mRNA_H-paniculata_contig8674.16614.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8674.16614.1
Unique NamemRNA_H-paniculata_contig8674.16614.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 5.010e-70
Identity = 144/341 (42.23%), Postives = 193/341 (56.60%), Query Frame = 2
Query:   68 VGVARI*I*ITGGAYRTRQTSGKMSALRQDAVEV--AVCTTAAATMLLQLNDTLACAYLVL*QSARDDSDAEDEGD-GRHPKKQRRVYVRSPYSESAWGRMLQFL---DLTDPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*-----GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHR 1057
            +GVAR+   +   A R        +A     ++V  A  TTA AT  LQ        + V+ +   DD + + E D      K+RRVYVR  Y++S W + L  L     TD  +R+ARRFR  F +PYPF V L+++V++  WFP   G  DV GR+ VP+ELKVLA LQIL RGN F DI  +S IS  T  S FH FCK FA +L+ E +  PT E L   M+ YD +GF G V ST       G  P +   +YT KEG PT+A++ TVDHSGRVL + +   GA ND++++R+DK +   R    Y    YKL  +DG +  EKG +L+VD GYH+
Sbjct:   12 LGVARLGCALVLPAGRVVHRQMAETATESGGIDVPAAFATTAVATASLQQLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPT--GESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK 350          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.110e-61
Identity = 132/321 (41.12%), Postives = 176/321 (54.83%), Query Frame = 2
Query:  131 GKMSALRQDAVEV-AVCTTAAATMLLQLNDTLACAYLVL*QSARDDSDAEDEGDGRHPKKQRRVYVRSPYSESAWGRMLQFLD------LTDPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHR 1057
            G MS+    AV V A  + A A    Q   TL    LVL      D D+E+E +     K+RRVY R  Y+ S W   LQ L       + DP SR ARRFR  F +PYPF VEL+ +V++  WFP   G  D +GRR +P++LKVLA LQIL RGN F DI  +S IS  TA + FH F + FA +++ E I  PT +     M  YD +GF+G   ST       G  P +    YT KEG+PT+AY+ TVDH+ RVL +     G+ ND+S++R+D  +   RE   Y    + + + DG     KG +L+VD GYH+
Sbjct:   16 GTMSSSETGAVNVPAAFSVALAAFNQQQQRTLVAWDLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPT--GKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHK 334          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 7.400e-55
Identity = 120/302 (39.74%), Postives = 165/302 (54.64%), Query Frame = 2
Query:  260 DDSDAEDEGDGRHPKKQRRVYVRSPYSESAWGRMLQFLDLTDPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRVSQVLLFDGHCCWTTVQKCVL*FY-IIRRQF 1147
            +DS+ E+E  G   K+ RRV  R  +  SAW   LQ +DL D  +  A+ FR RF +PYPF  EL+K+ +  +WF    G  D A R  +PLELKVL       +GN FDD+ QLS +SES AQ+ FH FC+  A ++F E I  PT   L   M  +  +G TG   ST          P +    +T KEGFPT+AYE TVDH+GR L +    AG  ND++ +R+D  +   R    Y    YKLR  +G E+  +G  LIVD GY+  ++   F  H    +V+K V  F+ I++ +F
Sbjct:   46 EDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSP--GEKDAANREGIPLELKVLG------KGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESNEDTAFSRHL--ESVRKDVECFFGILKGRF 337          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.200e-51
Identity = 106/266 (39.85%), Postives = 153/266 (57.52%), Query Frame = 2
Query:  299 PKKQRRVYVRSPYSESAWGRMLQFLDLT-DPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGR---RMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*GCI-----PVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRVSQV 1069
            PK++R V  R+ Y    W RML+  DL  DP++R+A++FRRRF +PYPF + L+  V+ G W        ++ GR   R +P+E KVLA L+IL RGN FDD+ +++ + E+T    FH F +RFA ++F   ++ P E+ L   MK YD VG +G + S     I     P S    +  KEG+ TL +   V H  RVL   +   GA ND+++++FDK   A R G  Y+ + Y L+ +DG +  EKG  LIVD GYH   Q+
Sbjct:   49 PKRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNGW-YKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQL 313          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 5.150e-46
Identity = 98/247 (39.68%), Postives = 141/247 (57.09%), Query Frame = 2
Query:  338 SESAWGRMLQFLDLTDPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEET--LAATMKPYDAVGFTG*VDSTA*GCI-----PVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHR 1057
            S  AW ++L+  DL DP S  A++FR  F +PYPF + L+++V++  WF   +   D  GRR  P+E KVLA L IL RGN F  I  LS +S  T Q  FH FC+ FA +++ E I  P+EE   L   M  Y+ +GF G + ST    I     P +    YT KEG PT+ Y+ TV+H+GRVL + +   G+ ND++++  D+ +   R  + Y    + +  KDG  +  KG +LIVD GYH+
Sbjct:   61 STCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQR--DAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHK 305          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 1.100e-45
Identity = 107/262 (40.84%), Postives = 145/262 (55.34%), Query Frame = 2
Query:  302 KKQRRVYVRSPYSESAWGRMLQFLD--LTDPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGRRM---VPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*GCI-----PVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHR 1057
            K++R VY R  Y  SAW  ML+  +  L DP ++DAR FRRRF +PYP  +EL+K ++   W        D+ GR     +P+ELKVL       RGN FDDI QLS ISE T Q  FH F +RFA + F + +K P    L   ++ Y  VGF G   S     I     P S    Y  KEGF T+A+E   DH  R LG+ K   GAMND+++V FD+ ++  +     + + + L  +DG E  E+G++LIVD GYH+
Sbjct:   53 KRKRTVYPRPDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVLG------RGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFATVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKT--ECKDVPFTLLGEDGSEFEERGLYLIVDGGYHK 306          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5KLF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLF8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.040e-45
Identity = 106/280 (37.86%), Postives = 152/280 (54.29%), Query Frame = 2
Query:  257 RDDSDAEDEGDGRHPKKQRRVYVRSPYSESAWGRMLQFLDLT-DPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVDVAGR---RMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*GCI-----PVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRVSQV 1069
            R++ D  DE     PK +R V  R+      W RML+  DL  DP++R+A++FRRRF +PYPF + L+  V+ G+W        ++ GR   R +P+E+ VL   +IL RGN FDD+ +++ + E+T    FH F  RFA + F   ++ P E+ L   MK YD VG TG + S     +     P S    +  KEG+ TL Y   V H  RVL   +   GA ND+++V+FDK     R G  Y+ + Y L+ +DG +  EKG  LIV  GYH   Q+
Sbjct:    3 REEEDGCDEEP--RPKCRRTVRPRADDRALPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDGVKAGKWPGFTTNEFELGGRGTRRCIPVEIDVL---RILGRGNYFDDVSEVTGMGEATVNQLFHKFTGRFAREFFPVWVRMPNEDELKEIMKTYDEVGMTGAMGSMDGTHLQWTVCPYSERSSHVGKEGYATLVYNVAVSHDMRVLSCTRGFPGAQNDKTIVKFDKFATEVRNGW-YKDVEYTLKGEDGGDIKEKGPWLIVGGGYHNWKQL 276          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 3.860e-45
Identity = 109/268 (40.67%), Postives = 146/268 (54.48%), Query Frame = 2
Query:  311 RRVYVRSPYSESAWGRMLQFLDLTD------PNSRDARRFRRRFGIPYPFV---VELMKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRVSQVL 1072
            R    R  YS SAWG  L  L+         P+SR+A+ FR  F +P+ F    V+L++ V     FP      DVAGR+ VPLELKVL  LQ+L RGN F D+ QLSL+S  TA+ +FH FC  F+  L+H+ +  P  E L      Y  +G  G V S      +    P S T+ +  KEG+ TL YEA+ DHSGR+L   K   GA ND+++V+ D ++   RE EP+ S  + L D +G      G  LIVD GYHRV  ++
Sbjct:   33 RETRERPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRVPHEFFRHFVDLVRTV-----FPTATR--DVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLI 293          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 2.560e-39
Identity = 83/181 (45.86%), Postives = 108/181 (59.67%), Query Frame = 2
Query:  530 PLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDSTA*-----GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHR 1057
            P   +VLA LQIL RGN F DI  +S IS  T  S FH FCK FA +L+ E +  PT E L   M+ YD +GF G V ST       G  P +   +YT KEG PT+A++ TVDHSGRVL + +   GA ND++++R+DK +   R    Y    YKL  +DG +  EKG +L+VD GYH+
Sbjct:   79 PPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHK 259          
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.160e-38
Identity = 90/235 (38.30%), Postives = 123/235 (52.34%), Query Frame = 2
Query:  392 SRDARRFRRRFGIPYPFVVELMKVVQEGQWFP----KREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKRFA*DLFHELIKPPTEETLAATMKPYDAVGFTG*VDST-----A*GCIPVSHTDLYTDKEGFPTLAYEATVDHSGRVLGIMKEMAGAMNDRSMVRFDKTLQAAREGEPYRSMAYKLRDKDGVEQMEKGVHLIVDEGYHRVSQV 1069
            +R + R+ R++    P   E  + +    WF     +  GH+            K+L +LQIL RGN FDDI QLSL+S+  A + FH FCK FA +LF E I  PT       M  YD +G TG + ST       G  P +    YT KEGFPT+AY+ TVDH+GR + I     GA ND++++R+D  +   +    Y    YKLR  DG  +  KG + IVD GYH V+ +
Sbjct:  200 TRTSHRWHRKYCCRRPTAREKRRTL----WFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSL 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8674.16614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPH7_9PHAE5.010e-7042.23Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.110e-6141.12Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE7.400e-5539.74DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K8I3_9PHAE1.200e-5139.85Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE5.150e-4639.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.100e-4540.84DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KLF8_9PHAE3.040e-4537.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE3.860e-4540.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE2.560e-3945.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.160e-3838.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8674contigH-paniculata_contig8674:2116..4837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog159749.K0T1Y8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1456
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8674.16614.1prot_H-paniculata_contig8674.16614.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8674 2474..4048 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.2778249-UTR-H-paniculata_contig8674:2115..24731622931089.2778249-UTR-H-paniculata_contig8674:2115..2473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 2116..2473 +
1691481584.9891925-UTR-H-paniculata_contig8674:2115..24731691481584.9891925-UTR-H-paniculata_contig8674:2115..2473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 2116..2473 +
1622931089.3584757-UTR-H-paniculata_contig8674:4048..48371622931089.3584757-UTR-H-paniculata_contig8674:4048..4837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 4049..4837 +
1691481585.0255163-UTR-H-paniculata_contig8674:4048..48371691481585.0255163-UTR-H-paniculata_contig8674:4048..4837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8674 4049..4837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.318061-CDS-H-paniculata_contig8674:2473..26591622931089.318061-CDS-H-paniculata_contig8674:2473..2659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 2474..2659 +
1691481585.0019207-CDS-H-paniculata_contig8674:2473..26591691481585.0019207-CDS-H-paniculata_contig8674:2473..2659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 2474..2659 +
1622931089.3363702-CDS-H-paniculata_contig8674:3925..40481622931089.3363702-CDS-H-paniculata_contig8674:3925..4048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 3926..4048 +
1691481585.0137687-CDS-H-paniculata_contig8674:3925..40481691481585.0137687-CDS-H-paniculata_contig8674:3925..4048Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8674 3926..4048 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8674.16614.1

>prot_H-paniculata_contig8674.16614.1 ID=prot_H-paniculata_contig8674.16614.1|Name=mRNA_H-paniculata_contig8674.16614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MLQFLDLTDPNSRDARRFRRRFGIPYPFVVELMKVVQEGQWFPKREGHVD
VAGRRMVPLELKVLASLQILERGNSFDDIGQLSLISESTAQSAFHTFCKR
FA*
back to top

mRNA from alignment at H-paniculata_contig8674:2116..4837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8674.16614.1 ID=mRNA_H-paniculata_contig8674.16614.1|Name=mRNA_H-paniculata_contig8674.16614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2722bp|location=Sequence derived from alignment at H-paniculata_contig8674:2116..4837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACCTCTCTATCGGCCGTTTTCTCACCCATTTTTTTTATCGGGCGCGCGT CGCGCGATTCGTCGCGCGTCGGGGTCGCGCGCATTTAAATTTAAATCACG GGAGGTGCATACCGCACACGACAGACTTCTGGCAAGATGAGCGCTCTCCG TCAAGATGCAGTTGAGGTAGCTGTGTGTACAACAGCTGCCGCCACAATGT TGTTACAGTTGAATGACACTTTAGCGTGTGCATATCTGGTATTGTAGCAA TCTGCCCGTGATGATAGTGATGCTGAAGATGAAGGAGATGGGCGACACCC AAAGAAGCAGAGAAGGGTGTATGTTCGGTCGCCCTACAGTGAATCGGCGT GGGGAAGGATGCTGCAGTTCCTCGATCTCACGGACCCCAATTCGAGAGAC GCCCGCCGCTTCAGGAGGCGCTTTGGTATACCCTATCCTTTTGTCGTGGA GCTGATGAAGGTGGTGCAAGAAGGACAATGGTTTCCGAAGAGAGAGGGGC ACGTCGATGTCGCCGGTCGCCGAATGGTTCCCCTGGAGCTGAAGGTACGC AGCACGACACCAGGCGATGTCGCAACCAGCGTTTCACGCGATCATGCGCC TGAATAGGAAATGGCTTGTGTTGTATGTGGCAGCCAATTTCCCTCAGTTT ACTGTTGCATTGAAATGCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGTT TCTTCCACCATACAGTGGTGCCTCAGTTGTGCTCTGCTGTACAGACGGTA AGATCTGTGTCTGTCACTGTGCATGACAGAAGTCGTCCTCCAATTTACAG TTGAGTAGAACTGTGATGATGCGAAGCTAACTTGTATTGTACGTTACTGT AATTTCTGGCCTCATCCCTGTGCAGTACAACCTGTACTATCTTCGAACAT ACCGTGGTACAAAAGGTATGACCCTGCGAAGCTGCAGTACATCGAATATA TGATGGTAGTGACCACAATAATAATAAAAATAACGTTATTTTTGAAGAGA ATTTTCGTCATTTCCCCACCAAAGGCTGCCGAATCAGGCAGGGTGCGGGG GATACAAATTGAAGCACTGCACCGTCTCGACAACATGCCATTGAAAAAAT TCAAATTGGGCAACATTCAGTCATCAAAGAAGTTCAAGGTAATCGTTAAA AAACGTGGTATTTATTAGTGGCCATTGTAAATGTTGTATTGTCTCTTTTT TCGTGTCGGTAAGGGGTGCTGCTTACACCTGTCGAGAATCGTTGTTTCGT CATTAGCTTTGCTGAGCAAAGAATATCCGGACCACCCAGTTGACGCGATG AGCTTGTACCTTAAGCATGACGCGCGATGCAATACAGGATCCCCCTAAAT TGTAATCGTATTGTATTTTGTTCGATTTTGCTGTGGGTGCATTAGACGCT TTAGTTCTCGTTTATTGGTAAGTTGGATGGGTTACCGTGTTCAATTTACC TCTTGTCGTGGTCCTTGTCTCTCACGAGGTTACACTGTCAGAAGGTGAAT TACGGTTTGTACACAATCGTAACACACCGCGAAAGAAAATCCCAGGATAA CAGTCGCGGTGGATTGGCTTCCGTAGGGGTGTCTTAGGCCCATCGAAACA GTGCCACCTCGCCTTGCTGAGGGCGATTGGTCTTGGATAAGCCGAGGTGC GTCTTCGCAAGTATTCGTTTTCAGTGAGGCCATCGCACTGGGAACATGAG CGTCGTCAGCCAATTTTCTGCCTAATAATATTTTGTAATCCCAGCCGCCG TCAGTACGGCCAAGTGCTTCATACGATTCCGTAACCCCTACCGTCGCGGC GCTACTACAGGTTCTGGCGAGCTTGCAGATTCTGGAGAGAGGGAATAGCT TCGATGATATCGGCCAGCTCTCCTTGATAAGCGAGTCGACTGCCCAAAGT GCGTTCCATACATTTTGCAAGCGTTTCGCTTAAGATCTTTTTCATGAGTT GATTAAACCCCCTACCGAGGAGACCCTCGCAGCCACAATGAAGCCGTACG ATGCGGTGGGCTTTACAGGGTAAGTAGACTCGACCGCATGAGGTTGCATC CCGGTGTCACATACTGATCTCTACACGGACAAGGAAGGATTCCCGACTCT TGCCTACGAGGCAACGGTAGACCACTCGGGGCGGGTACTTGGGATAATGA AGGAAATGGCCGGAGCAATGAACGATAGATCCATGGTTCGTTTCGACAAG ACATTACAAGCGGCCAGGGAGGGTGAGCCGTACAGGTCGATGGCTTACAA GCTCCGCGATAAGGATGGCGTGGAACAGATGGAGAAGGGTGTTCACCTCA TCGTCGACGAAGGATATCACCGGGTGAGTCAAGTGCTGTTGTTTGATGGT CATTGCTGCTGGACTACCGTACAGAAATGCGTTTTATAGTTTTACATCAT ACGGCGACAATTTCTTTGTTTCTTACAAGCATACAATTGTACCCCGTTTA GTGTTGTGTATCAACCACACCCCGCCTGCGATGTCCAACTTCGTTGATAT CAACTTAAACGGCTGCCTGAGGTCCCACTTTGTGAGCCGCAATTCTAGAC TCACGGTACGTTCGTTTCAAATATTACCAGCAGACGAGGTGCAAACTAGG AGACAGCAAGCTTCCTTGACATAAGTAGCAGCTACGCGAAATCCGTAGGT CGCATCTTGTGGCGTATCTTGTTAAAGCGCAGGCCATGCCACCGTTGACA AGGAATTTGCTAGGATGATAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8674:2116..4837+

>mRNA_H-paniculata_contig8674.16614.1 ID=mRNA_H-paniculata_contig8674.16614.1|Name=mRNA_H-paniculata_contig8674.16614.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig8674:2116..4837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAGTTCCTCGATCTCACGGACCCCAATTCGAGAGACGCCCGCCG
CTTCAGGAGGCGCTTTGGTATACCCTATCCTTTTGTCGTGGAGCTGATGA
AGGTGGTGCAAGAAGGACAATGGTTTCCGAAGAGAGAGGGGCACGTCGAT
GTCGCCGGTCGCCGAATGGTTCCCCTGGAGCTGAAGATGCTGCAGTTCCT
CGATCTCACGGACCCCAATTCGAGAGACGCCCGCCGCTTCAGGAGGCGCT
TTGGTATACCCTATCCTTTTGTCGTGGAGCTGATGAAGGTGGTGCAAGAA
GGACAATGGTTTCCGAAGAGAGAGGGGCACGTCGATGTCGCCGGTCGCCG
AATGGTTCCCCTGGAGCTGAAGGTTCTGGCGAGCTTGCAGATTCTGGAGA
GAGGGAATAGCTTCGATGATATCGGCCAGCTCTCCTTGATAAGCGAGTCG
ACTGCCCAAAGTGCGTTCCATACATTTTGCAAGCGTTTCGCTTAAGTTCT
GGCGAGCTTGCAGATTCTGGAGAGAGGGAATAGCTTCGATGATATCGGCC
AGCTCTCCTTGATAAGCGAGTCGACTGCCCAAAGTGCGTTCCATACATTT
TGCAAGCGTTTCGCTTAA
back to top