mRNA_H-paniculata_contig8723.16655.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: D7FHP4_ECTSI (AP-1 complex subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHP4_ECTSI) HSP 1 Score: 446 bits (1147), Expect = 1.250e-148 Identity = 225/256 (87.89%), Postives = 241/256 (94.14%), Query Frame = 1
Query: 10 QAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+AALCCIRILRHLPEHVEDF ERI VLK+RHHGVLV+GVQL+ +VVES+PK+YAP FASVAP+LV++LRNLLSVGYAPEHDVAGVSDPFLQV ILRLLR+LGQHAEGVTD MSDAL QVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGK VQ+D ASVQRHRSTIVDCLKDPD+SIRQRALELIHQLVNE+TVVSLTREMLNYLVVA+PEH+ LC KI AAER
Sbjct: 154 KAALCCIRILRHLPEHVEDFMERIMEVLKDRHHGVLVAGVQLITAVVESDPKEYAPAFASVAPSLVKMLRNLLSVGYAPEHDVAGVSDPFLQVHILRLLRLLGQHAEGVTDTMSDALAQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKVVQLDPASVQRHRSTIVDCLKDPDISIRQRALELIHQLVNESTVVSLTREMLNYLVVAMPEHKAQLCDKITAAAER 409
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A836CEJ3_9STRA (AP-1 complex subunit gamma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEJ3_9STRA) HSP 1 Score: 350 bits (899), Expect = 6.220e-112 Identity = 176/261 (67.43%), Postives = 217/261 (83.14%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQH--AEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AALC IRIL+ P+HVEDF ERI VLK+RHHGVL++GVQL+ S+V +PK YA +FA V P+LVRLL+NL+S GY+P+HDVAGV++PFLQV L+LLR+LG+H ++ + M+D L QVAS TETAKNAGNAILYECV TI+ + +E GL+VLA+NILGRFLLNRDNNIRYVALNTLG+ V+ D A+VQRHR+TIVDCLKDPDVSIRQRALELI+QLVNE V +LT E+LNYLVVA+PEH+ LC KI A ++
Sbjct: 151 LRKKAALCTIRILQKNPDHVEDFAERIVGVLKDRHHGVLLAGVQLMTSIVALDPKAYAGLFARVVPSLVRLLKNLVSTGYSPDHDVAGVTNPFLQVKTLKLLRVLGEHGGSDDAAEAMNDILAQVASTTETAKNAGNAILYECVNTIIGVQSEQGLQVLAINILGRFLLNRDNNIRYVALNTLGRVVERDMAAVQRHRTTIVDCLKDPDVSIRQRALELIYQLVNEGNVAALTSELLNYLVVALPEHKAGLCDKIMDAVQQ 411
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: K8YRB5_NANGC (AP-1 complex subunit gamma-1 (Fragment) n=3 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRB5_NANGC) HSP 1 Score: 321 bits (822), Expect = 1.050e-102 Identity = 162/258 (62.79%), Postives = 207/258 (80.23%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAE 774
+ +AAL IRI + +P+ VEDF ERI +LK+R HGVL++ V+L+ V++ +P + F+ + P+++RLLRNLL++GYAP+HD+AG++DPFLQV +L +L+ LG+ ++ M+D L QVA+NTETAKNAGNAILY+CVQTIM++++E GL+VL +NILGRFLLNRDNNIRYVALNTL K V DAASVQRHR+TIV+CLKDPDVSIRQRALELI QLVN V LTREMLNYLVVA+PEH+ LCSKI E
Sbjct: 157 LRKKAALATIRIFQKVPDLVEDFIERITSLLKDRSHGVLIAAVELMTEVMKMDPA-FTSAFSRLVPSVLRLLRNLLTMGYAPDHDIAGITDPFLQVKLLYMLQCLGRDNAEASEAMNDLLAQVATNTETAKNAGNAILYQCVQTIMSVESEAGLRVLGINILGRFLLNRDNNIRYVALNTLSKVVGRDAASVQRHRNTIVECLKDPDVSIRQRALELICQLVNPQNVQELTREMLNYLVVALPEHKASLCSKIMHVVE 413
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A397F0B5_9STRA (Adaptin_N domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F0B5_9STRA) HSP 1 Score: 313 bits (802), Expect = 3.320e-101 Identity = 157/259 (60.62%), Postives = 202/259 (77.99%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AAL CIR+ R +PE VEDF E I +L+ ++H VL++GVQL++ ++ + + F + PALVR LRNLLS Y PE+DV+G+ DPFLQV IL LR+LG+ E ++ M+D L QVA+NTET+KNAGNAILYECV TIM++ +E+GLKVLA+NILGRFLLNRDNNIRYVALNTL K + DA +VQRHR+TIVDCLKDPD+SIRQRALELI+ LVNE+ + +L REMLNYLVV+ + + LCS+IA A +R
Sbjct: 151 LRKKAALACIRVFRQVPELVEDFVEPILDLLRSKNHAVLLTGVQLIVDLLTIDRDVHGAYFKGIVPALVRELRNLLSNNYTPEYDVSGIVDPFLQVNILSCLRLLGRDNEDASEAMNDVLAQVATNTETSKNAGNAILYECVSTIMSIQSESGLKVLAINILGRFLLNRDNNIRYVALNTLSKVIAEDAPAVQRHRNTIVDCLKDPDLSIRQRALELIYALVNESNIQALAREMLNYLVVSPLDQKPALCSRIADAVDR 409
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A7S2WL96_9STRA (AP-1 complex subunit gamma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WL96_9STRA) HSP 1 Score: 323 bits (827), Expect = 6.110e-101 Identity = 161/259 (62.16%), Postives = 206/259 (79.54%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AAL +R+ + +PE +E+F ++I ++K+R HGVL++GVQL+I++VE P+Q F + P LVRLL+NLL++GY+PEHD+AG++DPFLQV +LRLL++LGQ E ++ M+D L QVA+NTETAKNAGNAILYECV+ IMT++ E+ L+VLAVNILGRFLLNRDNNIRYVALNTL K V D +VQRHR+TIVDCLKDPDVSIRQRALELIHQL N V+ LTRE LNYLVVA E + LCSKI ++
Sbjct: 167 IKKKAALVMVRVFKRVPEMIEEFADKIVSLMKDRTHGVLIAGVQLMITIVEVEPEQ-GQTFTRLVPHLVRLLKNLLTMGYSPEHDIAGITDPFLQVKLLRLLQLLGQGNEEASEAMNDILAQVATNTETAKNAGNAILYECVKAIMTIEAESALRVLAVNILGRFLLNRDNNIRYVALNTLSKVVGKDMDTVQRHRATIVDCLKDPDVSIRQRALELIHQLTNSKNVIDLTRETLNYLVVASTEQKVTLCSKIMDTVDK 424
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: W7TQP3_9STRA (AP-1 complex subunit gamma n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQP3_9STRA) HSP 1 Score: 321 bits (822), Expect = 2.010e-100 Identity = 162/258 (62.79%), Postives = 207/258 (80.23%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAE 774
+ +AAL IRI + +P+ VEDF ERI +LK+R HGVL++ V+L+ V++ +P + F+ + P+++RLLRNLL++GYAP+HD+AG++DPFLQV +L +L+ LG+ ++ M+D L QVA+NTETAKNAGNAILY+CVQTIM++++E GL+VL +NILGRFLLNRDNNIRYVALNTL K V DAASVQRHR+TIV+CLKDPDVSIRQRALELI QLVN V LTREMLNYLVVA+PEH+ LCSKI E
Sbjct: 151 LRKKAALATIRIFQKVPDLVEDFIERITSLLKDRSHGVLIAAVELMTEVMKMDPA-FTSAFSRLVPSVLRLLRNLLTMGYAPDHDIAGITDPFLQVKLLYMLQCLGRDNAEASEAMNDLLAQVATNTETAKNAGNAILYQCVQTIMSVESEAGLRVLGINILGRFLLNRDNNIRYVALNTLSKVVGRDAASVQRHRNTIVECLKDPDVSIRQRALELICQLVNPQNVQELTREMLNYLVVALPEHKASLCSKIMHVVE 407
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A6G0WMQ6_9STRA (AP-1 complex subunit gamma n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMQ6_9STRA) HSP 1 Score: 318 bits (814), Expect = 1.370e-99 Identity = 161/259 (62.16%), Postives = 203/259 (78.38%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AAL CIR+ R +PE VEDF E I+ +L+ ++H VL++GVQLVI ++ +P+ + F + LVR LRNLLS Y PE+DV+G+ DPFLQV IL LR+LGQ E ++ M+D L QVA+NTET+KNAGNAILYECV TIM++ +E+GLKVLA+NILGRFLLNRDNNIRYVALNTL K + DA +VQRHR+TIVDCLKDPD+SIRQRALELI+ LVNE+ + +L REMLNYLVV+ E + LCS+IA A ER
Sbjct: 151 LRKKAALACIRVFRQVPELVEDFVESIRDLLQSKNHAVLLTGVQLVIDLLLIDPEVHGGYFKGIVSVLVRELRNLLSNNYTPEYDVSGIVDPFLQVNILSCLRLLGQDNEEASEAMNDVLAQVATNTETSKNAGNAILYECVSTIMSIQSESGLKVLAINILGRFLLNRDNNIRYVALNTLSKVIAEDAPAVQRHRNTIVDCLKDPDLSIRQRALELIYALVNESNIQALAREMLNYLVVSPNEQKPALCSRIADAVER 409
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A0W8DUP5_PHYNI (AP-1 complex subunit gamma n=18 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DUP5_PHYNI) HSP 1 Score: 315 bits (808), Expect = 1.280e-98 Identity = 159/259 (61.39%), Postives = 207/259 (79.92%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AAL +R+ +P+ VEDFTE I +L+ +HHGVL++GVQL+ VV + + F+S+ P LV+LLRNLLS+GY+ E+DV+G++DPFLQV IL+LLR+LG+ +E ++ M+D L QVA+NTETAK AGNAILYECVQTIMT+++++GL+VLA+NILGRFLLNRDNNIRYVALNTL K V D A+VQRH +TIVDCLKDPD SIRQRALELI+ LVN + + +L REMLNYLV+A E + LCS+IA A +R
Sbjct: 151 LRKKAALAAVRVFTKVPDLVEDFTESILGLLRSKHHGVLLAGVQLITEVVLLDAENLKT-FSSLVPKLVKLLRNLLSMGYSSEYDVSGIADPFLQVAILKLLRLLGKDSEEASEAMNDVLAQVATNTETAKTAGNAILYECVQTIMTIESDSGLRVLAINILGRFLLNRDNNIRYVALNTLSKVVTDDIAAVQRHTNTIVDCLKDPDTSIRQRALELIYALVNSSNIQTLAREMLNYLVIAPNEQKPELCSRIADAVDR 408
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A1W0AAH1_9STRA (AP-1 complex subunit gamma n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAH1_9STRA) HSP 1 Score: 315 bits (806), Expect = 1.370e-98 Identity = 158/259 (61.00%), Postives = 202/259 (77.99%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AAL C+R+ R +PE VEDF + I +LK R+H VL++G+QL+I ++ + + + F S+ P LV+ LRNLLS Y PE+DV+G+ DPFLQV IL LR+LG+ + ++ M+D L QVA+NTET+KNAGNAILYECV TIM++ +E+GLKVLA+NILGRFLLNRDNNIRYVALNTL K + DA +VQRHR+TIVDCLKDPD SIRQRALELI+ LVNET + SL REMLNYLVV+ + + LCS+IA A ER
Sbjct: 151 LRKKAALACVRVFRQVPELVEDFIDPIHALLKSRNHAVLLTGIQLIIELLIIDHEGHIGYFNSIVPTLVKELRNLLSNNYTPEYDVSGIVDPFLQVNILSCLRLLGKDNDEASEAMNDVLAQVATNTETSKNAGNAILYECVSTIMSIQSESGLKVLAINILGRFLLNRDNNIRYVALNTLSKVIADDAPAVQRHRNTIVDCLKDPDASIRQRALELIYALVNETNIQSLAREMLNYLVVSPNDQKPALCSRIADAVER 409
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Match: A0A024TMH5_9STRA (AP-1 complex subunit gamma n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024TMH5_9STRA) HSP 1 Score: 315 bits (807), Expect = 1.470e-98 Identity = 160/259 (61.78%), Postives = 202/259 (77.99%), Query Frame = 1
Query: 1 MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVESNPKQYAPVFASVAPALVRLLRNLLSVGYAPEHDVAGVSDPFLQVGILRLLRILGQHAEGVTDQMSDALTQVASNTETAKNAGNAILYECVQTIMTLDTENGLKVLAVNILGRFLLNRDNNIRYVALNTLGKAVQIDAASVQRHRSTIVDCLKDPDVSIRQRALELIHQLVNETTVVSLTREMLNYLVVAIPEHRGPLCSKIAGAAER 777
+ +AAL CIR+ R +PE VEDF E I +L+ ++H VL++GVQL+I ++ + + F + PALVR LRNLLS Y PE+DV+G+ DPFLQV IL LR+LGQ E ++ M+D L QVA+NTET+KNAGNAILYECV TIM++ +E+GLKVLA+NILGRFLLNRDNNIRYVALNTL K + DA +VQRHR+TIVDCLKDPD+SIRQRALELI+ LVNE+ + +L REMLNYLVV+ + + LCS+IA A ER
Sbjct: 151 LRKKAALACIRVFRQVPELVEDFVEPILDLLRSKNHAVLLTGVQLIIDLLLIDRAVHGEYFKGIVPALVRELRNLLSNNYTPEYDVSGIVDPFLQVNILSCLRLLGQDNEEASEAMNDVLAQVATNTETSKNAGNAILYECVSTIMSIQSESGLKVLAINILGRFLLNRDNNIRYVALNTLSKVIADDAPAVQRHRNTIVDCLKDPDLSIRQRALELIYALVNESNIQALAREMLNYLVVSPIDQKPALCSRIADAVER 409 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8723.16655.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8723.16655.1 >prot_H-paniculata_contig8723.16655.1 ID=prot_H-paniculata_contig8723.16655.1|Name=mRNA_H-paniculata_contig8723.16655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp MNAQAALCCIRILRHLPEHVEDFTERIKMVLKERHHGVLVSGVQLVISVVback to top mRNA from alignment at H-paniculata_contig8723:520..8872- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8723.16655.1 ID=mRNA_H-paniculata_contig8723.16655.1|Name=mRNA_H-paniculata_contig8723.16655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8353bp|location=Sequence derived from alignment at H-paniculata_contig8723:520..8872- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8723:520..8872- >mRNA_H-paniculata_contig8723.16655.1 ID=mRNA_H-paniculata_contig8723.16655.1|Name=mRNA_H-paniculata_contig8723.16655.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig8723:520..8872- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |