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Homology
BLAST of mRNA_H-paniculata_contig871.16647.1 vs. uniprot
Match: A0A6H5LBA6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA6_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 2.270e-8 Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 3
Query: 1662 ESATREERRRKREAALLMRNECSFSGCRTRPSFGIEGDKRPTACSEHRSEGMVTVKYIKSR 1844
ES ERRR+ E L +EC SGC TRPS+G+EGDKRPTAC +H + GMV VK+ +SR
Sbjct: 511 ESLETAERRRQEELVLEDYDECCVSGCATRPSYGMEGDKRPTACVDHAAIGMVIVKHSRSR 571
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 3368 |
| Cds size | 2292 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig871.16647.1 >prot_H-paniculata_contig871.16647.1 ID=prot_H-paniculata_contig871.16647.1|Name=mRNA_H-paniculata_contig871.16647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=764bp
MGHRETKRRPLHLHIKRCILKTMPQLSFKGPYSSTRNPCNSKIYHIRSIR TRNHHHHLPTTHHHQAPPPQQQQQQQLLQQHSAPPQAQQQHHEMHHDQSA QTGQQQPQQQQSPLPALAAGYYSGGGSGGYDPTNCAGGAGLGAGGGAPSS APVVGTSAATLPLPLPAAPPIPGMGPNGMEGGAHGDMHGVNGAQAGHDGW MIGISQHDANGVGGVGGSRNLKARLGGSRQDGVAGGVVGDGNGIMQQQQQ QQQQQHHQHQQQLSGDGVEGGVGHHSDVLGMSVGVAEAAGANHGAPHHAI HGHGIPNHELLEMSMDGRAMGHSGSATGMGVSIQMAVGEMGVASVGMGTM DGMPELAESATREERRRKREAALLMRNECSFSGCRTRPSFGIEGDKRPTA CSEHRSEGMVTVKYIKSRSCDYDGCTTYPSYNVKGKRRARRCGKHRLDGM VDVKAPRCEHPGCPTLPYYGSEGEKKRRWCAVHKLPGMVDVKSRRCDFET CLTQPTYGIRGENRARRCAKHKDPGMVNIVHRHCEFEGCTTQPYYGVEGN RGGSHCAAHKLPGMVKTKGQRCNGPGCSTRPSYGNDGDRRPSYCGKHKAP NMVDVINRRCEEPGCVSQPTHAIEGTGLAVRCAVHSSKGMVNIKSRRCEL EGCSTQPYYGHEGAKRGTRCSKHKLQGMIDVHNRRCQHEGCQVSASFGVK EGGNGATHCAKHKMQGMAPLYRRKAVGGKLSSRAAAAAAAAAAAAVVAAT AASAPPPPTPPAM* back to topmRNA from alignment at H-paniculata_contig871:27156..31236- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig871.16647.1 ID=mRNA_H-paniculata_contig871.16647.1|Name=mRNA_H-paniculata_contig871.16647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4081bp|location=Sequence derived from alignment at H-paniculata_contig871:27156..31236- (Halopteris paniculata Hal_grac_a_UBK monoicous) CAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCA
GCAGCAGCAACAACAACAACAACAACAACAACAACAGCATTTACAGATGC
AGCATCAACTTTTGCAACATCAGCAACAGCAGCAGCATGGTCAAGAGCAA
GTCGAAGAAATTCGCGAGGCGGCTGCTCGCGAACTGGCAGCGATGAGAGG
AAATGCACCGGATTCAACGAGCCCGGCAACGATGTCCCCGACCGCGTCCG
CGGCCCCTTCTACCACGAGTATCGTAGATGACCGATTCAGCAACCACTCC
TACGTTAATGAGGCAGCGCCAGCCTCGGCGGATGACGTCGCGCCCATCGG
GTCCATCTTAACCAACGGCACCCTCGAGCTGCCAACTTCCTCGTCGCTTA
TTGAGGAAGGGAAAGAAGCATATACTGGTGCAGAAGCTGAAGGTGGCGAC
GGCGGCGGTGGCGGCTGGGCGGGGGCAAATGGCAGTGCTATCCCTGGAAT
TCATGCAGGTTATCAAGCACAAGTGTTCTCCGCAATGAGTCCTGGTTCGG
GGTCTCTTGCGCCTGGGGCTGGGCTGCAGGAGCATTGGTCGCAGTTACCC
CAACAGAGTCAGCACCCTGTTGAACAACACGAGCAGCACCAGCAGCAGCA
CCCTCAGCATCAACAGCAAATTCATCACGATCACGATGGGACATCGGGAA
ACCAAGCGCCGGCCGCTCCATCTCCACATCAAGCGCTGCATCCTCAAAAC
CATGCCACAACTCAGCTTCAAGGGTCCATACAGCTCCACGCGGAACCCAT
GCAACAGCAAGATCTATCACATTCGCAGCATTCGCACACGCAATCACCAC
CACCACCTTCCCACCACCACCACCACCACCACCACCACCACCACCACCAA
GCGCCGCCGCCTCAACAGCAACAACAGCAGCAACTGCTACAGCAACACTC
CGCGCCGCCACAAGCTCAGCAACAGCACCACGAAATGCATCACGACCAAT
CCGCTCAGACGGGGCAGCAGCAACCGCAGCAGCAACAGTCCCCATTGCCA
GCGCTCGCAGCGGGCTATTACTCCGGTGGAGGCAGCGGTGGGTACGATCC
AACCAATTGCGCGGGGGGCGCAGGGTTGGGAGCAGGGGGCGGCGCCCCGT
CCTCCGCGCCCGTCGTCGGTACAAGCGCGGCCACCCTTCCCCTCCCTCTA
CCCGCAGCGCCCCCCATTCCAGGCATGGGTCCTAACGGCATGGAAGGCGG
CGCCCACGGCGACATGCACGGGGTTAACGGCGCACAAGCGGGCCACGATG
GCTGGATGATCGGGATTTCCCAGCATGATGCGAACGGGGTCGGCGGAGTC
GGTGGTTCGCGGAACTTAAAGGCTAGGTTGGGCGGGTCCAGGCAGGACGG
CGTAGCAGGAGGGGTGGTAGGAGATGGGAATGGGATAATGCAGCAGCAGC
AGCAACAACAACAACAACAACACCACCAGCATCAGCAGCAACTAAGTGGA
GACGGGGTAGAGGGTGGAGTTGGTCATCACAGTGACGTTTTGGGGATGTC
TGTGGGCGTGGCGGAAGCAGCTGGGGCCAATCATGGCGCGCCGCACCATG
CTATCCACGGTCATGGTATACCGAATCACGAATTGCTGGAGATGAGTATG
GATGGGAGGGCAATGGGCCACAGCGGGAGCGCCACAGGCATGGGTGTGTC
GATACAGATGGCGGTGGGTGAGATGGGTGTAGCGTCGGTCGGGATGGGGA
CGATGGATGGGATGCCGGAGTTGGCAGAATCTGCCACGAGGGAAGAAAGG
CGTCGGAAGAGGTAAGTAATCACTTTTATGTTTTCATGTTATCTCGAGGA
GGGGGTTTCTACGAGCTTCCAATATTGCGGTACCTTGTGAAGGAATTCTC
AAGATTTAGGAGCTGGTATTGGCTACGGTAGCGGTTACTGGTGCAGGTGT
CGGTTTCCCTGGATGTGGTAGCATTGCAATAACTTGGCGCCCCATTTTCG
ACCTTTGCTCGATTACCCATGTGTCGTGATTTTTAGCTCCTTATATGTTA
ACGCTTCCCTGGAGTCTTCCCGGCTTTCAGAGCTTCGATAGATATTTCAC
GTGCAGTACAGCTATTGCACATGCCGGCACGATATTCGCCGTTTCGATTG
CATGTACGAATGACTACGCCGCTTAGCAGACTTGGAGAATGCATAGATTC
TTCTCCCCTCCCTTGATTTGTTGTGACTGTATGATCGATTACAGTGGCGA
TCGATTTCCCCCAGTGCGCCCCCCGGTTGAAATTTTATGATGTCAGATAT
AGTCACCTTGTCGTGCGTTCCCACGCAACCAAACGCTCTGCACGACATGA
CTTCATCAACCGTCACAAGCCGCCGCATTCCGTTACCCCCACGCGTTTTG
ATTATGTAGGGAAGCGGCCCTCTTGATGCGCAACGAATGTTCCTTTTCGG
GATGCAGGACCCGACCTTCGTTTGGCATCGAAGGAGACAAGCGACCGACA
GCTTGCTCGGAGCACCGCAGCGAGGGCATGGTGACGGTGAAATACATCAA
AAGCCGGAGCTGCGATTACGACGGTTGCACGACCTACCCGTCATACAACG
TCAAGGGGAAGCGACGAGCCCGGCGCTGTGGTAAACACCGCCTGGACGGC
ATGGTGGATGTGAAAGCTCCGCGCTGTGAACATCCGGGTTGTCCCACGCT
TCCGTACTACGGGTCGGAGGGGGAGAAGAAGCGACGGTGGTGCGCGGTGC
ACAAGCTACCCGGTATGGTGGACGTCAAGAGCCGGAGGTGCGATTTCGAG
ACATGTTTGACCCAGCCAACGTACGGGATCCGCGGGGAAAACAGAGCGCG
GCGTTGCGCCAAGCACAAAGACCCCGGGATGGTCAACATTGTTCACCGCC
ATTGTGAATTCGAGGGGTGCACAACACAGCCGTACTACGGCGTGGAGGGG
AATCGCGGGGGCAGTCACTGCGCGGCGCACAAGTTACCCGGGATGGTGAA
AACCAAGGGGCAGCGGTGTAACGGACCCGGGTGCTCTACTCGCCCCAGCT
ACGGGAACGACGGAGACAGGCGGCCGAGCTACTGTGGCAAGCACAAAGCA
CCCAACATGGTTGATGTAATCAACCGGCGATGCGAGGAGCCCGGGTGCGT
TTCTCAACCAACCCACGCGATCGAAGGGACCGGCCTAGCGGTCCGCTGTG
CTGTGCATTCGAGCAAGGGCATGGTGAACATCAAGTCTCGACGCTGCGAG
TTGGAAGGGTGCAGCACGCAGCCCTATTACGGGCACGAAGGGGCGAAGCG
TGGGACCCGGTGCTCCAAGCACAAGCTGCAGGGGATGATTGATGTCCACA
ACCGGCGGTGCCAGCACGAGGGGTGTCAGGTATCGGCGTCGTTCGGGGTG
AAGGAAGGGGGGAACGGAGCGACCCATTGTGCGAAGCACAAGATGCAAGG
CATGGCGCCGCTTTATCGCAGGAAGGCGGTTGGGGGCAAGCTCTCTTCGC
GTGCAGCAGCTGCCGCGGCGGCGGCTGCTGCTGCCGCCGTCGTAGCTGCA
ACTGCTGCGTCTGCCCCTCCTCCACCCACCCCTCCTGCGATGTGATGAGA
TACTTCATTTTCAATATAGTTGTGGTTTGCAAGGCTTCAAATTATTTGGC
AGAGTACAGAAACGAACGGTGGGGTGCTGACCCCGAGGAGAAGTGCAGTA
AAACTTTTTCATCAGAGCTTTGTGGGTCTTTTTGTGGTATTTTGAGGGAT
CAGTTGTGTAGTGCTTATTTTCTTTGGAGCGTGTAGTACACGGTTTGTGC
ATGGCTTTCTTGTGTGTTCGGTCGCTTCCGATTAGTAGCTGCCGCAGGGC
ATGCTGCGGGCAGCTTTGTTGTTTGGAGTCTCGAGGGCTCCGCCTCTCTC
CCCTTCCGTTGAAAAGTTTCACCGCCAATGGTTGTCTTCAACAACCCCAA
TATTATTATTCGTTTGTTTAGTGTATATCGACGTTTGTTGTGTGTTGATT
ACATTACATTACAGTAGTCGTTCAATCTTAACGTTGCTGCTACCCACTCA
TGAAGGATATCCTTGAAAAAAAGTGCTGCTA back to topCoding sequence (CDS) from alignment at H-paniculata_contig871:27156..31236- >mRNA_H-paniculata_contig871.16647.1 ID=mRNA_H-paniculata_contig871.16647.1|Name=mRNA_H-paniculata_contig871.16647.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4584bp|location=Sequence derived from alignment at H-paniculata_contig871:27156..31236- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGACATCGGGAAACCAAGCGCCGGCCGCTCCATCTCCACATCAAGCG CTGCATCCTCAAAACCATGCCACAACTCAGCTTCAAGGGTCCATACAGCT CCACGCGGAACCCATGCAACAGCAAGATCTATCACATTCGCAGCATTCGC ACACGCAATCACCACCACCACCTTCCCACCACCATGGGACATCGGGAAAC CAAGCGCCGGCCGCTCCATCTCCACATCAAGCGCTGCATCCTCAAAACCA TGCCACAACTCAGCTTCAAGGGTCCATACAGCTCCACGCGGAACCCATGC AACAGCAAGATCTATCACATTCGCAGCATTCGCACACGCAATCACCACCA CCACCTTCCCACCACCCACCACCACCAAGCGCCGCCGCCTCAACAGCAAC AACAGCAGCAACTGCTACAGCAACACTCCGCGCCGCCACAAGCTCAGCAA CAGCACCACGAAATGCATCACGACCAATCCGCTCAGACGGGGCAGCAGCA ACCGCAGCAGCAACAGTCCCCATTGCCAGCGCTCGCAGCGGGCTATTACT CCGGTGGAGGCAGCGGTGGGTACGATCCAACCAATTGCGCGGGGGGCGCA GGGTTGGGAGCAGGGGGCGGCGCCCCGTCCTCCGCGCCCGTCGTCGGTAC AAGCGCGGCCACCCTTCCCCTCCCTCTACCCGCAGCGCCCCCCATTCCAG GCATGGGTCCTAACGGCATGGAAGGCGGCGCCCACGGCGACATGCACGGG GTTAACGGCGCACAAGCGGGCCACGATGGCTGGATGATCGGGATTTCCCA GCATGATGCGAACGGGGTCGGCGGAGTCGGTGGTTCGCGGAACTTAAAGG CTAGGTTGGGCGGGTCCAGGCAGGACGGCGTAGCAGGAGGGGTGGTAGGA GATGGGAATGGGATAATGCAGCAGCAGCAGCAACAACAACAACAACAACA CCACCAGCATCAGCAGCAACTAAGTGGAGACGGGGTAGAGGGTGGAGTTG GTCATCACAGTGACGTTTTGGGGATGTCTGTGGGCGTGGCGGAAGCAGCT GGGGCCAATCATGGCGCGCCGCACCATGCTATCCACGGTCATGGTATACC GAATCACGAATTGCTGGAGATGAGTATGGATGGGAGGGCAATGGGCCACA GCGGGAGCGCCACAGGCATGGGTGTGTCGATACAGATGGCGGTGGGTGAG ATGGGTGTAGCGTCGGTCGGGATGGGGACGATGGATGGGATGCCGGAGTT GGCAGAATCTGCCACGAGGGAAGAAAGGCGTCGGAAGAGCACCACCACCA AGCGCCGCCGCCTCAACAGCAACAACAGCAGCAACTGCTACAGCAACACT CCGCGCCGCCACAAGCTCAGCAACAGCACCACGAAATGCATCACGACCAA TCCGCTCAGACGGGGCAGCAGCAACCGCAGCAGCAACAGTCCCCATTGCC AGCGCTCGCAGCGGGCTATTACTCCGGTGGAGGCAGCGGTGGGTACGATC CAACCAATTGCGCGGGGGGCGCAGGGTTGGGAGCAGGGGGCGGCGCCCCG TCCTCCGCGCCCGTCGTCGGTACAAGCGCGGCCACCCTTCCCCTCCCTCT ACCCGCAGCGCCCCCCATTCCAGGCATGGGTCCTAACGGCATGGAAGGCG GCGCCCACGGCGACATGCACGGGGTTAACGGCGCACAAGCGGGCCACGAT GGCTGGATGATCGGGATTTCCCAGCATGATGCGAACGGGGTCGGCGGAGT CGGTGGTTCGCGGAACTTAAAGGCTAGGTTGGGCGGGTCCAGGCAGGACG GCGTAGCAGGAGGGGTGGTAGGAGATGGGAATGGGATAATGCAGCAGCAG CAGCAACAACAACAACAACAACACCACCAGCATCAGCAGCAACTAAGTGG AGACGGGGTAGAGGGTGGAGTTGGTCATCACAGTGACGTTTTGGGGATGT CTGTGGGCGTGGCGGAAGCAGCTGGGGCCAATCATGGCGCGCCGCACCAT GCTATCCACGGTCATGGTATACCGAATCACGAATTGCTGGAGATGAGTAT GGATGGGAGGGCAATGGGCCACAGCGGGAGCGCCACAGGCATGGGTGTGT CGATACAGATGGCGGTGGGTGAGATGGGTGTAGCGTCGGTCGGGATGGGG ACGATGGATGGGATGCCGGAGTTGGCAGAATCTGCCACGAGGGAAGAAAG GCGTCGGAAGAGGGAAGCGGCCCTCTTGATGCGCAACGAATGTTCCTTTT CGGGATGCAGGACCCGACCTTCGTTTGGCATCGAAGGAGACAAGCGACCG ACAGCTTGCTCGGAGCACCGCAGCGAGGGCATGGTGACGGTGAAATACAT CAAAAGCCGGAGCTGCGATTACGACGGTTGCACGACCTACCCGTCATACA ACGTCAAGGGGAAGCGACGAGCCCGGCGCTGTGGTAAACACCGCCTGGAC GGCATGGTGGATGTGAAAGCTCCGCGCTGTGAACATCCGGGTTGTCCCAC GCTTCCGTACTACGGGTCGGAGGGGGAGAAGAAGCGACGGTGGTGCGCGG TGCACAAGCTACCCGGTATGGTGGACGTCAAGAGCCGGAGGTGCGATTTC GAGACATGTTTGACCCAGCCAACGTACGGGATCCGCGGGGAAAACAGAGC GCGGCGTTGCGCCAAGCACAAAGACCCCGGGATGGTCAACATTGTTCACC GCCATTGTGAATTCGAGGGGTGCACAACACAGCCGTACTACGGCGTGGAG GGGAATCGCGGGGGCAGTCACTGCGCGGCGCACAAGTTACCCGGGATGGT GAAAACCAAGGGGCAGCGGTGTAACGGACCCGGGTGCTCTACTCGCCCCA GCTACGGGAACGACGGAGACAGGCGGCCGAGCTACTGTGGCAAGCACAAA GCACCCAACATGGTTGATGTAATCAACCGGCGATGCGAGGAGCCCGGGTG CGTTTCTCAACCAACCCACGCGATCGAAGGGACCGGCCTAGCGGTCCGCT GTGCTGTGCATTCGAGCAAGGGCATGGTGAACATCAAGTCTCGACGCTGC GAGTTGGAAGGGTGCAGCACGCAGCCCTATTACGGGCACGAAGGGGCGAA GCGTGGGACCCGGTGCTCCAAGCACAAGCTGCAGGGGATGATTGATGTCC ACAACCGGCGGTGCCAGCACGAGGGGTGTCAGGTATCGGCGTCGTTCGGG GTGAAGGAAGGGGGGAACGGAGCGACCCATTGTGCGAAGCACAAGATGCA AGGCATGGCGCCGCTTTATCGCAGGAAGGCGGTTGGGGGCAAGCTCTCTT CGCGTGCAGCAGCTGCCGCGGCGGCGGCTGCTGCTGCCGCCGTCGTAGCT GCAACTGCTGCGTCTGCCCCTCCTCCACCCACCCCTCCTGCGATGTGAGG AAGCGGCCCTCTTGATGCGCAACGAATGTTCCTTTTCGGGATGCAGGACC CGACCTTCGTTTGGCATCGAAGGAGACAAGCGACCGACAGCTTGCTCGGA GCACCGCAGCGAGGGCATGGTGACGGTGAAATACATCAAAAGCCGGAGCT GCGATTACGACGGTTGCACGACCTACCCGTCATACAACGTCAAGGGGAAG CGACGAGCCCGGCGCTGTGGTAAACACCGCCTGGACGGCATGGTGGATGT GAAAGCTCCGCGCTGTGAACATCCGGGTTGTCCCACGCTTCCGTACTACG GGTCGGAGGGGGAGAAGAAGCGACGGTGGTGCGCGGTGCACAAGCTACCC GGTATGGTGGACGTCAAGAGCCGGAGGTGCGATTTCGAGACATGTTTGAC CCAGCCAACGTACGGGATCCGCGGGGAAAACAGAGCGCGGCGTTGCGCCA AGCACAAAGACCCCGGGATGGTCAACATTGTTCACCGCCATTGTGAATTC GAGGGGTGCACAACACAGCCGTACTACGGCGTGGAGGGGAATCGCGGGGG CAGTCACTGCGCGGCGCACAAGTTACCCGGGATGGTGAAAACCAAGGGGC AGCGGTGTAACGGACCCGGGTGCTCTACTCGCCCCAGCTACGGGAACGAC GGAGACAGGCGGCCGAGCTACTGTGGCAAGCACAAAGCACCCAACATGGT TGATGTAATCAACCGGCGATGCGAGGAGCCCGGGTGCGTTTCTCAACCAA CCCACGCGATCGAAGGGACCGGCCTAGCGGTCCGCTGTGCTGTGCATTCG AGCAAGGGCATGGTGAACATCAAGTCTCGACGCTGCGAGTTGGAAGGGTG CAGCACGCAGCCCTATTACGGGCACGAAGGGGCGAAGCGTGGGACCCGGT GCTCCAAGCACAAGCTGCAGGGGATGATTGATGTCCACAACCGGCGGTGC CAGCACGAGGGGTGTCAGGTATCGGCGTCGTTCGGGGTGAAGGAAGGGGG GAACGGAGCGACCCATTGTGCGAAGCACAAGATGCAAGGCATGGCGCCGC TTTATCGCAGGAAGGCGGTTGGGGGCAAGCTCTCTTCGCGTGCAGCAGCT GCCGCGGCGGCGGCTGCTGCTGCCGCCGTCGTAGCTGCAACTGCTGCGTC TGCCCCTCCTCCACCCACCCCTCCTGCGATGTGA back to top
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