mRNA_H-paniculata_contig8696.16632.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8696.16632.1
Unique NamemRNA_H-paniculata_contig8696.16632.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.130e-33
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   43 KREANGAGHLPNFEVGDYVLTARARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQDTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE-YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            +R A   G LP F VGDYV+ AR R+ G TPKL  TW GPWRVV     HV   Q+ V G   DVH  R+R YAD  L++  D+  VF+ +  +G  E+  ++++G  P  +G  Y+V+V W G +  DE +W+P+S I++D P +L+
Sbjct:    3 QRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEE-DEDTWQPLSDIYQDAPQFLK 147          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.680e-32
Identity = 67/160 (41.88%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    7 EVLQRVRRYRERKREANGAGHLPNFEVGDYVLTARARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQDTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE-YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            ++ Q+V   R R+R A   G LP F VGDYV+ AR R+ G TPKL  TW GPWRVV     HV   Q+ V G   DVH  R+R YAD  L++  D+  VF+ +  +G  E+  ++++G  P  +G  Y+V+V W G +  DE +W+P+S I++D P +L+
Sbjct:  246 QIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEE-DEDTWQPLSDIYQDAPQFLK 402          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.180e-31
Identity = 68/160 (42.50%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    7 EVLQRVRRYRERKREANGAGHLPNFEVGDYVLTARARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQDTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE-YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            +V Q+V   R R+R A   G LP F VGDYV+ AR R+ G TPKL  TW GPWRVV     HV   Q+ V G   DVH  R+R YAD  L++  D+  VF+ +  +G  E+  ++++G  P  +G  Y+V+V W G +  DE +W+P+S I++D P +L+
Sbjct: 1469 QVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEE-DEDTWQPLSDIYQDAPQFLK 1625          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: UPI001E1D7BCA (uncharacterized protein LOC123543770 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7BCA)

HSP 1 Score: 85.1 bits (209), Expect = 4.570e-17
Identity = 50/133 (37.59%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   73 PNFEVGDYVLTARARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQDTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGEYVVQVEWVGLDAADERSWEPVSTIHEDVP 471
            PNF++GD+VL A+   L  + KL   W GP RVV   S HV   +D  +G   D H+ R+R + D  LD+  D+ A  +   +E G+++  ++DL     + G + V V W+G +  D  +WEP++TI EDVP
Sbjct:   79 PNFDLGDFVLVAQREALVHS-KLSLRWRGPRRVVRVLSDHVYSVEDLSSGHVTDAHSTRLRFFHDSLLDVSADLLA--QVAHNEQGYDVRAIIDLRHS-AEHGHFEVLVAWLGFEPHD-YTWEPLTTIFEDVP 206          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: G4YEE3_PHYSP (Chromo domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEE3_PHYSP)

HSP 1 Score: 82.0 bits (201), Expect = 3.960e-16
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   76 NFEVGDYVLTARARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQ--DTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGEYVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            NF +GDYVL  R        KL   W GP+RV+G   A  N F+    ++G T  VHA R++ YAD +LD+      +      +  F +A   +  + P     Y V V W GL+  ++ SWEP++T+HEDVPV L+
Sbjct:   27 NFHIGDYVLWPRIDSEVHVNKLAVKWIGPYRVIG---AQANSFEIEHLLSGATRRVHASRLKMYADSSLDLRAFGEILEHIANQDVYFTVASFKEHRKHPAHS--YEVLVAWEGLEEIED-SWEPMTTMHEDVPVKLQ 158          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A6G0QQ14_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6G0QQ14_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.450e-15
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 1
Query:    4 REVLQRVRRYRERKREANGAGHLPNFEVGDYVLTAR--ARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQ--DTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE--YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            REV+    +  +R +         NF VGDYVL +R  A+K G+  KL  TW GP+RV+G   A+ N F+    +T  T   HA R++ YAD++LD+  ++ A      H    +I   V+      +     Y + V W GL+A ++ SWEPV+T+H+DVP+ L+
Sbjct:  197 REVVTAKEKQTKRNQSNQRGARSVNFHVGDYVLWSRVDAKKQGN--KLSVTWVGPYRVIG---ANANSFEIKHLITATTKFAHASRLKMYADQSLDINEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMHDDVPIKLQ 350          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: H3GNA9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNA9_PHYRM)

HSP 1 Score: 80.9 bits (198), Expect = 9.620e-15
Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   76 NFEVGDYVLTAR--ARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQ--DTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE--YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            NF VGDYVL +R  A+K G+  KL  TW GP+RV+G   A+ N F+    +T  T   HA R++ YAD++LD+  ++ A      H    +I   V+      +     Y + V W GL+A ++ SWEPV+T++EDVP+ L+
Sbjct:  900 NFHVGDYVLWSRVDAKKKGN--KLSVTWVGPYRVIG---ANANSFEIEHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYEDVPIKLQ 1029          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A6A3M013_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M013_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.230e-14
Identity = 55/142 (38.73%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   76 NFEVGDYVLTAR--ARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQ--DTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE--YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            NF VGDYVL +R  A+K G+  KL  TW GP+RV+G   A+ N F+    +T  T   HA R++ YAD++LD+  ++ A      H    +I   V+      +     Y + V W GL+A ++ SWEPV+T++EDVP+ L+
Sbjct:  508 NFHVGDYVLWSRVDAKKKGN--KLSVTWIGPYRVIG---ANANSFEIEHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYEDVPIKLQ 637          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A6A3MT93_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MT93_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.180e-14
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   76 NFEVGDYVLTAR--ARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQ--DTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGE--YVVQVEWVGLDAADERSWEPVSTIHEDVPVYLR 483
            NF VGDYVL +R  A+K G+  KL  TW GP+RV+G   A+ N F+    +T  T   HA R++ YAD++LD+  ++ A      H    +I   V+      +     Y + V W GL+A ++ SWEPV+T+++DVP+ L+
Sbjct:  180 NFHVGDYVLWSRVDAKKQGN--KLSVTWVGPYRVIG---ANANSFEIKHLITATTKFAHASRLKMYADQSLDVNEEMLA------HIANQDIYLTVEAFTQHRKHATHTYEILVRWEGLEAIED-SWEPVTTMYDDVPIKLQ 309          
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Match: A0A225VA87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VA87_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 4.180e-14
Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   64 GHLPNFEVGDYVLTARARKLGSTPKLVGTWAGPWRVVGGGSAHVNKFQDTVTGVTMDVHAVRIRPYADKALDMGMDVWAVFEATKHEGGFEIADVVDLGEDPVQEGEYVVQVEWVGLDAADERSWEPVSTIHEDVPV 474
            G L NF+VGD+VL +R  +     KL+G W GP++V+   S H  K +  VTG   DVH  R++ YAD AL+   ++    E    +G     D         + G + + V W+GL A ++ SWEP+ST+ +DVPV
Sbjct:  486 GALVNFDVGDFVLWSRIDQRLPNHKLLGQWVGPFKVIEALS-HSFKIEHLVTGRVYDVHGSRLKFYADAALNTMEEL---LELVSSQGMLLGVDKFIEHRYNPERGRWELLVSWLGLQAIED-SWEPLSTLLQDVPV 617          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8696.16632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE8.130e-3342.57Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE1.680e-3241.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE1.180e-3142.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
UPI001E1D7BCA4.570e-1737.59uncharacterized protein LOC123543770 n=1 Tax=Merce... [more]
G4YEE3_PHYSP3.960e-1636.96Chromo domain-containing protein n=1 Tax=Phytophth... [more]
A0A6G0QQ14_9STRA1.450e-1535.54Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
H3GNA9_PHYRM9.620e-1538.73Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3M013_9STRA1.230e-1438.73Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
A0A6A3MT93_9STRA2.180e-1438.03Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A225VA87_9STRA4.180e-1437.23Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8696contigH-paniculata_contig8696:8124..8606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue2.1e-13
Seed eggNOG ortholog164328.Phyra78074
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QI3H@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931091.59124-CDS-H-paniculata_contig8696:8123..86061622931091.59124-CDS-H-paniculata_contig8696:8123..8606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8696 8124..8606 -
1691481585.9712741-CDS-H-paniculata_contig8696:8123..86061691481585.9712741-CDS-H-paniculata_contig8696:8123..8606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8696 8124..8606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8696.16632.1prot_H-paniculata_contig8696.16632.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8696 8124..8606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8696.16632.1

>prot_H-paniculata_contig8696.16632.1 ID=prot_H-paniculata_contig8696.16632.1|Name=mRNA_H-paniculata_contig8696.16632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
QREVLQRVRRYRERKREANGAGHLPNFEVGDYVLTARARKLGSTPKLVGT
WAGPWRVVGGGSAHVNKFQDTVTGVTMDVHAVRIRPYADKALDMGMDVWA
VFEATKHEGGFEIADVVDLGEDPVQEGEYVVQVEWVGLDAADERSWEPVS
TIHEDVPVYLR
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mRNA from alignment at H-paniculata_contig8696:8124..8606-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8696.16632.1 ID=mRNA_H-paniculata_contig8696.16632.1|Name=mRNA_H-paniculata_contig8696.16632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig8696:8124..8606- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGCGAAGTGTTGCAGCGCGTTCGGCGGTACCGTGAGCGCAAACGGGA GGCGAATGGCGCGGGACACTTGCCGAATTTTGAGGTCGGAGACTATGTCC TCACAGCGCGCGCTCGCAAGCTTGGAAGCACCCCGAAGCTCGTCGGCACG TGGGCCGGCCCATGGCGAGTGGTCGGGGGTGGATCCGCGCATGTTAATAA GTTCCAAGACACTGTGACGGGGGTCACCATGGACGTGCATGCAGTTCGGA TACGGCCGTACGCGGACAAAGCACTGGATATGGGAATGGACGTTTGGGCA GTGTTCGAGGCAACGAAACACGAGGGGGGATTCGAAATCGCTGATGTCGT TGATCTCGGCGAGGACCCCGTCCAGGAGGGGGAGTACGTGGTGCAGGTGG AATGGGTGGGATTGGACGCTGCCGACGAGCGGAGTTGGGAACCAGTTTCC ACCATCCATGAGGATGTTCCGGTATACCTCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8696:8124..8606-

>mRNA_H-paniculata_contig8696.16632.1 ID=mRNA_H-paniculata_contig8696.16632.1|Name=mRNA_H-paniculata_contig8696.16632.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig8696:8124..8606- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGCGAAGTGTTGCAGCGCGTTCGGCGGTACCGTGAGCGCAAACGGGA
GGCGAATGGCGCGGGACACTTGCCGAATTTTGAGGTCGGAGACTATGTCC
TCACAGCGCGCGCTCGCAAGCTTGGAAGCACCCCGAAGCTCGTCGGCACG
TGGGCCGGCCCATGGCGAGTGGTCGGGGGTGGATCCGCGCATGTTAATAA
GTTCCAAGACACTGTGACGGGGGTCACCATGGACGTGCATGCAGTTCGGA
TACGGCCGTACGCGGACAAAGCACTGGATATGGGAATGGACGTTTGGGCA
GTGTTCGAGGCAACGAAACACGAGGGGGGATTCGAAATCGCTGATGTCGT
TGATCTCGGCGAGGACCCCGTCCAGGAGGGGGAGTACGTGGTGCAGGTGG
AATGGGTGGGATTGGACGCTGCCGACGAGCGGAGTTGGGAACCAGTTTCC
ACCATCCATGAGGATGTTCCGGTATACCTCAGGCAACGCGAAGTGTTGCA
GCGCGTTCGGCGGTACCGTGAGCGCAAACGGGAGGCGAATGGCGCGGGAC
ACTTGCCGAATTTTGAGGTCGGAGACTATGTCCTCACAGCGCGCGCTCGC
AAGCTTGGAAGCACCCCGAAGCTCGTCGGCACGTGGGCCGGCCCATGGCG
AGTGGTCGGGGGTGGATCCGCGCATGTTAATAAGTTCCAAGACACTGTGA
CGGGGGTCACCATGGACGTGCATGCAGTTCGGATACGGCCGTACGCGGAC
AAAGCACTGGATATGGGAATGGACGTTTGGGCAGTGTTCGAGGCAACGAA
ACACGAGGGGGGATTCGAAATCGCTGATGTCGTTGATCTCGGCGAGGACC
CCGTCCAGGAGGGGGAGTACGTGGTGCAGGTGGAATGGGTGGGATTGGAC
GCTGCCGACGAGCGGAGTTGGGAACCAGTTTCCACCATCCATGAGGATGT
TCCGGTATACCTCAGG
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