mRNA_H-paniculata_contig8941.16811.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8941.16811.1
Unique NamemRNA_H-paniculata_contig8941.16811.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8941.16811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8941contigH-paniculata_contig8941:8750..8980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size216
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.4241078-UTR-H-paniculata_contig8941:8749..87641622931118.4241078-UTR-H-paniculata_contig8941:8749..8764Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8941 8750..8764 +
1691481598.4645965-UTR-H-paniculata_contig8941:8749..87641691481598.4645965-UTR-H-paniculata_contig8941:8749..8764Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8941 8750..8764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931118.437403-CDS-H-paniculata_contig8941:8764..89801622931118.437403-CDS-H-paniculata_contig8941:8764..8980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8941 8765..8980 +
1691481598.4729497-CDS-H-paniculata_contig8941:8764..89801691481598.4729497-CDS-H-paniculata_contig8941:8764..8980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8941 8765..8980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8941.16811.1prot_H-paniculata_contig8941.16811.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8941 8765..8980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8941.16811.1

>prot_H-paniculata_contig8941.16811.1 ID=prot_H-paniculata_contig8941.16811.1|Name=mRNA_H-paniculata_contig8941.16811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
MAVAFYKGNERKRTIAVELENTKDVDDKSHEFTSSGETTSYENFYLYSDE
TKTLCIEADDLGNSEWLSIKEV
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mRNA from alignment at H-paniculata_contig8941:8750..8980+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8941.16811.1 ID=mRNA_H-paniculata_contig8941.16811.1|Name=mRNA_H-paniculata_contig8941.16811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig8941:8750..8980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGACATCGTATACATGGCCGTGGCTTTCTACAAAGGCAACGAGCGCAA
GAGGACTATCGCCGTGGAGCTGGAGAACACCAAAGACGTCGACGATAAGA
GCCACGAATTCACCTCAAGCGGAGAGACTACCTCCTATGAAAACTTTTAC
CTATACAGCGACGAGACCAAGACGCTGTGCATCGAGGCCGACGACCTGGG
AAACTCGGAGTGGCTCAGCATCAAAGAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig8941:8750..8980+

>mRNA_H-paniculata_contig8941.16811.1 ID=mRNA_H-paniculata_contig8941.16811.1|Name=mRNA_H-paniculata_contig8941.16811.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig8941:8750..8980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGTGGCTTTCTACAAAGGCAACGAGCGCAAGAGGACTATCGCCGT
GGAGCTGGAGAACACCAAAGACGTCGACGATAAGAGCCACGAATTCACCT
CAAGCGGAGAGACTACCTCCTATGAAAACTTTTACCTATACAGCGACGAG
ACCAAGACGCTGTGCATCGAGGCCGACGACCTGGGAAACTCGGAGTGGCT
CAGCATCAAAGAGGTAATGGCCGTGGCTTTCTACAAAGGCAACGAGCGCA
AGAGGACTATCGCCGTGGAGCTGGAGAACACCAAAGACGTCGACGATAAG
AGCCACGAATTCACCTCAAGCGGAGAGACTACCTCCTATGAAAACTTTTA
CCTATACAGCGACGAGACCAAGACGCTGTGCATCGAGGCCGACGACCTGG
GAAACTCGGAGTGGCTCAGCATCAAAGAGGTA
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