mRNA_H-paniculata_contig861.16573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig861.16573.1
Unique NamemRNA_H-paniculata_contig861.16573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig861.16573.1 vs. uniprot
Match: A0A6H5JSP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSP6_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 9.340e-54
Identity = 114/237 (48.10%), Postives = 155/237 (65.40%), Query Frame = 1 
Query:  439 PRSIPLLLSHSIHGLSVGLPARVRTISSVLHGDGELCTDVSRRTHVRRRHALRAMGGSIRWFGGQSVVPWELALFLVEEMKGEGISPGAVVYTAALAECKWAGETRHVEYLLSQLRSAGLDIAPAIPGALNDEPPPSQIPAIY-----------------------KSTSSAGSEAQLTGAGRTAEAALSTVEGMWAAAAGGDSKYEPTPATSRAALNACAAGGQWERALALVRDAA 1080
            PR+ P++  HS        P +  + +++ H   +    ++R   + +R +  ++G SIR FGGQSVVPWELALFLV+EMKGE + PGAVVYTAALAEC+WAGE RHV+Y+L ++++ GL+I P IPGA ND+PPPSQ P ++                       +  ++A    ++  A RTAEAAL+TVE MWA A     +++P+PAT RAAL+ACAAGGQWERAL+LVRDAA
Sbjct:   88 PRNRPVVCDHS--------PGQ--SPAALAHSFYDAAAGMTRSGRIGQRCSTASVG-SIRKFGGQSVVPWELALFLVDEMKGEMVQPGAVVYTAALAECRWAGEQRHVDYILKEMKAEGLNIVPGIPGATNDDPPPSQSPPLFGKLPEPPPNSATPQHQPGTGGPDQHAAAAAVVEKMQEAARTAEAALATVETMWARA-----QHDPSPATCRAALDACAAGGQWERALSLVRDAA 308
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BLAST of mRNA_H-paniculata_contig861.16573.1 vs. uniprot
Match: D7FTJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ1_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.010e-43
Identity = 99/210 (47.14%), Postives = 129/210 (61.43%), Query Frame = 1 
Query:  517 SSVLHGDGELCTDVSRRTHVRRRHALRAMGGSIRWFGGQSVVPWELALFLVEEMKGEGISPGAVVYTAALAECKWAGETRHVEYLLSQLRSAGLDIAPAIPGALNDEPPPSQIPAIYKSTSSAGSEA----------------------QLTGAGRTAEAALSTVEGMWAAAAGGDSKYEPTPATSRAALNACAAGGQWERALALVRDAA 1080
            +++ H   +    ++R   + RR ++ ++  SIR FGGQSVVPWELALFLVEEMKGE + PGAVVYTAALAEC+WAGE RHV+Y+L ++++ GL+I P IPGA +                                            ++  A R AEAAL+TVE MWA A     +++P+PAT RAAL+ACAAGGQWERAL+LVRDAA
Sbjct:   11 AALAHSFYDAAAGMTRSGRIGRRCSIASVD-SIRSFGGQSVVPWELALFLVEEMKGEMVQPGAVVYTAALAECRWAGEQRHVDYILEEMKAEGLNIVPGIPGATDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKMQEAARAAEAALATVETMWARA-----QHDPSPATCRAALDACAAGGQWERALSLVRDAA 214
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig861.16573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSP6_9PHAE9.340e-5448.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTJ1_ECTSI4.010e-4347.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig861contigH-paniculata_contig861:22665..26895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_001580.1
Exons3
Model size1655
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig861.16573.1prot_H-paniculata_contig861.16573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig861 23108..26631 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.6142504-UTR-H-paniculata_contig861:22664..231071622931082.6142504-UTR-H-paniculata_contig861:22664..23107Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig861 22665..23107 -
1691481581.7100759-UTR-H-paniculata_contig861:22664..231071691481581.7100759-UTR-H-paniculata_contig861:22664..23107Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig861 22665..23107 -
1622931082.6766279-UTR-H-paniculata_contig861:26631..268951622931082.6766279-UTR-H-paniculata_contig861:26631..26895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig861 26632..26895 -
1691481581.7529109-UTR-H-paniculata_contig861:26631..268951691481581.7529109-UTR-H-paniculata_contig861:26631..26895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig861 26632..26895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931082.6304624-CDS-H-paniculata_contig861:23107..235081622931082.6304624-CDS-H-paniculata_contig861:23107..23508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 23108..23508 -
1691481581.7224107-CDS-H-paniculata_contig861:23107..235081691481581.7224107-CDS-H-paniculata_contig861:23107..23508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 23108..23508 -
1622931082.6440663-CDS-H-paniculata_contig861:23992..241281622931082.6440663-CDS-H-paniculata_contig861:23992..24128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 23993..24128 -
1691481581.7311099-CDS-H-paniculata_contig861:23992..241281691481581.7311099-CDS-H-paniculata_contig861:23992..24128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 23993..24128 -
1622931082.656138-CDS-H-paniculata_contig861:26220..266311622931082.656138-CDS-H-paniculata_contig861:26220..26631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 26221..26631 -
1691481581.7414844-CDS-H-paniculata_contig861:26220..266311691481581.7414844-CDS-H-paniculata_contig861:26220..26631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig861 26221..26631 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig861.16573.1

>prot_H-paniculata_contig861.16573.1 ID=prot_H-paniculata_contig861.16573.1|Name=mRNA_H-paniculata_contig861.16573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
MCTTAANFPRTLLGRLQLLPRRLSSSTTTLTNNLNVNTKCTRPSFFPKQA
LVSGQSPRPRSIPLLLSHSIHGLSVGLPARVRTISSVLHGDGELCTDVSR
RTHVRRRHALRAMGGSIRWFGGQSVVPWELALFLVEEMKGEGISPGAVVY
TAALAECKWAGETRHVEYLLSQLRSAGLDIAPAIPGALNDEPPPSQIPAI
YKSTSSAGSEAQLTGAGRTAEAALSTVEGMWAAAAGGDSKYEPTPATSRA
ALNACAAGGQWERALALVRDAALDDDDGSLNDRSRVAEQVEALALGGQWL
EALALVKGKGDLTNS*
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mRNA from alignment at H-paniculata_contig861:22665..26895-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig861.16573.1 ID=mRNA_H-paniculata_contig861.16573.1|Name=mRNA_H-paniculata_contig861.16573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4231bp|location=Sequence derived from alignment at H-paniculata_contig861:22665..26895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAACAAATGCTCTTCACTCATCTGGTAGTGGTTACACCTGGAAGAAAGC
AATTGCAGGATATGCTCCCTACTTTTAAATGAAGAACCACGCGTCTCGGG
TAGGGACACCCCGGCGAAGGGCTGTGATCCTCCTCCGTGGGACATAACTT
AGATACTAATTTGATCTAAGGGTCTGCCGTATTATGTGTCAGACTGTCAG
CCAGGCCTAAGAGTACACCCAAACTGTAGAGTAGGCTATTCATCGTATTC
AGCAAAAAGCTGTAATGTGTACCACGGCGGCCAATTTTCCCCGGACTCTT
TTGGGGCGGCTGCAGTTACTTCCGCGACGCCTGAGCAGCAGCACCACAAC
GTTAACCAATAACCTCAACGTCAACACAAAGTGCACTCGCCCTTCCTTCT
TCCCCAAGCAAGCACTTGTGTCGGGACAGTCACCTCGCCCCCGATCTATC
CCGCTACTACTATCCCACAGCATACATGGATTATCTGTGGGTTTGCCTGC
AAGGGTACGAACAATTTCTTCAGTGCTTCATGGGGACGGGGAGCTATGTA
CTGATGTATCGAGGAGGACACATGTTCGACGTAGACACGCTCTTCGCGCG
ATGGGCGGCAGCATTCGGTGGTTCGGTGGGCAGAGTGTTGTGCCCTGGGA
GCTGGCGCTCTTTCTCGTAGAGGAGGTATGACGGTCTTGTTTTTTCCTTA
GCGTTTCATCGGTGCGACATTCGACCTAACAAATCTAATCGCACAGTATT
CGCCCTGGGCTCATTTGAGGGACTCAGGGTCTTGGCTCATTTTAGGCCCA
AGACCCGAAGTCTTCGGACGAAGGATCCTCATTTAGGTAGCCAGAACCAA
ATCCTCACCCTCTAATCCCGAATCATCAACTTCTGGGTCCATTACGTTGT
GGCCGAAACTGTCAATACTTTTTGGAGGGGTGGAAGGATATAGAGATTCA
TGGCTTGACGCTAATCGCGTTGCTTTTTTTCCGTTCTCCTAGAGGCAATC
CTCTTGCGGGGTCGACCGTGGAAATACACGTGCTCTGTGTTCCGCCCGCA
CTTGACCCATATTCATGTTTTTGCAATTCTCTTCGTACATTCGTCGGATA
ATGACCAATGTCGCGTTTTAATGTGTTCATTTCCCTGGGTCCGGGATCTT
CACCATATTTCAGCAGATCGAATTACATCGTCCGGTAAATGTATGCCACT
ACGAAGATGGTTGAGATGTGTCCCCTAGATTAAGGGCAAATAACTGCTGG
AGTTTGTGGGCAGCATGAGCTCGTTTGGAAGAAGTTAAGCCGAAGATGTA
TCTGGTGCAGTGAATACCACCCACCCTCTCCCCTCGCCAAACCTGTATCG
GCACTATGGTGTTGCGAGAGCTTACCGCGCTGACGCTACGGCACGAACTA
TAGATATGAATAGCTAATTATGTGCTCGAGGTCATGAGCTTCACGTTGCT
ATAGGTTTCACGCAATTTGATTCGACGAGCTAAATTAACGACCCGATAGA
AATTCGAACAAAATTAAATGAAGAGAGCTTGTTTTCGCCACGTACTACTC
GGCTCTAGTATTGATGGTACCGAACACGAATGGCAGTATGGTGTTCAGAA
AGTCTACCGCGCTGACGTACCTGGCGCTACGGCGCGAACAATAGAGCTAA
CCTGCTGATCATGTGTTTAACATTGTGAACTTCATGTTGCAAAAGGTTTC
ATGCAATTTGATGGAACGACTGAAATTAACGACTTCATAGAAATCTGCTA
ACATTTGAAAAATAATTGCTCCCGTCAGATTTAACGTATCTTTCGTGCTG
AGTGTGCCGAGCACGACTGCTTATATACTATACTGTCAGTAATTACAAAA
ACCGAGGCTGTCGCGTGAAAAACAACTATAGAACAAACACACATTAAGGG
AGCGAGTAACTTCTGACCGAGTGTTACCTGGAAGAAACAGCACAAATTTT
GCTCGAGGCCCAAGGAATTTGAAATTGCCGGCTGCAGACACCCGCGGCGT
AATGACCTTGTTTATTATGTTGAATTCAGTATCGATTTCGCCCGTCGCTT
TTGGTTCACAATTTTTCTACAGACAGAGCACGAACTGCAAGAGTTCCAAG
AGCTCAGTCAAGCTTTCACGTACAGCTCTTTGCTGGTAGAAGCACAAAGT
GATCTGTGGTACGATCTAAATTATCGTTCGACCTAAACCTGATGAGTGTT
TCGTCTCAAACTTGTTCTTTTTCGGTCTTTAGCTGCCAAATTTTGGGCGC
AAATGGACAATAGTGTGACGTATGTTCCTGTGTTTACTGGCGTTGCATGC
CCATCGGTGTAGAGTGGGATATCCGCGATCGTCCCTTCTGGACGAAAGGT
TGGAAAAGGGCCCAACGCTTTGTAAGATTGGCGTATATTAGTTATCTCTT
TTTTCTCGATGCACATGTGCCGTTTGTGAGTTTGAATCGATGGGTTTGGC
CCAGAATTTTTGTAAGAGGTAGCTCTACAGAATCTATATCGCTATGAACA
AGGCTATTGTGTGGTCCCTGCTTCTCCGGCCTCACAGACCCTGCTGTGCA
TCATTTCTTAGGGGGTGAAAACAAACCAGAAACGCTAAAGCCCCAAGACG
TGCTACAATACGTGCTGTCAGTACAATGTACAAATCCGAAACCGAAAAAC
ATGTACGTGTTATATCTCTCGATGCCGGTAACGATGAAGACTTTGTGTAC
CTACGGTCTATCCGTCTGGTCCTCCGTCTGGCTGTTGTATTTTTCCTCCT
TCGTGTTGAACTTTTAGATGAAAGGAGAGGGCATTAGCCCCGGAGCGGTG
GTTTACACAGCCGCGTTGGCAGAGTGCAAGTGGGCAGGAGAAACGCGACA
CGTGGAGTACCTCTTGTCGCAATTGCGATCCGCGGGACTGGACATTGCGC
CAGGTACGCAACCCGAAGTCCCAGGGTAAATGTTGTCTAGAATCTTGGCG
GTTCTCGGTGCCATACAGTGGCAAGGCTCTCGTCAGTGAAAGTAAGGCTC
AGGTAGAAAAAGACAATTGGACTGCAGAAGCATGACTGTACGGTTTGACT
TACAAGACGGTAGAATTAACTTGAGATGCAGACCACCCGCACACCACCTC
GCCTCCGGGCGAGCATGTGGCATTGTCATACCTTCAGCTTCCGCCGTTTG
TCGGTCAGCTTGAATTTTTTCTTCATTATATTTCCAGGAAAGAGCGCTTG
TTTGCGCGAATCTGAGGTTAATATGGGACAAGGGAGTAGACGCTCTTGGC
CCCGTTTACAGGATTTTTAAGATAACCAATTCGCGTGCTCAACATTTTCT
GTGCATTCAAATCTCCCCTGTCCCCCGTCCCGGATGCCTGTGCCTATCGC
CCGTCGTCTGCTGCTGGCCTCGCTCACCCGGTCCAAGCCATTCCTGGAGC
ACTAAACGATGAGCCACCCCCCTCACAAATTCCGGCGATTTATAAGAGCA
CGTCCTCCGCGGGGTCGGAGGCTCAACTAACAGGGGCCGGTCGTACTGCC
GAGGCCGCTCTCTCCACCGTGGAGGGCATGTGGGCAGCAGCGGCCGGGGG
CGATAGCAAGTATGAGCCAACACCGGCGACTAGTCGGGCGGCGTTGAATG
CCTGTGCCGCAGGGGGGCAGTGGGAACGCGCTCTTGCTCTGGTGCGAGAC
GCGGCGTTAGATGATGACGACGGCAGCTTGAATGATCGCAGTAGAGTCGC
TGAACAAGTTGAAGCATTGGCCCTAGGGGGACAATGGCTCGAGGCGTTGG
CTTTAGTGAAGGGGAAGGGAGACTTGACAAATAGTTAACTACGAGTAATC
CCCGTTTTCAAGGAGCGTGGAAGAGGGAGAGTTGAAAGAGTCAGGGTTCT
AAAATGTAGGGTTAATATGTGGTACGTTTTCTTGTACTATGTAGTTTGAT
GTGTACCTCGGGAGGGCCTCGTGCACTATAGTTTTCGAGTCCGAGGGCAA
GCAGAACCACTGGTGGTGTTCGGATGAAAGGGGTTTCGCTATTATTGGTA
CAGAGAAAGGTTGTTCGGGCTGTGTATCGGTACCGATACGAAAAAGATAT
ATCGTATATTGGTCCTATATATATATATCGATCAGTCATCATCCCGATTT
ATCGATACATTTCCCAGATAGTATAGTCATCACCCACTGAATATGAAGAT
GTTGTCATGCTCCAAGAAGTCATATACGGAATTTCTGATTGCTAAATTCA
AACATATTGAGTCCTTCAGCTAGACAGTGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig861:22665..26895-

>mRNA_H-paniculata_contig861.16573.1 ID=mRNA_H-paniculata_contig861.16573.1|Name=mRNA_H-paniculata_contig861.16573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig861:22665..26895- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTACCACGGCGGCCAATTTTCCCCGGACTCTTTTGGGGCGGCTGCA
GTTACTTCCGCGACGCCTGAGCAGCAGCACCACAACGTTAACCAATAACC
TCAACGTCAACACAAAGTGCACTCGCCCTTCCTTCTTCCCCAAGCAAGCA
CTTGTGTCGGGACAGTCACCTCGCCCCCGATCTATCCCGCTACTACTATC
CCACAGCATACATGGATTATCTGTGGGTTTGCCTGCAAGGGTACGAACAA
TTTCTTCAGTGCTTCATGGGGACGGGGAGCTATGTACTGATGTATCGAGG
AGGACACATGTTCGACGTAGACACGCTCTTCGCGCGATGGGCGGCAGCAT
TCGGTGGTTCGGTGGGCAGAGTGTTGTGCCCTGGGAGCTGGCGCTCTTTC
TCGTAGAGGAGATGTGTACCACGGCGGCCAATTTTCCCCGGACTCTTTTG
GGGCGGCTGCAGTTACTTCCGCGACGCCTGAGCAGCAGCACCACAACGTT
AACCAATAACCTCAACGTCAACACAAAGTGCACTCGCCCTTCCTTCTTCC
CCAAGCAAGCACTTGTGTCGGGACAGTCACCTCGCCCCCGATCTATCCCG
CTACTACTATCCCACAGCATACATGGATTATCTGTGGGTTTGCCTGCAAG
GGTACGAACAATTTCTTCAGTGCTTCATGGGGACGGGGAGCTATGTACTG
ATGTATCGAGGAGGACACATGTTCGACGTAGACACGCTCTTCGCGCGATG
GGCGGCAGCATTCGGTGGTTCGGTGGGCAGAGTGTTGTGCCCTGGGAGCT
GGCGCTCTTTCTCGTAGAGGAGATGAAAGGAGAGGGCATTAGCCCCGGAG
CGGTGGTTTACACAGCCGCGTTGGCAGAGTGCAAGTGGGCAGGAGAAACG
CGACACGTGGAGTACCTCTTGTCGCAATTGCGATCCGCGGGACTGGACAT
TGCGCCAGATGAAAGGAGAGGGCATTAGCCCCGGAGCGGTGGTTTACACA
GCCGCGTTGGCAGAGTGCAAGTGGGCAGGAGAAACGCGACACGTGGAGTA
CCTCTTGTCGCAATTGCGATCCGCGGGACTGGACATTGCGCCAGCCATTC
CTGGAGCACTAAACGATGAGCCACCCCCCTCACAAATTCCGGCGATTTAT
AAGAGCACGTCCTCCGCGGGGTCGGAGGCTCAACTAACAGGGGCCGGTCG
TACTGCCGAGGCCGCTCTCTCCACCGTGGAGGGCATGTGGGCAGCAGCGG
CCGGGGGCGATAGCAAGTATGAGCCAACACCGGCGACTAGTCGGGCGGCG
TTGAATGCCTGTGCCGCAGGGGGGCAGTGGGAACGCGCTCTTGCTCTGGT
GCGAGACGCGGCGTTAGATGATGACGACGGCAGCTTGAATGATCGCAGTA
GAGTCGCTGAACAAGTTGAAGCATTGGCCCTAGGGGGACAATGGCTCGAG
GCGTTGGCTTTAGTGAAGGGGAAGGGAGACTTGACAAATAGTTAACCATT
CCTGGAGCACTAAACGATGAGCCACCCCCCTCACAAATTCCGGCGATTTA
TAAGAGCACGTCCTCCGCGGGGTCGGAGGCTCAACTAACAGGGGCCGGTC
GTACTGCCGAGGCCGCTCTCTCCACCGTGGAGGGCATGTGGGCAGCAGCG
GCCGGGGGCGATAGCAAGTATGAGCCAACACCGGCGACTAGTCGGGCGGC
GTTGAATGCCTGTGCCGCAGGGGGGCAGTGGGAACGCGCTCTTGCTCTGG
TGCGAGACGCGGCGTTAGATGATGACGACGGCAGCTTGAATGATCGCAGT
AGAGTCGCTGAACAAGTTGAAGCATTGGCCCTAGGGGGACAATGGCTCGA
GGCGTTGGCTTTAGTGAAGGGGAAGGGAGACTTGACAAATAGTTAA
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