prot_H-paniculata_contig8800.16713.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8800.16713.1
Unique Name	prot_H-paniculata_contig8800.16713.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	186

Homology

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BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 2.670e-64
Identity = 130/181 (71.82%), Postives = 139/181 (76.80%), Query Frame = 0

Query:    4 GNHIPHHASPAVAASXXXXXXXXAAGNGEILPATSLFVRKVDMTIDRDDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKLLVVEERHSPMMGRNSRGEHAGGRTGRTGXXXXXXXXXXXXXXXXXERRPPGGGRTGRASIGRGDRPESSGPKDGGYKSRARAEA 184
            G +IPHHASPAVAAS XXXX   AAGNGEI+PATSLFVRKVDMTIDRD+MI HFS YG+VTGISMNPTRGYAFIDYR NECV +ALSTKEHYVNRKLLVVEERHSPM+ RNSRGEH GGR G   XXXXXX    X      +RRP           GRG R    GPKDGGY++R RAEA
Sbjct:  413 GAYIPHHASPAVAASAXXXXEAAAAGNGEIMPATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSPMVQRNSRGEHGGGRGG---XXXXXXRVSSXRDGRDGDRRP----------TGRGGRDRPDGPKDGGYRARGRAEA 580

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BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.340e-16
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 0

Query:   16 AASXXXXXXXXAAGNGEILPA--TSLFVRKVDMTIDRDDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKLLVVEERHSP 109
            AA+        AAG  +  PA  T+LFVRK+DM +DR+D+I HFS +G V  +SMNP+RGYAF+D  +++ V  A+ T EH V RK L VE +  P
Sbjct:  296 AAAPAFVPTAAAAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEP 391

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BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.360e-16
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 0

Query:   27 AAGNGEILPA--TSLFVRKVDMTIDRDDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKLLVVEERHSP 109
            AAG  +  PA  T+LFVRK+DM +DR+D+I HFS +G V  +SMNP+RGYAF+D  +++ V  A+ T EH V RK L VE +  P
Sbjct:  426 AAGWRQRDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEP 510

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8800.16713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FJI2_ECTSI	2.670e-64	71.82	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FSS4_ECTSI	4.340e-16	47.92	Poly(A)-binding protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L5V4_9PHAE	4.360e-16	51.76	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..104 e-value: 5.9E-10 score: 49.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..92 e-value: 2.3E-8 score: 33.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..108 score: 11.315
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 35..110 e-value: 3.1E-12 score: 48.4
IPR039539	Ras GTPase-activating protein-binding protein	PANTHER	PTHR10693	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	coord: 11..161
None	No IPR available	PANTHER	PTHR10693:SF20	AT27578P	coord: 11..161
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 33..137

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8800	contig	H-paniculata_contig8800:3438..9099 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8800.16713.1	mRNA_H-paniculata_contig8800.16713.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8800 732..10062 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8800.16713.1 ID=prot_H-paniculata_contig8800.16713.1|Name=mRNA_H-paniculata_contig8800.16713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
MFGGNHIPHHASPAVAASAAAAREAAAAGNGEILPATSLFVRKVDMTIDR
DDMITHFSKYGDVTGISMNPTRGYAFIDYRNNECVALALSTKEHYVNRKL
LVVEERHSPMMGRNSRGEHAGGRTGRTGGRGRGSGGRDARDGERGERRPP
GGGRTGRASIGRGDRPESSGPKDGGYKSRARAEAV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR039539	Ras_GTPase_bind_prot
IPR035979	RBD_domain_sf