mRNA_H-paniculata_contig8702.16640.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8702.16640.1
Unique NamemRNA_H-paniculata_contig8702.16640.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8702.16640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8702contigH-paniculata_contig8702:5759..7690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1933
Cds size1932
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.9020529-CDS-H-paniculata_contig8702:5758..76901622931092.9020529-CDS-H-paniculata_contig8702:5758..7690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8702 5759..7690 +
1691481586.7434363-CDS-H-paniculata_contig8702:5758..76901691481586.7434363-CDS-H-paniculata_contig8702:5758..7690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8702 5759..7690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8702.16640.1prot_H-paniculata_contig8702.16640.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8702 5759..7690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8702.16640.1

>prot_H-paniculata_contig8702.16640.1 ID=prot_H-paniculata_contig8702.16640.1|Name=mRNA_H-paniculata_contig8702.16640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=644bp
MQLPVAEETQRQQQQQRRRRQPQQQTQQTQEQPTQSLVLETTGMGTRDSL
VLEAIGTTGNSGSGGDGGTSSLILESTGRDGGSLVLETTATTGTNCGMSV
PPLEQPAPVQPQARRHALDSTKGANAGCSLVLETTGRGANGAIAVPPPQT
LVQPQTRHEPIQTPAVGGIAAVSSAVRVQPSLAVQELQQQLHNELLRQRH
QQASARNADTTGGSGGGGGGGGSKRPSSYRYNNQPPASDVHSLSSGVKDI
NSSEEASEKASSTVVSPRAMVVEHTEEPCVMPLVLGGGGGSSGGNMHPLQ
QQQQQVLDTSPRHPHNSYDPVGGPSGHGASSPQHAANGLHGHNPAAHSHP
GVGAPPPLQQQQQQQQQHSGFIGGGEAGLVHDGTQEQRSSTSPLTLRVPA
VLPLSRQPQQEHQPQQHALQARQSHQHEHERQLHQRTPVLATENPSHLSQ
HYAAHDGNSSVSYGRPMDDNSGYPEDMVAGLDSTNSATDSSNHVAYTDQQ
RHESHYHHLRQHQQQPAVDLDYGSGDGGNVSNILNPSGSSGGGGGGGGGP
SSGEAGPGGFPVGLAPGSGPHSASPPVHHSHLQQQQQQLLPHLDPSLRHE
SYAAAQYHQQPLQQQQQQRPHSRGTPLGGGVLDESLVQQSGAGD
back to top

mRNA from alignment at H-paniculata_contig8702:5759..7690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8702.16640.1 ID=mRNA_H-paniculata_contig8702.16640.1|Name=mRNA_H-paniculata_contig8702.16640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1932bp|location=Sequence derived from alignment at H-paniculata_contig8702:5759..7690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTTCCCGTTGCGGAGGAAACTCAACGACAACAACAACAACAACG
ACGACGACGCCAACCGCAACAACAAACTCAACAGACACAGGAGCAGCCAA
CCCAGTCTCTCGTCTTGGAAACCACGGGAATGGGTACACGAGATTCGCTT
GTACTCGAGGCCATAGGAACGACAGGAAATAGTGGCAGCGGCGGCGACGG
CGGCACCAGTTCTTTGATATTGGAGAGCACGGGAAGGGATGGAGGGTCGT
TGGTGTTGGAGACGACTGCAACGACTGGTACAAATTGTGGCATGTCGGTG
CCGCCTTTGGAGCAGCCGGCGCCGGTCCAGCCGCAGGCCCGGCGGCATGC
TTTGGATAGCACGAAAGGGGCCAATGCCGGTTGCTCTCTTGTGCTGGAAA
CAACGGGGAGGGGTGCGAACGGTGCCATAGCGGTGCCGCCGCCACAGACA
CTAGTCCAGCCGCAGACCCGGCATGAGCCGATTCAGACGCCGGCCGTGGG
GGGAATCGCTGCCGTCTCCAGTGCAGTGCGAGTTCAACCTTCTCTGGCCG
TGCAAGAGCTCCAGCAACAGCTGCACAATGAACTCCTGCGCCAGCGTCAC
CAGCAGGCCTCTGCTAGAAACGCGGATACCACCGGCGGCAGCGGAGGCGG
CGGCGGCGGCGGCGGCAGTAAGCGGCCATCTTCTTATCGCTACAACAACC
AGCCACCGGCGTCAGATGTTCACAGCCTTTCTTCAGGCGTCAAGGACATC
AACAGCTCTGAAGAAGCTAGCGAGAAAGCTTCGTCTACAGTGGTTTCCCC
GCGGGCGATGGTGGTGGAGCACACGGAGGAGCCATGTGTAATGCCGCTGG
TGTTGGGTGGCGGAGGTGGTAGCAGTGGCGGCAACATGCATCCGCTGCAA
CAGCAGCAGCAGCAGGTACTCGATACGTCGCCGCGCCACCCTCACAACTC
TTACGATCCCGTCGGTGGCCCCAGCGGTCATGGCGCCTCTTCCCCACAAC
ACGCTGCAAATGGCCTTCACGGCCACAACCCTGCTGCACATAGCCACCCT
GGCGTTGGTGCGCCACCACCGCTGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACATTCTGGATTTATCGGTGGTGGCGAGGCGGGCCTTGTTCATGATGGCA
CGCAAGAACAGAGATCTTCGACCTCTCCGTTGACGCTAAGGGTACCAGCA
GTGCTCCCGTTGTCTCGACAACCACAGCAAGAACATCAACCACAACAACA
CGCTTTACAAGCTCGTCAAAGCCATCAACACGAGCATGAGCGGCAGCTCC
ACCAGCGGACCCCGGTGCTCGCCACCGAAAACCCCTCACACCTTAGCCAA
CACTATGCAGCCCACGACGGTAATAGTAGCGTCTCGTATGGCCGACCAAT
GGATGATAATAGCGGGTATCCGGAGGATATGGTTGCCGGCCTTGACAGCA
CAAATTCCGCTACTGATAGCAGCAACCACGTCGCCTATACGGACCAGCAA
CGCCACGAGTCGCACTACCACCACCTTCGGCAGCATCAGCAGCAGCCGGC
GGTAGATTTAGACTACGGTAGCGGCGACGGCGGCAACGTAAGCAACATCC
TCAATCCAAGCGGGAGCAGCGGCGGCGGCGGCGGCGGCGGCGGTGGACCA
AGTAGCGGTGAGGCAGGTCCAGGAGGATTCCCCGTAGGCCTTGCGCCGGG
TTCTGGTCCTCACAGCGCATCTCCTCCCGTGCATCACAGTCATCTTCAAC
AGCAGCAGCAGCAGCTGCTTCCTCACCTCGACCCCTCTCTTCGTCATGAA
AGTTACGCAGCAGCTCAGTATCATCAGCAGCCGTTGCAACAACAGCAACA
ACAACGACCACACTCACGAGGGACACCGCTGGGCGGTGGTGTATTGGATG
AATCGCTAGTGCAGCAAAGCGGAGCTGGGGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8702:5759..7690+

>mRNA_H-paniculata_contig8702.16640.1 ID=mRNA_H-paniculata_contig8702.16640.1|Name=mRNA_H-paniculata_contig8702.16640.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3864bp|location=Sequence derived from alignment at H-paniculata_contig8702:5759..7690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCTTCCCGTTGCGGAGGAAACTCAACGACAACAACAACAACAACG
ACGACGACGCCAACCGCAACAACAAACTCAACAGACACAGGAGCAGCCAA
CCCAGTCTCTCGTCTTGGAAACCACGGGAATGGGTACACGAGATTCGCTT
GTACTCGAGGCCATAGGAACGACAGGAAATAGTGGCAGCGGCGGCGACGG
CGGCACCAGTTCTTTGATATTGGAGAGCACGGGAAGGGATGGAGGGTCGT
TGGTGTTGGAGACGACTGCAACGACTGGTACAAATTGTGGCATGTCGGTG
CCGCCTTTGGAGCAGCCGGCGCCGGTCCAGCCGCAGGCCCGGCGGCATGC
TTTGGATAGCACGAAAGGGGCCAATGCCGGTTGCTCTCTTGTGCTGGAAA
CAACGGGGAGGGGTGCGAACGGTGCCATAGCGGTGCCGCCGCCACAGACA
CTAGTCCAGCCGCAGACCCGGCATGAGCCGATTCAGACGCCGGCCGTGGG
GGGAATCGCTGCCGTCTCCAGTGCAGTGCGAGTTCAACCTTCTCTGGCCG
TGCAAGAGCTCCAGCAACAGCTGCACAATGAACTCCTGCGCCAGCGTCAC
CAGCAGGCCTCTGCTAGAAACGCGGATACCACCGGCGGCAGCGGAGGCGG
CGGCGGCGGCGGCGGCAGTAAGCGGCCATCTTCTTATCGCTACAACAACC
AGCCACCGGCGTCAGATGTTCACAGCCTTTCTTCAGGCGTCAAGGACATC
AACAGCTCTGAAGAAGCTAGCGAGAAAGCTTCGTCTACAGTGGTTTCCCC
GCGGGCGATGGTGGTGGAGCACACGGAGGAGCCATGTGTAATGCCGCTGG
TGTTGGGTGGCGGAGGTGGTAGCAGTGGCGGCAACATGCATCCGCTGCAA
CAGCAGCAGCAGCAGGTACTCGATACGTCGCCGCGCCACCCTCACAACTC
TTACGATCCCGTCGGTGGCCCCAGCGGTCATGGCGCCTCTTCCCCACAAC
ACGCTGCAAATGGCCTTCACGGCCACAACCCTGCTGCACATAGCCACCCT
GGCGTTGGTGCGCCACCACCGCTGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACATTCTGGATTTATCGGTGGTGGCGAGGCGGGCCTTGTTCATGATGGCA
CGCAAGAACAGAGATCTTCGACCTCTCCGTTGACGCTAAGGGTACCAGCA
GTGCTCCCGTTGTCTCGACAACCACAGCAAGAACATCAACCACAACAACA
CGCTTTACAAGCTCGTCAAAGCCATCAACACGAGCATGAGCGGCAGCTCC
ACCAGCGGACCCCGGTGCTCGCCACCGAAAACCCCTCACACCTTAGCCAA
CACTATGCAGCCCACGACGGTAATAGTAGCGTCTCGTATGGCCGACCAAT
GGATGATAATAGCGGGTATCCGGAGGATATGGTTGCCGGCCTTGACAGCA
CAAATTCCGCTACTGATAGCAGCAACCACGTCGCCTATACGGACCAGCAA
CGCCACGAGTCGCACTACCACCACCTTCGGCAGCATCAGCAGCAGCCGGC
GGTAGATTTAGACTACGGTAGCGGCGACGGCGGCAACGTAAGCAACATCC
TCAATCCAAGCGGGAGCAGCGGCGGCGGCGGCGGCGGCGGCGGTGGACCA
AGTAGCGGTGAGGCAGGTCCAGGAGGATTCCCCGTAGGCCTTGCGCCGGG
TTCTGGTCCTCACAGCGCATCTCCTCCCGTGCATCACAGTCATCTTCAAC
AGCAGCAGCAGCAGCTGCTTCCTCACCTCGACCCCTCTCTTCGTCATGAA
AGTTACGCAGCAGCTCAGTATCATCAGCAGCCGTTGCAACAACAGCAACA
ACAACGACCACACTCACGAGGGACACCGCTGGGCGGTGGTGTATTGGATG
AATCGCTAGTGCAGCAAAGCGGAGCTGGGGACATGCAGCTTCCCGTTGCG
GAGGAAACTCAACGACAACAACAACAACAACGACGACGACGCCAACCGCA
ACAACAAACTCAACAGACACAGGAGCAGCCAACCCAGTCTCTCGTCTTGG
AAACCACGGGAATGGGTACACGAGATTCGCTTGTACTCGAGGCCATAGGA
ACGACAGGAAATAGTGGCAGCGGCGGCGACGGCGGCACCAGTTCTTTGAT
ATTGGAGAGCACGGGAAGGGATGGAGGGTCGTTGGTGTTGGAGACGACTG
CAACGACTGGTACAAATTGTGGCATGTCGGTGCCGCCTTTGGAGCAGCCG
GCGCCGGTCCAGCCGCAGGCCCGGCGGCATGCTTTGGATAGCACGAAAGG
GGCCAATGCCGGTTGCTCTCTTGTGCTGGAAACAACGGGGAGGGGTGCGA
ACGGTGCCATAGCGGTGCCGCCGCCACAGACACTAGTCCAGCCGCAGACC
CGGCATGAGCCGATTCAGACGCCGGCCGTGGGGGGAATCGCTGCCGTCTC
CAGTGCAGTGCGAGTTCAACCTTCTCTGGCCGTGCAAGAGCTCCAGCAAC
AGCTGCACAATGAACTCCTGCGCCAGCGTCACCAGCAGGCCTCTGCTAGA
AACGCGGATACCACCGGCGGCAGCGGAGGCGGCGGCGGCGGCGGCGGCAG
TAAGCGGCCATCTTCTTATCGCTACAACAACCAGCCACCGGCGTCAGATG
TTCACAGCCTTTCTTCAGGCGTCAAGGACATCAACAGCTCTGAAGAAGCT
AGCGAGAAAGCTTCGTCTACAGTGGTTTCCCCGCGGGCGATGGTGGTGGA
GCACACGGAGGAGCCATGTGTAATGCCGCTGGTGTTGGGTGGCGGAGGTG
GTAGCAGTGGCGGCAACATGCATCCGCTGCAACAGCAGCAGCAGCAGGTA
CTCGATACGTCGCCGCGCCACCCTCACAACTCTTACGATCCCGTCGGTGG
CCCCAGCGGTCATGGCGCCTCTTCCCCACAACACGCTGCAAATGGCCTTC
ACGGCCACAACCCTGCTGCACATAGCCACCCTGGCGTTGGTGCGCCACCA
CCGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAACATTCTGGATTTATCGG
TGGTGGCGAGGCGGGCCTTGTTCATGATGGCACGCAAGAACAGAGATCTT
CGACCTCTCCGTTGACGCTAAGGGTACCAGCAGTGCTCCCGTTGTCTCGA
CAACCACAGCAAGAACATCAACCACAACAACACGCTTTACAAGCTCGTCA
AAGCCATCAACACGAGCATGAGCGGCAGCTCCACCAGCGGACCCCGGTGC
TCGCCACCGAAAACCCCTCACACCTTAGCCAACACTATGCAGCCCACGAC
GGTAATAGTAGCGTCTCGTATGGCCGACCAATGGATGATAATAGCGGGTA
TCCGGAGGATATGGTTGCCGGCCTTGACAGCACAAATTCCGCTACTGATA
GCAGCAACCACGTCGCCTATACGGACCAGCAACGCCACGAGTCGCACTAC
CACCACCTTCGGCAGCATCAGCAGCAGCCGGCGGTAGATTTAGACTACGG
TAGCGGCGACGGCGGCAACGTAAGCAACATCCTCAATCCAAGCGGGAGCA
GCGGCGGCGGCGGCGGCGGCGGCGGTGGACCAAGTAGCGGTGAGGCAGGT
CCAGGAGGATTCCCCGTAGGCCTTGCGCCGGGTTCTGGTCCTCACAGCGC
ATCTCCTCCCGTGCATCACAGTCATCTTCAACAGCAGCAGCAGCAGCTGC
TTCCTCACCTCGACCCCTCTCTTCGTCATGAAAGTTACGCAGCAGCTCAG
TATCATCAGCAGCCGTTGCAACAACAGCAACAACAACGACCACACTCACG
AGGGACACCGCTGGGCGGTGGTGTATTGGATGAATCGCTAGTGCAGCAAA
GCGGAGCTGGGGAC
back to top