEKDRKRRHYTEAPESDKPDEKKDKK
EDEKSGSPAAEGDEPSATKDDRKNPVSEEESAADVAGASSAPTEVESGDA
ATNGKERVEKHADGGVVVDGTDDAVEASPEGDNSKDAGWEGDEQANGIGE
TEEGAEGVSPAAMEEADDANDENKEEEEDSNGEKKANGNGTTEPVDAPVE
AVTADGDPAEGNGSPEDEPEAIEAKGNPEVVSEEVAQNGGEGAEEGDGGE
DDDAIEPEENPEAAEEAESSARASRSARSSGRSTRASTRSTRSTRSTRSS
RSAAAVAEEGENDIEAMEEAADPMDEDEEDE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR009145	U2AF_small
IPR000571	Znf_CCCH
IPR003954	RRM_dom_euk
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf