mRNA_H-paniculata_contig870.16638.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig870.16638.1 vs. uniprot
Match: D8LJ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ23_ECTSI) HSP 1 Score: 426 bits (1094), Expect = 2.080e-117 Identity = 569/1947 (29.22%), Postives = 712/1947 (36.57%), Query Frame = 1
Query: 1 RCTHPDFITQVVAGTDPERVGRESVERSAPWL--TPRLRWLAKALRDSVAERVWAAPQQAGPGEGI*TNGDPATLVSTAGTAAEAMSLLLQDLSHAYKGRRAAARRALQNVLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQAEADEEQCGWIFLCRDLPGWDEVAPLVVRAVRASVFYETSSDPIRYSLLALDLITR--------GTPNASDAKDEGPAGDDRDGEGXXXXXXXXXXVAGQDRWFFTFLLCRLLSGRKMVASSTLQRYPETFDLAASAVNAAVRGATVENVDLFAEGSVWADHTIAQFPCLDASTGGVKEVLLPRLLVETAIALLSFHTAGASPALELQDLQELMFPEYNPPGLAAPADTKSSAVSFASSGRSKSISLLK------IGAGAANLHLPASAEGSRVEQAAVGVKLWVRLAQAPSHQMSALAARYIPKMLLPRLLLASGLSRSCVKLTLTRLDELPTSSAGVDETYQDLISPESQGKWEIGPKVQSARDIREKLCRRVRAYLCSYKEDAADSSSDKERGKSHEDDNNGAERAAERGGXXXXXXXXXXXXXXDTDTEGKFLAWLSEIPTRHTGGGSRKRESSTSKSADSAAAMEKQQREISALFQLADALDMAVPAI------------------------------------------TSDTSRARTTCGG-VDVDESVEDHYESAEALDASVSKTGEGDAKNVEGGADRKAQSSGEQVEK---ENTLRGRVHRCLDYELNSLDSGNRDDSAAAGADDGRSSADRSSGDAAATGESDATGQEKEATVAGSGDDGAARRDEESKSGLSWLQTTLESRLILSTGAVHERSGVEISGILADLESWRTERSNEVLEQGENAFLLGSVTSSHLSKGRMPLTLMQSVPRPSNGGAYAPKEKVEVAEAEKRGERPGSGLGWVPVTRPPAEEGVGRKSELAGENDVHPGKRKSENSKEGAAKTWLAMRCVEASNAAGRVDEVFRRAKSVLLRVLLRS----------------------------EAEEHSRGDEEGLISNTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHGXXXXXXXXXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDDDXXXXDGNXXDGDGDXXXXXXXXXEEDAAWFKKPAKTPPPDPSSPVPVSSCHIPAAPSAVRLSSALQRDKQAIADFLLADPDEGALWDGVLYAKFLESSPANDNASKYSLSSWRNSLLHGMLRVSTPEQAERRLRTALREVGDRQGRTAGGALSD-RATAVLVLRGLCRLARDEQVIRSGPAVGEAGSIDALEAWARPYFERGTSPRASSHESSFWLTFTPREILKTLGVLDIPHGPFCFNLPVPYVQTRCLTKLALSSG--RGGFDVTPSRAV-IAVREEGAHLLLMACHQNVDNVKAAVSSLLEARGLQPVGTEKSGLDGDVNGTKVSHFCLSFCAMYLCLALCRDEPNAGILWSYHHFVLLSYVLRQIVVKEMNSASRMLQHDHSLREQVDED-------------------------------EDEEDG--MVKGVSDEGKAENDDVTGVAEYLLYQLYMAVPAEFIACIGLDTERQLLPLLEEQFVQCAPVTPSEAGPRGPGFGVVIAAQGLAGIRLTVGERETGGRLLRAATAAENLALLTDVARRLPLVFLEQVVTLTEIVLNDAEVERAAAALHTDGPRLNAHFNNGNNGTNNSVVGNGSAGAGATPS------------------------------MFQSGRKSPEHLCPVGAKLVDTIFDADGRPVGEPGVYILVNTRIWGQYFTRAVWEGVLSALRAAPPEVLSGPAGVPAGVPKLLEVFLDLIAVQLMIGRGPDVAALAANVKDLLELLGGLGRSLLQAMPPGGGRVW 5370
RCTHPDFITQVVAG+DPERVGRESVERSAPWL TPRLRWLA+ALRDSVAERVWA P EAM LLL+DL+H+Y+GRR +ARRALQ+VLA XXXXXXXXXX Q EAD EQCGW+F C+ LP W VAPLVV AVR SVFYETS+DPIR+SLL LDLITR XXXXX VAGQDRWFFTFLLC+LLSGRKMVAS+TLQRYPETFDLAASAVN A+RGATVE ++LFAEGSVW D +FPC++ASTG VK VLLP LL+ETAIALLSFH A A+ EL++LQELMFP +P A P + +GAGAA + + + AVGVKLWVRLAQAPS QMSALAAR VRAYLCS+ E +D ++GG XXXXXXXXX F+AWL++ P R G +S SR+R++ ++VDE V GG R++ G + + +R RV LD R+++A++ ADDG + D +G TG+S +G K+ A G + RR S RL S SG N E G P P G P V E++ +K +AG + LA RC EA+ RV++VFRRAK+ L LLRS E+E+ S+ G+D+ DG+ G G EE AP+A + L R +A + P G + SL +W H +P + + G+ S A + L +RGL RL + + P V + A + H + +E + G D VP L +S G GG V IA+REE + + + P G K+G S ++ +D E+ E G +V D + AEYLLYQL MA P+EF +G + ER++LP+L EQFV PSEAG RG G +V AA LAG L VGE+ G R AA+A + A+L DVARR+PLVFLEQV+ LTE++LNDAEVER+AAA + AG G +F+S R +P LCP A L TI D DGR VG G +LV+ R+WGQYFT AVW GVL ALRAAP ++ G AG AGVPKLLE +++L+AVQLM+ GP+VA LA N+++LLE LG +G ++L+A P W
Sbjct: 264 RCTHPDFITQVVAGSDPERVGRESVERSAPWLKETPRLRWLARALRDSVAERVWA-PXXXXXXXXXXXXXXXXXXXXXGSGGVEAMKLLLEDLAHSYQGRRESARRALQSVLAXXXXXXXXXXXGSGRVAWTPVRGRRGGEGEGGEERVVVL---QEEADREQCGWLFCCQSLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDLITRQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSRRGVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLNLFAEGSVWPDKPRTRFPCVEASTGEVKTVLLPPLLLETAIALLSFHRADANLTPELRELQELMFPSEHP--AATPLSSSXXXXXXXXXXXXXXXXXXXXXXXXLVGAGAAKM--------DGLVRDAVGVKLWVRLAQAPSQQMSALAAR-------------------------------------------------------------------------VRAYLCSH-EGISD----------------------QQGGGAGTDXXXXXXXXXXXXXXXLFVAWLADSP-RQAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSGRSRSRSSSRSPMNVDEGV--------------------------GGVGRRSGGGGTGARRGSLSDEIRRRVFEFLD----------REEAASSAADDGNKN-DSVTGTGPKTGDS-GSGNNKDEVEAKLGGESGRRR--------SAXXXXXXQRLPFSPRLSSNGSG------------------NGGFESG---------------------------PGPEPGDPAKPVPSATVKGEEEKAAT------------------AKKKKAVAGGRGL------------------LAARCAEAAETVSRVEDVFRRAKAAALEALLRSSCPPGLSAATTXXXXXXXXXXXSHATARESEQKPSAKXXXSSSSRGVKESAKSTVSHAAYTPHRAQQAIVDFLLSDPDDEALLEGILLPVLFPSSSSSAAPGEGYRDACSSYWHTLLLDAAIGTCTPATAERCLHLALRSAGNDEPVSDDGDGGSGGGLLRWGSWGADEEGEDLL-----------------------VAPTAAVVLRGLCR----LARVAIRAPQVGEV------------------GGADSLEAWARPYYHQRDAEGSPRAGLGSXXXXXXXXXXXXNKWSPGSASLWTAFSSLEIRGLVRL-----IFLALPGVPLPSTATAA------MRKXXXXXXXXXHGETGGKVPGGKEARE--GSDD--QXXXXXXXVVPREWAHLLLAACISGGVKSGGLAVAVDALTKIALREEXXXXXXXXXXXXXXXAGVRIKEEEDGALVPPTGDAKTGGPPSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTVDKTAKDTEXXXXXXXXXXXXXXXXXXXXXCAAATVKTEEMEGGTAVVDQGRDVARERRRVARAAAEYLLYQLCMAAPSEFAETVGPEMERRMLPMLAEQFVIRGAPIPSEAGSRGAGLRLVAAANALAGSGLIVGEKGAG-RKRAAASAGGHAAVLADVARRMPLVFLEQVLALTELLLNDAEVERSAAAAEWSSFQAEE------------------AGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLFRSRRIAPGRLCPAPALLGSTIVDTDGRAVGGKGAAVLVHIRLWGQYFTEAVWAGVLGALRAAPALLVGGAAGQAAGVPKLLEAYVNLVAVQLMVDNGPEVAQLAVNLRELLEGLGEMGVAVLEAPPXXXXXPW 1893
BLAST of mRNA_H-paniculata_contig870.16638.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE) HSP 1 Score: 329 bits (843), Expect = 5.810e-87 Identity = 260/587 (44.29%), Postives = 290/587 (49.40%), Query Frame = 1
Query: 1 RCTHPDFITQVVAGTDPERVGRESVERSAPWL----------------------------------------------------------------------------------------------------------------------------------------TPRLRWLAKALRDSVAERVWAAPQQAGPGEGI*TNGDPATLVSTAGTAAEAMSLLLQDLSHAYKGRRAAARRALQNVLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-QAEADEEQCGWIFLCRDLPGWDEVAPLVVRAVRASVFYETSSDPIRYSLLALDLITR------GTPNASDAKDEGPAGDDRDGEGXXXXXXXXXXVAGQDRWFFTFLLCRLLSGRKMVASSTLQRYPETFDLAASAVNAAVRGATVENVDLFAEGSVWADHTIAQFPCLDASTGGVKEVLLPRLLVETAIALLSFHTAGASPALELQDLQELMFPEYNP---PGLAAPADTKSSAVSFASSGRSKSISLLKIGAGAANLHLPASAEGSRVEQAAVGVKLWVRLAQAPSHQMSALAAR 1323
RCTHPDFITQVVAG+DPERVGRESVERSAPWL TPRLRWLA+ALRDSVAERVWA P EAM LLL+DL+H+Y+GRR +ARRALQ+VL XXXXXXXXXXXXXXX Q EAD EQCGW+F C+ LP W VAPLVV AVR SVFYETS+DPIR+SLL LD ITR XXXXXX VAGQDRWFFTFLLC+LLSGRKMVAS+TLQRYPETFDLAASAVN A+RGATVE +DLFAEGSVW D +FPC++ASTG VK VLLP LL+ETAIALLSFH A A+ EL++LQELMFP +P P ++ +GAGAA + + + AVGVKLWVRLAQAPS QMSALAAR
Sbjct: 1475 RCTHPDFITQVVAGSDPERVGRESVERSAPWLVSAVASEPDALLRRLPLAVTVHLLLLACYQAYEEDHARRTKEVVSASTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAANEAAEAVGATRGTGWAGLFDGPPRSGGGDGSGGRASGLKKETPRLRWLARALRDSVAERVWA-PXXXXXXXXXXXXXXXXXXXXXXNGGVEAMKLLLEDLAHSYQGRRESARRALQSVLXXXXXXXXXXXXXXXXXSGRVAWTPVRGRRGGEGEGAEERVVVLQEEADREQCGWLFCCQRLPAWTHVAPLVVHAVRDSVFYETSADPIRFSLLGLDRITRQQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRRRVAGQDRWFFTFLLCKLLSGRKMVASNTLQRYPETFDLAASAVNGALRGATVEGLDLFAEGSVWPDKPRTRFPCVEASTGQVKTVLLPPLLLETAIALLSFHRADANLTPELRELQELMFPSEHPAATPLSSSXXXXXXXXXXXXXXXXXXXXXXXLVGAGAAKM--------DGLVRDAVGVKLWVRLAQAPSQQMSALAAR 2052
BLAST of mRNA_H-paniculata_contig870.16638.1 vs. uniprot
Match: A0A6H5L4X7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X7_9PHAE) HSP 1 Score: 285 bits (728), Expect = 2.660e-74 Identity = 271/867 (31.26%), Postives = 347/867 (40.02%), Query Frame = 1
Query: 3430 RDKQAIADFLLADPDEGALWDGVLYAKFLESSPA------------NDNASKYSLSSWRNSLLHGMLRVSTPEQAERRLRTALREVGD------------------RQGRTA----GGALSDRATAVLVLRGLCRLARDEQVIRSGPAVGEAGSIDALEAWARPYFERGT---SPRASSHES-------------------SFWLTFTPREILKTLGVLDIPHGPFCFNLPVPYVQTRCLTKLALSSGRGGFDVTPSRAV-----------------IAVREEGAHLLLMACHQNVDNVKAAVSS---LLEARGLQPVGTEKSGLDGDVNGTKVSHFCLSFCAMYLCLALCRDEPNAGIL----------------------------------------------------------------------------------------------------WSYHHFVLLSYVLRQIVVKEMNSASRMLQHDHSLREQVDEDEDEEDGMVK----GVSDEGKAENDDVTGVAEYLLYQLYMAVPAEFIACIGLDTERQLLPLLEEQFVQCAPVTPSEAGPRGPGFGVVIAAQGLAGIRLTVGERETGGRLLRAATAAENLALLTDVARRLPLVFLEQVVTLTEIVLNDAEVERAAAALHTDGPRLN-AHFNNGNNGT-NNSVVGNGSA-----------------------GAGATPSMFQSGRKSPEHLCPVGAKLVDTIFDADGRPVGEPGVYILVN---TRIWGQYFTRAVWEGVLSALRAAPPEVLSGPAGVPAGVPKLLEVFLDLIAVQLMIGRGPDVAALAANVKDLLELLGGLGRSLLQAMPPGGGRVWKSAVEMLQAVPP 5406
R +QAI DFLL+DPD+ AL +G+L SS + D S Y W LL +R TP AER L ALR G+ R G G L +TA +VLRGLCRLARD +V P VGE G D+LEAWARPY+ + SPRA S S W F+ EI + ++ + + +P T L K G T RA V E AHLLL AC + V S + L + + ++E + ++ + V +E E D V GV+ E + AEYLLYQL MA P++F A +G + ER++LP+L EQFV PSEAG RG G +V AA LAG L VGE+ G R AA+A + A+L DVARR+PLVFLEQV+ LTE++LNDAEVER+AAA + A G GT NN G G GA +F+S R +P LCP A L TI D DGR VG G +LV+ R+WGQYFT AVW GVL ALRAAP ++ G AG AGVPKLLE +++L+AVQLM+ GP+VA LA N+++LLE LG +G ++L+A PP GG W ++ ML +VPP
Sbjct: 431 RAQQAIVDFLLSDPDDEALLEGILLPVLFPSSSSLSSSSAAPREGHRDACSSY----WHTLLLDAAIRKCTPATAERCLHLALRAAGNDEPAGDDGXXXXXXXXFLRWGSCGADEEGEDLLVASTAAVVLRGLCRLARDPRVAIIAPQVGEVGGADSLEAWARPYYHQRNAKGSPRAGLSNSLAGGGGGLAGGNKGSPGSGSLWTAFSSLEIRGLVRLIFVALP----GVRLPSTATAALRKKGAGGSGSGHGETGGRAAGGEVARASDVQQAAAASAVVPREWAHLLLAAC------ISGGVKSGGLAVAVDALTKIALREEXXXXXXXXXXXXXXXXXXXXXXXXXVRVKEEEDGALVPTPGDAMTGGPPSEGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAETCAVATVKTEEMEGDTAVVDQGGGVARERRRV---ARAAAEYLLYQLCMAAPSDFAATVGPEMERRMLPMLAEQFVIRGAPIPSEAGSRGAGLRLVAAANALAGSGLIVGEKGAG-RKRAAASAGAHAAVLADVARRMPLVFLEQVLALTELLLNDAEVERSAAAAEWSFFQAEEAGIGGGAGGTANNDGAGGGGXQXXXXXXXXXXXXXXXXXXXXXXXGGAAAPLFRSRRIAPGRLCPAPALLGSTIVDTDGRAVGGKGAAVLVSEVHVRLWGQYFTEAVWAGVLGALRAAPALLVGGAAGQAAGVPKLLEAYVNLVAVQLMVDNGPEVAQLAVNLRELLEGLGEMGAAVLEAPPPAGGGPWTTSRAMLVSVPP 1279
BLAST of mRNA_H-paniculata_contig870.16638.1 vs. uniprot
Match: A0A835Z0U3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U3_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 4.390e-14 Identity = 138/539 (25.60%), Postives = 184/539 (34.14%), Query Frame = 1
Query: 1 RCTHPDFITQVVAGTDPERVGRESVERSAPWLTPRLR---------------------------------------------WLAKALRDSVAERVWAAPQQAGPGEGI*TNGDPATLVSTAGTAAEAMSLLLQDLSHAYKGRRAAARRALQNVLASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQAEADEEQCGWIFLCRDLPGWDEVAPLVVRAVRASVFYETSSDPIRYSLLALD--LITRGTPNASDAKDEGPAGDDRDGEGXXXXXXXXXXVAGQDRWFFTFLLCRLLSGRKMVASSTLQRYPETFDLAASAVNAAVRGATVENVDLFAEGSV---WADHTIAQFPCLDASTGGVKEVLLPRLLVETAIALLSFHTAGASPALELQDLQELMFPEYNPPGLAAPADTKSSAVSFASSGRSKSISLLKIGAGAANLHLPASAEGSRVEQAAVGVKLWVRLAQAPSHQMSALAARYIPKMLLPRLLLASGLSRSCVKLTLTRLDELPTSSAGVDET-YQDLIS 1464
RC PDFIT V AG+DP+RV R+S E SA WL L W A ALR ++A + +A G DPA AA A+ LL DL H+ RRAAAR L+ VL+ A A+ E+C W+ C LP W + A V RA+R ++ ETS P+R+ L+AL L R P A A GE F LC L+ R MVA++TL+ E LA V +R T+ +VD A + W A P + + AD + + G G A +H ++ + AA+G WV LA+AP L+A +P LLPRLL ASG+S +CV L RLD A Y+++ S
Sbjct: 1114 RCKDPDFITAVAAGSDPQRVTRDSAESSAEWLVSALAAEPEVILRRLPLDVAAQLALMAHLAAPAGAXXXXXXXXXXXXXSDWQA-ALRRTLAPHLLGRVARAAWGT------DPAA-------AARALELLATDLGHSDGRRRAAARSTLRAVLSRRHGGAADGAGTLAMDVDAVEEEEQGPQAPAAVKAAAVAGGEAAAAEAEECEWLLACEALPCWGDAAAAVNRALRVALAVETSVRPMRWYLVALQRFLGDRAGPQAGGA-----------GEAAV----------------FCRTLCDLVCTRPMVAAATLRSDAEVAALARRHVTHTLR--TLLSVDSGAAAAAAPAWRRAPRALVPPSETAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------ADVAALERALFGGGTD--------GGSGAVVHAVLESDA---QIAAIGAAAWVDLARAPWPHAGELSAETMPLALLPRLLSASGVSAACVAAALRRLDAAAARDAAAGAAVYREVSS 1589 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig870.16638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig870.16638.1 >prot_H-paniculata_contig870.16638.1 ID=prot_H-paniculata_contig870.16638.1|Name=mRNA_H-paniculata_contig870.16638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1723bp MSLLLQDLSHAYKGRRAAARRALQNVLASPPAGRRRRTPRTVAWTPAAAAback to top mRNA from alignment at H-paniculata_contig870:691..31088- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig870.16638.1 ID=mRNA_H-paniculata_contig870.16638.1|Name=mRNA_H-paniculata_contig870.16638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=30398bp|location=Sequence derived from alignment at H-paniculata_contig870:691..31088- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig870:691..31088- >mRNA_H-paniculata_contig870.16638.1 ID=mRNA_H-paniculata_contig870.16638.1|Name=mRNA_H-paniculata_contig870.16638.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10338bp|location=Sequence derived from alignment at H-paniculata_contig870:691..31088- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |