mRNA_H-paniculata_contig8681.16622.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8681.16622.1
Unique NamemRNA_H-paniculata_contig8681.16622.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8681.16622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8681contigH-paniculata_contig8681:4308..8825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_004100.1
Exons5
Model size904
Cds size900
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8681.16622.1prot_H-paniculata_contig8681.16622.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8681 4308..8823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.0190163-CDS-H-paniculata_contig8681:4307..43671622931090.0190163-CDS-H-paniculata_contig8681:4307..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 4308..4367 +
1691481585.380705-CDS-H-paniculata_contig8681:4307..43671691481585.380705-CDS-H-paniculata_contig8681:4307..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 4308..4367 +
1622931090.0406868-CDS-H-paniculata_contig8681:5191..53631622931090.0406868-CDS-H-paniculata_contig8681:5191..5363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 5192..5363 +
1691481585.3912482-CDS-H-paniculata_contig8681:5191..53631691481585.3912482-CDS-H-paniculata_contig8681:5191..5363Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 5192..5363 +
1622931090.0842614-CDS-H-paniculata_contig8681:5576..57931622931090.0842614-CDS-H-paniculata_contig8681:5576..5793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 5577..5793 +
1691481585.403352-CDS-H-paniculata_contig8681:5576..57931691481585.403352-CDS-H-paniculata_contig8681:5576..5793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 5577..5793 +
1622931090.1882956-CDS-H-paniculata_contig8681:6767..70651622931090.1882956-CDS-H-paniculata_contig8681:6767..7065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 6768..7065 +
1691481585.415555-CDS-H-paniculata_contig8681:6767..70651691481585.415555-CDS-H-paniculata_contig8681:6767..7065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 6768..7065 +
1622931090.2426245-CDS-H-paniculata_contig8681:8670..88231622931090.2426245-CDS-H-paniculata_contig8681:8670..8823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 8671..8823 +
1691481585.4255972-CDS-H-paniculata_contig8681:8670..88231691481585.4255972-CDS-H-paniculata_contig8681:8670..8823Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8681 8671..8823 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8681.16622.1

>prot_H-paniculata_contig8681.16622.1 ID=prot_H-paniculata_contig8681.16622.1|Name=mRNA_H-paniculata_contig8681.16622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp
PPSTFRAEQHEEEVLTFQPQILGLQPGMVRAREYVSLDVSERLHMLHRRQ
QTRRTKAVVTSGASTQESAEVSLQAADGNRNKLSEEERGLGNPLDFPAAG
GGDEESISRSDGPESEGGSMYIEEGDGREPRETKTRRGRGGRRCHSDVCS
TDKREGHGEQEPSSIHIISGISRPNKQRPRSAPLPRVGSRDQRGETEWDW
ARKGRQRDRPKPGGESARSGSRWLWPAGWESRNCNKDRTGSVGKRPRRQN
SISFGEFLTRQVHSQAVARQRLGRLTRMHSPSFSPQLSEGSRRIVAKNGA
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mRNA from alignment at H-paniculata_contig8681:4308..8825+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8681.16622.1 ID=mRNA_H-paniculata_contig8681.16622.1|Name=mRNA_H-paniculata_contig8681.16622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4518bp|location=Sequence derived from alignment at H-paniculata_contig8681:4308..8825+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCCAAGCACCTTTCGTGCGGAGCAGCACGAAGAGGAGGTACTTACCTT
CCAACCTCAGGTGAGCGAGTTTGCTGCTCTGTACAGTGAGTGGTATCGTG
GGGTACGCCTCCTTCACCGGGGCTTAGTTGCCACACAAGCACGGTGTCGA
AATGCGGTCCTGCCGAGATTTGATCTTTTTGGAGTAGAGGTGATGTACAG
ATATTTAAGCTTCAACGATTGTGTTGTCAGTAGTGCTATTAGTGAAACCA
TTATGTTGTCGTTAAGGTTAGATATTAGCTTTCTTGGTGGTGATGAGTGT
GATACACGTTAATCTGACGGTGGAGTGTCGTGGGTAACCTCAAGCAAAGT
CGCCGCAGAATCCTGGAAATGGTTTCTGTTCAGAGCGAGCATCAATGGCG
CTGCGACCAGAAAAGCGGATGTACAGCACATGATACTGGACAACTAAAAA
AACCACGTGTGTTTGATGCGCTTTTCTGAAACGGGGCTGCGGGGCGCCGG
ATGATGAATCGATAGCACTGTGACACAACCTACACACATTAGTGGTAGCC
ATACTCAACCAGACGAATAGCGGTTATTTGTCTCGTGTCGGCTTACGAAC
AGAAAAGGGTATGGCTACAGTAGGGCGTACCGTGCGGAGGAGAACTGACA
AAATACCGACGGGCCAAATGCATCTCTTAGATCAATATATACTACGTTAA
AGGGATGGGTATTTTTGACAGGTTTTTCTGACAAGAGGTGGTGTTACCGT
CGATCGGCATGTGTTTTTCAGAATGAGCCTTAGAAGGGATACTAGTGTGG
CTTTCGGTTCTCATCGTGTCTAAATGCCGTCTCCCAGCCACACTAGTTGA
ATCTATCGGGTCCATCGTCGTCGTCTTGGGGCAGATCTTGGGCCTCCAGC
CGGGAATGGTGCGAGCTAGGGAATACGTCAGCCTCGACGTGTCAGAACGC
TTGCACATGCTGCATCGCCGACAGCAGACCAGGCGGACAAAGGCAGTCGT
CACCAGCGGAGCTTCCACGCAAGAGAGTGCCGAGGTTTCCCTACAAGCAG
CGGATGGTGAGAATCAATCAGCATGGGGAGCGGGGGGCGCGGGGGTAGCG
TAGCTATATGTATATATATACATATATATATATATATACATGTGTGTGTA
TACGTAACGTAAGCGTGAAACAATTAGTTCGTGCTTATAGAACTACAGTC
AAATTAATCGAAACGTATTGAGCTATCTGTAAAGCTGTGACTGACCACAT
GTTGCCGATGATAAAACAGGAAACCGTAACAAGCTTTCTGAAGAGGAGAG
GGGCCTTGGCAACCCTCTCGATTTCCCAGCAGCTGGAGGGGGGGATGAGG
AGAGCATCTCAAGATCTGATGGCCCCGAAAGTGAAGGCGGATCGATGTAT
ATAGAAGAGGGTGATGGGAGGGAACCCCGAGAAACTAAAACCCGTCGAGG
GCGAGGTGGTAGGCGGTGTCACAGTGACGTGTGCAGGTGCGCCGCGAAAG
CTGACCTCTTGACTGTGCACGCTGTTCTACGATCGACACTGACTTTGCTG
TGAATTGCGCCATCGCTGCAACATTCACCGTGCATACTCACCGTTGATGT
CACGATGTCACTGGCTATTGCAACACACGATGCCGTCATTGGACCAGGAG
TTATCCCAGGGAGCCCTGCACGTGCCGTACTATTTTGTGCCCATGCTGCC
TCTTCGATAGCCAGCACCCGTTGCGGTATCCAGACCTATGCGCTGGAGTT
TGGCAGAATGCTTTCCCTTTTGTTAACGCTTCCTATTAACACGAAACCTT
GTACAATATTTTTTTACAGCAGCCGTGGTGTCGAGGTGGTTGTGTCGTCC
GGTTGTTGTTTTTGTTTCGAATCTTTCTCAAAATCTCGCTGTTGTGGTAC
TATGCTGTCATGCTCCTCGTTGTTTGCTCCTCACTGTACTGTGCTGCTCA
CAGTTAATTGATGTTTAAGACCCCGATAGCTTCCCCACTGGCCGCTTCCT
CTCCTCCAAGCTCCCCTCCTTCTTGTCCTTGCTTTTTGCCCTCATACCGC
TATACAATAATGTAGTCGTCTACCGTGCTAGTACCTCACGGGATGTGTCA
AGCCTTCGCGACGTATACCACACCTCGTTTGAAAATGTGTTCCACACTAG
ACTTCCTCGAATCCCATGGTGCAAGAGCTATTCTCGTGATGCCGAAAGAT
ATGTCGCTGGAACGATCTCGTTGGGTGCTATCGTTTAGATATGTGGACAG
ACTGGTCGTCTCGATCGTCCAGGAGATAGTCAGTAGGAAAATCATTTATA
CCCATCCATGAGGTGATCTCCCGGGGCGATATACTATAGTTCTACCGCAC
TTCTCTATCGTGAAGCGAACCACTTATGGCGAGCTTGCCTTACCAACACT
GACTAGCATACGAGTTATCAGCGACTAACCTCGCGCTGCTCTCGCTCCAA
ACGATTTCAGCACTGATAAGAGAGAAGGCCATGGAGAGCAGGAACCATCA
TCTATCCACATAATATCTGGAATATCCCGGCCGAACAAGCAGCGTCCGCG
ATCAGCACCCCTGCCGCGGGTAGGTAGCAGAGATCAGAGGGGAGAGACCG
AGTGGGATTGGGCACGAAAGGGTCGACAACGAGATCGCCCGAAGCCGGGA
GGGGAGAGCGCGAGGTCGGGGTCGAGGTGGTTATGGCCAGCCGGGTGGGA
GTCGAGGAATTGCAATAAAGATAGAACTGGTTCGGTCGGGAAGCGTCCAC
GACGTCAGGTGTGTTTCTTGCCTGTTTCCTCTACAATGTAAGGTATAAGG
TGTAAGACTTTTACACGAAACGTGTCCTACCGTAAGCTGCCGGTTCCCTG
CTGTGTGTTAGTGACAACAACTTGCCCTCTCTCGCGGACTGAACACCATT
TTGTTCAGTCGAGATGCAAGCCAAGAAAACAATCAATACTGTTGTCCAAC
TAGAATTTGATCGGAATATTTCGGTTCTCATTCTTTCTCAGAAGTGACTC
TGAGCATTGAAAACCAAGGGGTTCCAAGTAGGACCACTCATGGCCGACAT
AACATACAACTTGTATTGTCTATACAAGGTCAGGAGCTGTTTCAAATTGG
GCCACCATGGGGTGATTGATACCTTTTTATGGGCCAACGGTACTAGTATG
GCCATGTGGGATCTTGCCAAACTTGTGAAAAGGGCTTTGTCAGGCAGTTT
ATAGCACGGGGAGAGACAAACGTCATCATACAGCCTAGATCTCTTGGTCG
TGGGTACACGCAATACCCCCCAAAACTTCTACATTTCTAAGGATCCGCCG
TTAACACTCTATATTTTTCCTGGGGATATTCCGGCGCAATGTTATCAACC
ACTTGCAGCTTCTTCGTTATTCTTGGTCTGTGTGCTAGGTCCTACATTGT
TGTTCGTTGTCAAATAAGCCGTGAAAGCCATAGGTCCTTGAGGTAATATT
TCAGGTCAGATATTTTGCCTCCCAGGCTGCTTTGAGTATCCATAGCTTTG
TATGGCTTATCCCCACGAGTGGCGTCGCTTACGCTTCTCTTCAACTAGCC
TATTAATAACCATATATTCGGAATTGTCCATCATATGTCCATGACAGTCT
ACTTCCAGAATTAGCACTGCTTCTGGTTCGCTAGTTGTGCGGGTAAGTTT
TCCCAAAAATGTGTTTGTATGATAAGGCCGAAGCGTTGAGTGAGTGCTCG
TTGCCCTTCCCTACTGATGCCCATGCGGTTAAAATTGTCTATTGTACCTT
GATTTCGTGCGTCCTCCGTAAAATAATACGTTGGAGTAGGTCACATGCTA
CAATTCAATGTCAGAGCATAACTTCAGTAACAATGCCGTCTCGAATCTAA
TTCCTGCGGTGTCTCTCTCTTTCGCACCGCTCTCGTGCTGTAGGACTACG
CCCAAGAGTCAAAATGTGGCCTGAGCGCCGTGCAACGACAGAGGGGGAAT
GGAAACAAGAAAAATGTCAAATACCACCCCCCTGGGATTTTTCTCTAGCA
TCCCTAAATGAGGTTTTATTGACTTCAACTTCTGGGAATACGTTGCTACT
GGATGGTGCTACAATTTTAGGTTTTCCCCTAAAGGAGGCAATTTTTTTCC
TGTTTCAAAACACTTACACTTCTATCGTCGCAGGACTCCAAAGCGGAAAG
CTGAGGTCGCATTCCGTTTTCGTAGTGTATTCGCAATGAGCTATGTGCGA
AGCACTGTATAAAAATAAATAGCTCGACACGTTTCAACACTTCCCTTGAC
ACAAGGAATTTTACCAGAAATATACCTACACTACGTTTTTGTACTTCTGC
TTACGTCACCCCCACCCCCTCCCCGCCGATGCTTCACCCCTTTACCTTCA
ATCAAACCCGTAGAATTCCATTAGCTTCGGCGAATTTCTCACCAGACAGG
TCCATAGCCAGGCGGTAGCAAGGCAGCGCTTGGGGCGTTTGACACGTATG
CATTCTCCGAGTTTTTCCCCCCAGCTGTCGGAGGGCAGTCGACGAATAGT
AGCCAAGAACGGAGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig8681:4308..8825+

>mRNA_H-paniculata_contig8681.16622.1 ID=mRNA_H-paniculata_contig8681.16622.1|Name=mRNA_H-paniculata_contig8681.16622.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig8681:4308..8825+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCCAAGCACCTTTCGTGCGGAGCAGCACGAAGAGGAGGTACTTACCTT
CCAACCTCAGCCGCCAAGCACCTTTCGTGCGGAGCAGCACGAAGAGGAGG
TACTTACCTTCCAACCTCAGATCTTGGGCCTCCAGCCGGGAATGGTGCGA
GCTAGGGAATACGTCAGCCTCGACGTGTCAGAACGCTTGCACATGCTGCA
TCGCCGACAGCAGACCAGGCGGACAAAGGCAGTCGTCACCAGCGGAGCTT
CCACGCAAGAGAGTGCCGAGGTTTCCCTACAAGCAGCGGATGATCTTGGG
CCTCCAGCCGGGAATGGTGCGAGCTAGGGAATACGTCAGCCTCGACGTGT
CAGAACGCTTGCACATGCTGCATCGCCGACAGCAGACCAGGCGGACAAAG
GCAGTCGTCACCAGCGGAGCTTCCACGCAAGAGAGTGCCGAGGTTTCCCT
ACAAGCAGCGGATGGAAACCGTAACAAGCTTTCTGAAGAGGAGAGGGGCC
TTGGCAACCCTCTCGATTTCCCAGCAGCTGGAGGGGGGGATGAGGAGAGC
ATCTCAAGATCTGATGGCCCCGAAAGTGAAGGCGGATCGATGTATATAGA
AGAGGGTGATGGGAGGGAACCCCGAGAAACTAAAACCCGTCGAGGGCGAG
GTGGTAGGCGGTGTCACAGTGACGTGTGCAGGAAACCGTAACAAGCTTTC
TGAAGAGGAGAGGGGCCTTGGCAACCCTCTCGATTTCCCAGCAGCTGGAG
GGGGGGATGAGGAGAGCATCTCAAGATCTGATGGCCCCGAAAGTGAAGGC
GGATCGATGTATATAGAAGAGGGTGATGGGAGGGAACCCCGAGAAACTAA
AACCCGTCGAGGGCGAGGTGGTAGGCGGTGTCACAGTGACGTGTGCAGCA
CTGATAAGAGAGAAGGCCATGGAGAGCAGGAACCATCATCTATCCACATA
ATATCTGGAATATCCCGGCCGAACAAGCAGCGTCCGCGATCAGCACCCCT
GCCGCGGGTAGGTAGCAGAGATCAGAGGGGAGAGACCGAGTGGGATTGGG
CACGAAAGGGTCGACAACGAGATCGCCCGAAGCCGGGAGGGGAGAGCGCG
AGGTCGGGGTCGAGGTGGTTATGGCCAGCCGGGTGGGAGTCGAGGAATTG
CAATAAAGATAGAACTGGTTCGGTCGGGAAGCGTCCACGACGTCAGCACT
GATAAGAGAGAAGGCCATGGAGAGCAGGAACCATCATCTATCCACATAAT
ATCTGGAATATCCCGGCCGAACAAGCAGCGTCCGCGATCAGCACCCCTGC
CGCGGGTAGGTAGCAGAGATCAGAGGGGAGAGACCGAGTGGGATTGGGCA
CGAAAGGGTCGACAACGAGATCGCCCGAAGCCGGGAGGGGAGAGCGCGAG
GTCGGGGTCGAGGTGGTTATGGCCAGCCGGGTGGGAGTCGAGGAATTGCA
ATAAAGATAGAACTGGTTCGGTCGGGAAGCGTCCACGACGTCAGAATTCC
ATTAGCTTCGGCGAATTTCTCACCAGACAGGTCCATAGCCAGGCGGTAGC
AAGGCAGCGCTTGGGGCGTTTGACACGTATGCATTCTCCGAGTTTTTCCC
CCCAGCTGTCGGAGGGCAGTCGACGAATAGTAGCCAAGAACGGAGCGAAT
TCCATTAGCTTCGGCGAATTTCTCACCAGACAGGTCCATAGCCAGGCGGT
AGCAAGGCAGCGCTTGGGGCGTTTGACACGTATGCATTCTCCGAGTTTTT
CCCCCCAGCTGTCGGAGGGCAGTCGACGAATAGTAGCCAAGAACGGAGCG
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