mRNA_H-paniculata_contig8955.16819.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig8955.16819.1
Unique Name	mRNA_H-paniculata_contig8955.16819.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: D7G5I7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I7_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 1.110e-112
Identity = 165/176 (93.75%), Postives = 171/176 (97.16%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRK 528
            +VNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDP+QLPKDHVQDDFED    VYQELSKFGEISEMNVCDNLGDHLIGNVYVKF+DEEDAD+ALKGLMGRWYA RPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLE++LRK
Sbjct:   74 KVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQDDFEDXXXXVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYASRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLEKLLRK 249

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A835YWK2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK2_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.760e-92
Identity = 128/176 (72.73%), Postives = 154/176 (87.50%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRK 528
            +VNCPF+YKIGACRHGDRCSRQHHKPPFSQT+L+ ++YQNP SA++AAGGDP  + +D   D+FEDF+EEVY+EL KFG + EM+VCDNLGDHL+GNVY+KF DEEDADAALKGL GRWY GRP++ EFSPV DFREARCRQ+DEGTC RGGQCNFMHV+ V + V+ YL+++ RK
Sbjct:   35 KVNCPFYYKIGACRHGDRCSRQHHKPPFSQTLLLSHMYQNPASALLAAGGDPNAIDQDAANDEFEDFYEEVYEELCKFGSVEEMHVCDNLGDHLVGNVYIKFSDEEDADAALKGLFGRWYGGRPMVPEFSPVNDFREARCRQYDEGTCGRGGQCNFMHVRHVSKDVVRYLDKVARK 210

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A835ZC00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC00_9STRA)

HSP 1 Score: 295 bits (754), Expect = 3.870e-90
Identity = 130/183 (71.04%), Postives = 156/183 (85.25%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKDGDTG 549
            +VNCPF+YKIGACRHGDRCSRQHHKPPFSQTIL+ +++QNP SA++AAGG+P  + ++   D+FEDF+EEVY+EL KFG + EMNVCDNLGDHL+GNVYVKF DEEDAD ALKGL GRWYAGRP++ EFSPVTDFREARCRQ+DEGTC RGGQCNFMHV+ V R V  Y +++ R+ + G  G
Sbjct:   76 KVNCPFYYKIGACRHGDRCSRQHHKPPFSQTILLSHMFQNPASALIAAGGNPETIDQEATNDEFEDFYEEVYEELCKFGTVEEMNVCDNLGDHLVGNVYVKFSDEEDADNALKGLFGRWYAGRPMVPEFSPVTDFREARCRQYDEGTCGRGGQCNFMHVRHVSRDVARYCDKMARRARRGGAG 258

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A7S3XMX4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMX4_HETAK)

HSP 1 Score: 290 bits (741), Expect = 1.700e-89
Identity = 128/180 (71.11%), Postives = 152/180 (84.44%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKDG 540
            +VNCPF++KIGACRHGDRCSRQHHKPPFSQT+LVQ++YQNP SA+ AAGGDP  +     Q+DFE+F+EEV++ELSKFG + E+N+CDNLGDHL+GNVY K+ DEEDAD+ALK L GR+YAGRP++CEFSPVTDFREARCRQFDEGTC RGG CNFMHVK VPR +   L R    K+ G
Sbjct:   37 KVNCPFYFKIGACRHGDRCSRQHHKPPFSQTVLVQHMYQNPASAIAAAGGDPNSIDHRQAQEDFEEFYEEVFEELSKFGAVEELNICDNLGDHLVGNVYAKYADEEDADSALKALYGRFYAGRPLICEFSPVTDFREARCRQFDEGTCARGGYCNFMHVKAVPRGLQRDLLRKFAPKRGG 216

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A6H5L153_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L153_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 5.600e-87
Identity = 131/144 (90.97%), Postives = 135/144 (93.75%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFD 432
            +VNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDP+QLPKDHVQDDF         ELSKFGEISEMNVCDNLGDHLIGNVYVKF+DEEDAD+ALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFD
Sbjct:   29 KVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQDDFXXXXXXXXXELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFD 172

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: H3G5Y3_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3G5Y3_PHYRM)

HSP 1 Score: 278 bits (710), Expect = 2.280e-85
Identity = 120/174 (68.97%), Postives = 148/174 (85.06%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERIL 522
            +VNCPF++KIGACRHGDRCSR H+KP FSQTILV ++YQNP++ V+A  GDPA L + HV ++FEDF+EE+++EL KFG++ E+N+CDNLGDHL+GNVY KF DEE A AA K L GR+YAGRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K VPR +   LE++ 
Sbjct:   14 RVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPIAQVIAQNGDPASLDQRHVDEEFEDFYEEIFEELCKFGKLEELNICDNLGDHLVGNVYAKFDDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVPRAMQRELEKMF 187

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: T0S0M7_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0S0M7_SAPDV)

HSP 1 Score: 280 bits (715), Expect = 6.570e-85
Identity = 127/179 (70.95%), Postives = 150/179 (83.80%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKD 537
            +VNCPF++KIGACRHGDRCSR H+KP FSQTILV+++YQNP+S ++AA GDP+QL +  V +DFEDFFEEVY+EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A AA K L GR+Y GRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K V   +M  LER    KKD
Sbjct:   66 RVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVKHMYQNPLSVIIAANGDPSQLDQKTVDEDFEDFFEEVYEELCKFGKVDELNVCDNLGDHLVGNVYAKFDDEECAAAAQKALYGRFYGGRPLICEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSHAMMIELERHYNIKKD 244

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: F0Y2V2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2V2_AURAN)

HSP 1 Score: 276 bits (705), Expect = 6.960e-85
Identity = 118/172 (68.60%), Postives = 146/172 (84.88%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLER 516
            +VNCPF++KIGACRHGDRCSRQHHKPPFSQT++VQ++YQNP S + AAGGDP+QL    VQ++F+DF+EEVY EL+K+GEI E+NVC+NLGDH++GNVY KF DEE  DA+LK L GR+YAGRP++CEFSPVTDFREARCRQ+DE  C RGG CNFMH++   R +   LE+
Sbjct:   14 KVNCPFYFKIGACRHGDRCSRQHHKPPFSQTMIVQHMYQNPASQIAAAGGDPSQLDPKKVQEEFDDFYEEVYDELAKYGEIEELNVCENLGDHMVGNVYAKFADEEHTDASLKALFGRFYAGRPLVCEFSPVTDFREARCRQYDEAVCTRGGYCNFMHIRTPSRSLRRDLEK 185

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A024TD10_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TD10_9STRA)

HSP 1 Score: 275 bits (703), Expect = 1.730e-83
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLER 516
            +VNCPF++KIGACRHGDRCSR H+KP FSQT+LV+++YQNP+S V+AA GDP QL +  V +DFEDFFEEV++EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A AA   L GR+Y GRPIMCE+SPVTDFREARCRQFDEGTCNRGG CNFMH+K V R +M  LER
Sbjct:   51 RVNCPFYFKIGACRHGDRCSRSHNKPVFSQTLLVKHMYQNPLSTVIAANGDPNQLDQKTVDEDFEDFFEEVFEELCKFGKLEELNVCDNLGDHLVGNVYAKFEDEECAAAAHTALYGRFYGGRPIMCEYSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSRAMMIELER 222

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BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Match: A0A1W0A787_9STRA (Splicing factor U2AF 35 kDa subunit n=2 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1W0A787_9STRA)

HSP 1 Score: 275 bits (703), Expect = 3.130e-83
Identity = 122/172 (70.93%), Postives = 147/172 (85.47%), Query Frame = 1

Query:    1 QVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLER 516
            +VNCPF++KIGACRHGDRCSR H+KP FSQTILV+++YQNP+S ++AA GDP+QL +  V +DFEDFFEEV++EL KFG++ E+NVCDNLGDHL+GNVY KF DEE A AA K L GR+Y GRP++CEFSPVTDFREARCRQFDEGTCNRGG CNFMH+K V   +M  L+R
Sbjct:   63 RVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVKHMYQNPLSVIIAANGDPSQLDQKSVDEDFEDFFEEVFEELCKFGKLEELNVCDNLGDHLVGNVYAKFEDEECAAAAQKALYGRFYGGRPLICEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSNAMMRELQR 234

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8955.16819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G5I7_ECTSI	1.110e-112	93.75	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YWK2_9STRA	1.760e-92	72.73	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]
A0A835ZC00_9STRA	3.870e-90	71.04	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S3XMX4_HETAK	1.700e-89	71.11	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A6H5L153_9PHAE	5.600e-87	90.97	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
H3G5Y3_PHYRM	2.280e-85	68.97	Uncharacterized protein n=2 Tax=Phytophthora TaxID...	[more]
T0S0M7_SAPDV	6.570e-85	70.95	Uncharacterized protein n=2 Tax=Saprolegnia TaxID=...	[more]
F0Y2V2_AURAN	6.960e-85	68.60	Uncharacterized protein (Fragment) n=1 Tax=Aureoco...	[more]
A0A024TD10_9STRA	1.730e-83	72.09	Uncharacterized protein n=7 Tax=Aphanomyces TaxID=...	[more]
A0A1W0A787_9STRA	3.130e-83	70.93	Splicing factor U2AF 35 kDa subunit n=2 Tax=Saprol...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8955	contig	H-paniculata_contig8955:1861..8714 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	261.5
Seed ortholog evalue	8.3e-67
Seed eggNOG ortholog	2880.D7G5I7
Preferred name	U2AF1
KEGG ko	ko:K12836
KEGG Pathway	ko03040,ko05131,map03040,map05131
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000243,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008187,GO:0008380,GO:0009314,GO:0009416,GO:0009628,GO:0009648,GO:0009791,GO:0009889,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010810,GO:0010811,GO:0015030,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0019904,GO:0022414,GO:0030155,GO:0030628,GO:0031123,GO:0031124,GO:0031323,GO:0031326,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0036002,GO:0042710,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0044010,GO:0044011,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044764,GO:0045184,GO:0045292,GO:0045785,GO:0046483,GO:0046907,GO:0048024,GO:0048518,GO:0048522,GO:0048573,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050733,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0070727,GO:0071004,GO:0071010,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0089701,GO:0090304,GO:0090605,GO:0090609,GO:0097159,GO:1900187,GO:1900189,GO:1900190,GO:1900192,GO:1901360,GO:1901363,GO:1902494,GO:1903311,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.	pre-mRNA 3'-splice site binding
EggNOG OGs	KOG2202@1,KOG2202@2759
Ec32 ortholog description	Nucleotide-binding alpha-beta plait domain
Ec32 ortholog	Ec-22_000800.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03041
Exons	8
Model size	2268
Cds size	1596
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8955.16819.1	prot_H-paniculata_contig8955.16819.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig8955 2398..8579 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931119.559248-UTR-H-paniculata_contig8955:1860..2397	1622931119.559248-UTR-H-paniculata_contig8955:1860..2397	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig8955 1861..2397 -
1691481599.038593-UTR-H-paniculata_contig8955:1860..2397	1691481599.038593-UTR-H-paniculata_contig8955:1860..2397	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig8955 1861..2397 -
1622931119.7018209-UTR-H-paniculata_contig8955:8579..8714	1622931119.7018209-UTR-H-paniculata_contig8955:8579..8714	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig8955 8580..8714 -
1691481599.1363847-UTR-H-paniculata_contig8955:8579..8714	1691481599.1363847-UTR-H-paniculata_contig8955:8579..8714	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig8955 8580..8714 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig8955:1861..8714-
coding sequence from alignment at H-paniculata_contig8955:1861..8714-

protein sequence of mRNA_H-paniculata_contig8955.16819.1

>prot_H-paniculata_contig8955.16819.1 ID=prot_H-paniculata_contig8955.16819.1|Name=mRNA_H-paniculata_contig8955.16819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=532bp
MAAGGDPAQLPKDHVQDDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLI
GNVYVKFMDEEDADAALKGLMGRWYAGRPIMCEFSPVTDFREARCRQFDE
GTCNRGGQCNFMHVKPVPRLVMSYLERILRKKKDGDTGDDEGERRSSKKR
SRSRSRDKERDRKKRSRSRERRRRSRSRDRGDRKHRDRDRDRDRDRERSG
RDKDRDRDRDEKKSRGDRDDRDEKKEKDRKRRHYTEAPESDKPDEKKDKK
EDEKSGSPAAEGDEPSATKDDRKNPVSEEESAADVAGASSAPTEVESGDA
ATNGKERVEKHADGGVVVDGTDDAVEASPEGDNSKDAGWEGDEQANGIGE
TEEGAEGVSPAAMEEADDANDENKEEEEDSNGEKKANGNGTTEPVDAPVE
AVTADGDPAEGNGSPEDEPEAIEAKGNPEVVSEEVAQNGGEGAEEGDGGE
DDDAIEPEENPEAAEEAESSARASRSARSSGRSTRASTRSTRSTRSTRSS
RSAAAVAEEGENDIEAMEEAADPMDEDEEDE*

mRNA from alignment at H-paniculata_contig8955:1861..8714-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig8955.16819.1 ID=mRNA_H-paniculata_contig8955.16819.1|Name=mRNA_H-paniculata_contig8955.16819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6854bp|location=Sequence derived from alignment at H-paniculata_contig8955:1861..8714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGAACTGCCCTTTCTTCTACAAGATCGGAGCCTGCCGACACGGCGA
CAGGTGCTCTCGACAGCACCACAAGCCGCCCTTCAGTCAGACCATCTTGG
TGCAAAACCTATACCAAAATCCGGTGTCCGCGGTCATGGCCGCCGGAGGA
GATCCAGCACAGTTGCCCAAGGACCACGTGCAAGATGACGTGAGTGTACA
CTTCATATCGTCATGAACTATTTAGGAACTTCTGGCTTCTGACCCACTAA
TCCCACTAATAAGCTACGGAGTGCATGTTTACTAATTAGTTCGCTGCCAC
GAAGAAACGGTGATTTATCCGTTCTCCCTCTGCATTGAATCCAAGATATA
AGACCGCAAAAGCCCCAAGAAGTTTTTCTTTTTGCATCTGAGAAACACCA
ATCAGTTGTCTAGAGCTAGTCAAGGCATTCTGTCGATGTGTTCGTTGTTA
TCCATTGTTCACCACTGGTCGTTGGCCAATGTACCTTTTTGGTCGCTGAG
AAGTCCGGTTCCCTGAGGGGTTTATGAACACGCCTAGGGCGATCGATGTG
CGTCGATTCGAAACTTTAAATTAATTTTTTCATTGAGGTAAATCTATGCG
AAGGAATCTTCGCTACACGGTAGAAACGCAGCGAGCTGCTGTGTGTGGAT
CATAATGTTTGATTAGATTTAGGGATACCAAAGGCTGCTAAACATCGACT
GCACCGGCGTAGCTGTAGCTTCGGTTGGAACATATAACCTTTTGAGGACA
GAATGGTATATTGAACTTGTAAATCAATGCTTGTATTTCCCGGCAGTTCG
AGGACTTCTTTGAGGAGGTTTACCAGGAGCTGAGCAAATTCGGAGAAATT
TCCGAGATGAACGTCTGTGACAACCTGGGCGATCATCTCATCGGCAACGT
GTATGTCAAGGCAAGTAACACTGATGCAACTTTCGTTTGTTAGTTTTGTG
TCCCTGTTGAGTTTTTATACACGTCGGTGACGGCGATATAACATTGTTAA
GATCTTGACTGTGTGTGTCATACTCTAGTGCCTTACTCTCGACCGAAGAC
TGCAGCTGATGAACATAGCTTTATCACTTCAATTACCATGCTTCCCTTTT
TTTTTCTTTTTTTTTCACTGCAAGAGTTCCTCGATGATGACACTGGCGAT
ATTGTTTTTTCTTAATTTGGATTGAAAGCAGTTCATGGATGAAGAAGACG
CGGACGCAGCGCTGAAGGGGCTGATGGGCAGGTGGTACGCTGGTCGCCCA
ATCATGTGTGAGTTCAGTCCCGTGACAGACTTTCGGGAGGCTCGCTGCCG
CCAGTTCGATGAGGGCACGTGCAACAGGTACACAGAGTAATTTAGAAAAT
ATTGAAGGATAACACTTGATGGTACAGAGAAAATAAGAACGAAGTGCCGT
TGTGGATAATAACGTACACACGTGGTATTCCGGTGGCAGTAGAAAGTCAC
TCTTTTTATTCGTGGAATGTATGAATTTTCCCACAATTTTGAAAACAATT
CTTCGTGAGAGACCAGGCACAGATGAATACTTTGGTGTCACTTCATCACT
GATCGAAACTGGATAATGACTTACCTCGTCAAGAGGTCACGGCCCAAATC
AGAATAAAATGCTATTATTGATAATAGCTTTCGCAATGGGAGAATAGGGT
GATAAATGTGGAGAGTGCTCCTAACGACGACTGATGATGTCCTTGCAGCT
ACAAAAGCTTTTTCTCTCGCTCCTGTGTTTGACCATGTAAACCCGTGGTG
TAAAGTCATCATCCATCCTTCGGCTTTGTTTGTTGTTTTTTTAGCACGCC
CATCCCACCTTTTTGTTGCCGCGTTTGCCTGTTCAGGGGGGGGCAGTGCA
ACTTCATGCACGTGAAGCCAGTTCCTCGCTTGGTCATGTCCTACCTCGAG
AGGGTGAGTGGGGAATATCTTCAATTTTTGTCCTCGTAAAGATTCCGATG
TCGATTTTTCGTTTATTTTCATGTGATGTGTTACGTTATCAACCCATTCA
TGGCTTTAAAGTTACGTATTTCTTTTTTAAAAGGTGCTTCCGAACACCAA
ATATTTCCGACGAAACACGAATGTCGAGAAAACGCTACTGCAGTCGTTGT
GGGCAAAGTCATGCTAACTGCCTATGTGTGCTGGCTGAGCTGTGTCTGCT
GTGTTGCAAACAGCCAAGTTGTCAAGTATGGAAGATATTACGAAACGTTT
GTCCGACTGGAATAACGCCTACCTCTCTTTCAACGCGCCAAAAACGTCCA
CTTCTGCCCCCCGCCGCACACAGAGCAGTGAACCCAAAATATAGATCTAT
CTGTATATCTGAACCGCGGTGGCTCCCTATACAGATATAGATTATTGTTT
TTGCTTGATCCCTGTAATCATGTGATGAGCGTCGTTTTCCCCTATTTCGG
AGGTAGGAAGTAAACGTGGTTTCGTGGAAACCGGTGCTTCAGGGATTGAG
AACATGTTTGCTTCTTGCACATGGTAGTTGGTGCTGTCTGTCGCCAAGGT
CGAAGAAAGAGGACGCGGGCAAGAGAGTGCCCGCCGCAAATGGTCCGTGC
TGTGGCAGGCCACGGGACAGTTCAGTTTGGGCATAGTTGCTACGTCGGTT
GACATTGGGCCTTTGGCTGTGACACAGGTTGGGGTCTTGCCTACTGGGGC
AATCTAGAGCCACGGATATACCCCTGTAGTCCTCGCGGCTGTCCTCGACC
TATACACAACGTCTCGGCTGCCCTTATAGAGTGGCTCGTCGAGTTCGCAA
GAATAACAGATGTCTGTTACAGTGGTTTTTAGAAATTGGCTTGAGTGCAG
GTGTAAATCAGTGTTCCTGAGTGACGATAACGGATCAGATAAGCACCTCG
CTGGAAAACAAGGAGGGGTGTTCGTGAGTACACACGGTGTCTGTAAAGAT
TCCACACCTAGGGTGACGGAGTGGTAAAGGCTCAGCTATACCTTCATGCC
CGAATTGGATTCCTTTCTTAACTGACGTCAAGCCTTCCATCGGTTTTCCG
GGTTTCGTAGTTAGCCGACCTTGAAACCCTAGTTGAAGTCTCGGTTTCAT
GGTCAGCTGCTCTTCGAACCTTCATAACATTTTCTGCTTTCGTAAGTAGC
CGACCTCGAAACCGATGTAAGCATCTGTCCCTTCCAAAAAGGCGATAGTC
CACTTGTTATATTGTACATAAGAGATTAGTAGATTATCGTAACAAGGGCA
TTCAACGATGGATATTGATGAAAACAGACAAACAACGTGACTCTACTCGC
GCTCGAAGCTAAAGGTTGAGTGAAGCGTGGTTCAATTTTTAAGTTTTAGC
TCATTGTGCTTTTCTATTTTCGATGTTGGATTACACCACGTTGTCTTGCA
GATTCTTCGTAAGAAGAAGGATGGGGACACGGGGGACGACGAAGGGGAAC
GCAGGAGCAGCAAGAAGCGCTCTCGCTCGCGCAGCCGAGACAAGGAGAGA
GACAGGTAATTATGACGGATGACTTTATCTTCGGCTGGAAATTTCGGTGG
ATGACCTTCATTTACAAGTTCTACAGAATCATATGTTAGCTCTTGTGTTG
GTTTATCACGTAGGAAAATGCTTGTGATCACGTGTCGAATTGAACAGACG
GATATTATAATAATCACGAGAGTTGACGTGCGCGATTCGTGTAGGTCTTG
CAAAACTTCGTGTGGCTGTATTGTGTTTGATGGAAGGTGTCATTTACATG
TATCTGATACACACATGTAGCTCTATATGATGATGGCCGTTCTTGCTTGA
CCTGGTTGAAGTTCCCTGCTCATGTGTTTCCCGGTTCTTGTTTGTAATTA
TAATTGCGTTGAGGAAGGTCTTTATCGTCTCTTGACCCTAGCACTTAGCC
GAAACTACTGATTTCGGGCAAAGCATATACTAAAAAGTATTGCTTCGTCT
AAATAACGCAGTAACCCAAAACCTAATTATTCGATCGTATCTCGTTTTCT
GTCATGTTTCACAGCCATTTACCAAATTTGAGCACTTGCTTACTCGGTAT
TCATCTACTCGGTAATTGCTATATCTTGAATCGCGCATATTTCCATCACA
CCTTCATGTTGCATTGCGATTCCCCAAATTCTCCCTATTTGTTCTCTCGC
TAAGTTTTATCCTTGACTCCAATATATTTTCGTTACTGACACAAGTTTTT
CATGCTGCGCGCCAAAATGCAGGAAGAAGCGAAGCAGGTCTCGCGAGAGG
CGCAGGAGAAGCCGCAGTCGGGACCGAGGGGACCGCAAGCACCGTGACAG
GGACAGAGACAGGGACAGGGACAGGTGCTCCCCTTTTCTGATTCCCCTGC
CCAACAACAAGTTCTCTCCTCGTATATATGTTCAATTCAGATGACAATAA
GTGATATGTCAAAGCAGCATCATGTACTTATTGCGGGTGTCCTCTCGTCA
TATTTGTTCGCAGTTTGCTAATTCCCGTCGATCATATCTCCGGACCCAGA
CTGTTGAGTCATGCCCACATCTGGTAGTGTGTTCGGCAACTAATATCGTG
AAGCACTCGACAACTGGTACACGATGCGGCCACACAGGAGCGGTTACATC
CTGTAGGTACAGCGTATTGTGTCCTTCGTACACCAGAAGATGGACCTGCT
TCAATGCATGTCCCACAGGATCTATTAATGGTAGATTTCATATTGTTTGT
CATCATTCCGAAAAAGGAATTTCTCTGCCGGTTCGAAACAAGATACCATG
AAAACCAGGGGCACATGTATGCTACTCCAACTATCATATTGGTTTAGTAA
ATTTCGAGGGTAGCTCGCCTCCAAAAGCAGCCTGCTGCTAACATACTCTC
GGCCGTGAGAGGGCGGTCCGCCAGATTTTCTCGTTTTTTACTGACTTCGC
AGTTTGTACTGGATTTGATTACTGTTGATAGGGAGAGGAGCGGGAGGGAC
AAGGATCGCGACCGTGACAGGGATGAGAAGAAAAGCAGGGGCGACAGAGA
CGACAGGGACGAGAAGAAGGAAAAGTAAGAATTCTTATTCAAACATGTTC
ATCGCCTGCAATGCTGGAGACTGTCCATCATCTTGGTAATGGTTGATTGC
TCACTCTCTACATCTGATTTTTCGTGAGTTCGTGCTTTTCTTTCATTGGT
GGGCCAAAATAATGCAAGAGTTGTAAACTGCTTTTCAAATTGTTGGAGAG
TCTAAAGCTTCTAAATGAAAAGTTGAAACAATAAAATAACTTGTTGAAGA
AGCATTTCCGACGTGATATCCCTTATTGCTGAACTGCTAGCGGAGTGATT
GTCGACGAAATGATCAATTACGGAGAGTCGGCAATACCGCGCATGCGCTC
TTGTAAGAGAAGCTCGCTGACAGCGCGAAATTCCACCAGCTTTCGGTTTA
GTGCTGAATCGCTCATCCGCTGTCCGTCTGTGAATGTTCGATTCCATGCA
GGGACCGCAAGCGCCGTCACTACACCGAGGCACCAGAAAGCGACAAGCCG
GACGAAAAGAAGGACAAGAAGGAAGACGAGAAGTCCGGGAGCCCCGCTGC
TGAGGGCGACGAACCTTCGGCTACTAAAGACGACAGAAAAAACCCGGTAT
CTGAGGAAGAAAGCGCTGCTGACGTCGCCGGTGCTTCATCAGCGCCCACA
GAAGTCGAAAGTGGCGATGCCGCTACTAATGGTAAAGAGAGGGTCGAAAA
GCACGCGGATGGGGGCGTAGTTGTTGACGGCACGGACGATGCAGTCGAGG
CTTCACCGGAAGGAGACAACAGCAAGGACGCAGGATGGGAAGGCGATGAG
CAGGCTAATGGCATCGGGGAGACCGAGGAAGGCGCCGAAGGAGTTTCTCC
AGCGGCGATGGAAGAAGCCGACGACGCCAATGACGAAAATAAGGAGGAGG
AAGAAGACAGCAACGGAGAAAAAAAGGCTAACGGTAACGGCACGACGGAG
CCGGTCGATGCACCCGTTGAAGCTGTTACAGCAGACGGGGACCCTGCTGA
AGGAAATGGCTCACCAGAGGATGAACCGGAAGCCATAGAAGCCAAAGGAA
ATCCAGAAGTTGTTAGCGAAGAGGTTGCCCAAAATGGTGGAGAGGGCGCA
GAGGAGGGCGACGGTGGAGAAGACGACGACGCCATCGAGCCCGAGGAAAA
CCCGGAAGCGGCCGAGGAAGCGGAGAGTAGCGCCCGGGCTTCTCGATCGG
CCAGATCCTCTGGTCGGTCCACCAGAGCATCCACTCGTTCGACGAGGTCA
ACGAGGTCGACGAGGTCGAGTAGGTCGGCGGCGGCGGTGGCGGAGGAGGG
TGAAAATGATATTGAGGCGATGGAGGAAGCGGCCGATCCAATGGATGAAG
ACGAAGAGGACGAGTGAAGCGAGCCCTCCACAACTCACCGCCATCCGATT
TTTCACGTGAAAATTTCGTTGGGTTAGCGTCACTCTATAGACAGTGTGCG
TTTCTGCAAACCTCTGATGACTGCTGGTGTCACCTTTATCTCATCGGATC
GACCTCACAAGGAATAGTGTCCGCATGAAGTGTGAGTCGTCCAACTGTGC
GATTCTGAATGCCAGGGAGTAAGTCGTTGAAGTCCAGTGGCAGCAGGCTA
ACCTCTTCGTGGCACACATCCCGTCTCTTGTATTCTGCAGAAAAGGCATT
GTGAGGACTGGGACCCCAAATCGGCTGTTTATTCCACCTACAGTGGAGCA
CGACCTTAGCGACAGAACCCGCGAACTTGGGAAGCCGTCAAAGATGGCGG
AGGGTTTCCGCGCGCTGTCCATGGCAAACAAGCGATGCGCGAAATCAATT
GTTTCACATGTCAGTACTCGCTTGTAGTTTGGGGATATGCCCGTTATGGG
GTCGTTTGTGAGAAGATGTAGGGCAGGGTCACCCAACTCACTGTCAGGTT
TTTT

Coding sequence (CDS) from alignment at H-paniculata_contig8955:1861..8714-

>mRNA_H-paniculata_contig8955.16819.1 ID=mRNA_H-paniculata_contig8955.16819.1|Name=mRNA_H-paniculata_contig8955.16819.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3192bp|location=Sequence derived from alignment at H-paniculata_contig8955:1861..8714- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGCCGGAGGAGATCCAGCACAGTTGCCCAAGGACCACGTGCAAGA
TGACATGGCCGCCGGAGGAGATCCAGCACAGTTGCCCAAGGACCACGTGC
AAGATGACTTCGAGGACTTCTTTGAGGAGGTTTACCAGGAGCTGAGCAAA
TTCGGAGAAATTTCCGAGATGAACGTCTGTGACAACCTGGGCGATCATCT
CATCGGCAACGTGTATGTCAAGTTCGAGGACTTCTTTGAGGAGGTTTACC
AGGAGCTGAGCAAATTCGGAGAAATTTCCGAGATGAACGTCTGTGACAAC
CTGGGCGATCATCTCATCGGCAACGTGTATGTCAAGTTCATGGATGAAGA
AGACGCGGACGCAGCGCTGAAGGGGCTGATGGGCAGGTGGTACGCTGGTC
GCCCAATCATGTGTGAGTTCAGTCCCGTGACAGACTTTCGGGAGGCTCGC
TGCCGCCAGTTCGATGAGGGCACGTGCAACAGTTCATGGATGAAGAAGAC
GCGGACGCAGCGCTGAAGGGGCTGATGGGCAGGTGGTACGCTGGTCGCCC
AATCATGTGTGAGTTCAGTCCCGTGACAGACTTTCGGGAGGCTCGCTGCC
GCCAGTTCGATGAGGGCACGTGCAACAGGGGGGGGCAGTGCAACTTCATG
CACGTGAAGCCAGTTCCTCGCTTGGTCATGTCCTACCTCGAGAGGGGGGG
GGCAGTGCAACTTCATGCACGTGAAGCCAGTTCCTCGCTTGGTCATGTCC
TACCTCGAGAGGATTCTTCGTAAGAAGAAGGATGGGGACACGGGGGACGA
CGAAGGGGAACGCAGGAGCAGCAAGAAGCGCTCTCGCTCGCGCAGCCGAG
ACAAGGAGAGAGACAGATTCTTCGTAAGAAGAAGGATGGGGACACGGGGG
ACGACGAAGGGGAACGCAGGAGCAGCAAGAAGCGCTCTCGCTCGCGCAGC
CGAGACAAGGAGAGAGACAGGAAGAAGCGAAGCAGGTCTCGCGAGAGGCG
CAGGAGAAGCCGCAGTCGGGACCGAGGGGACCGCAAGCACCGTGACAGGG
ACAGAGACAGGGACAGGGACAGGAAGAAGCGAAGCAGGTCTCGCGAGAGG
CGCAGGAGAAGCCGCAGTCGGGACCGAGGGGACCGCAAGCACCGTGACAG
GGACAGAGACAGGGACAGGGACAGGGAGAGGAGCGGGAGGGACAAGGATC
GCGACCGTGACAGGGATGAGAAGAAAAGCAGGGGCGACAGAGACGACAGG
GACGAGAAGAAGGAAAAGGAGAGGAGCGGGAGGGACAAGGATCGCGACCG
TGACAGGGATGAGAAGAAAAGCAGGGGCGACAGAGACGACAGGGACGAGA
AGAAGGAAAAGGACCGCAAGCGCCGTCACTACACCGAGGCACCAGAAAGC
GACAAGCCGGACGAAAAGAAGGACAAGAAGGAAGACGAGAAGTCCGGGAG
CCCCGCTGCTGAGGGCGACGAACCTTCGGCTACTAAAGACGACAGAAAAA
ACCCGGTATCTGAGGAAGAAAGCGCTGCTGACGTCGCCGGTGCTTCATCA
GCGCCCACAGAAGTCGAAAGTGGCGATGCCGCTACTAATGGTAAAGAGAG
GGTCGAAAAGCACGCGGATGGGGGCGTAGTTGTTGACGGCACGGACGATG
CAGTCGAGGCTTCACCGGAAGGAGACAACAGCAAGGACGCAGGATGGGAA
GGCGATGAGCAGGCTAATGGCATCGGGGAGACCGAGGAAGGCGCCGAAGG
AGTTTCTCCAGCGGCGATGGAAGAAGCCGACGACGCCAATGACGAAAATA
AGGAGGAGGAAGAAGACAGCAACGGAGAAAAAAAGGCTAACGGTAACGGC
ACGACGGAGCCGGTCGATGCACCCGTTGAAGCTGTTACAGCAGACGGGGA
CCCTGCTGAAGGAAATGGCTCACCAGAGGATGAACCGGAAGCCATAGAAG
CCAAAGGAAATCCAGAAGTTGTTAGCGAAGAGGTTGCCCAAAATGGTGGA
GAGGGCGCAGAGGAGGGCGACGGTGGAGAAGACGACGACGCCATCGAGCC
CGAGGAAAACCCGGAAGCGGCCGAGGAAGCGGAGAGTAGCGCCCGGGCTT
CTCGATCGGCCAGATCCTCTGGTCGGTCCACCAGAGCATCCACTCGTTCG
ACGAGGTCAACGAGGTCGACGAGGTCGAGTAGGTCGGCGGCGGCGGTGGC
GGAGGAGGGTGAAAATGATATTGAGGCGATGGAGGAAGCGGCCGATCCAA
TGGATGAAGACGAAGAGGACGAGTGAGGACCGCAAGCGCCGTCACTACAC
CGAGGCACCAGAAAGCGACAAGCCGGACGAAAAGAAGGACAAGAAGGAAG
ACGAGAAGTCCGGGAGCCCCGCTGCTGAGGGCGACGAACCTTCGGCTACT
AAAGACGACAGAAAAAACCCGGTATCTGAGGAAGAAAGCGCTGCTGACGT
CGCCGGTGCTTCATCAGCGCCCACAGAAGTCGAAAGTGGCGATGCCGCTA
CTAATGGTAAAGAGAGGGTCGAAAAGCACGCGGATGGGGGCGTAGTTGTT
GACGGCACGGACGATGCAGTCGAGGCTTCACCGGAAGGAGACAACAGCAA
GGACGCAGGATGGGAAGGCGATGAGCAGGCTAATGGCATCGGGGAGACCG
AGGAAGGCGCCGAAGGAGTTTCTCCAGCGGCGATGGAAGAAGCCGACGAC
GCCAATGACGAAAATAAGGAGGAGGAAGAAGACAGCAACGGAGAAAAAAA
GGCTAACGGTAACGGCACGACGGAGCCGGTCGATGCACCCGTTGAAGCTG
TTACAGCAGACGGGGACCCTGCTGAAGGAAATGGCTCACCAGAGGATGAA
CCGGAAGCCATAGAAGCCAAAGGAAATCCAGAAGTTGTTAGCGAAGAGGT
TGCCCAAAATGGTGGAGAGGGCGCAGAGGAGGGCGACGGTGGAGAAGACG
ACGACGCCATCGAGCCCGAGGAAAACCCGGAAGCGGCCGAGGAAGCGGAG
AGTAGCGCCCGGGCTTCTCGATCGGCCAGATCCTCTGGTCGGTCCACCAG
AGCATCCACTCGTTCGACGAGGTCAACGAGGTCGACGAGGTCGAGTAGGT
CGGCGGCGGCGGTGGCGGAGGAGGGTGAAAATGATATTGAGGCGATGGAG
GAAGCGGCCGATCCAATGGATGAAGACGAAGAGGACGAGTGA