mRNA_H-paniculata_contig8483.16466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8483.16466.1
Unique NamemRNA_H-paniculata_contig8483.16466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: D8LH58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH58_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 4.220e-47
Identity = 147/481 (30.56%), Postives = 231/481 (48.02%), Query Frame = 3 
Query:   39 MGGLTEERYVNPLTHGILMHAFKWAMDGVSDYLPPEQQGWLRREPGGVRGDVKQQTLDVQRKRMANIVLCSASENRKSKEIASFLDHCQDE-SGTGSVMSLVLLDGLWSLPAFIRPVVGDQVVVEVYDALRRYGVLTKFGALKPPATQIP---TVPE--EKYTDS--------QRESRSSVASSVIWVYRVWSTVFVLAATVLGFSGLGIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHGKSLGSEPFVSCIDPELSMMERPQWPQRKAWRELSGDEMGQVLWRIVQDDWEPWTETPPVEVGLNSIASKSGSASRRETGRAYGGNQVGEGKRRTVSYRFALLAMAGAAAETIVTGFEIGGRGDRESLRITLLRVWPTVSGADLTNTETWALSEDLRILTAERKALNILAKNMLETKQIGCLVVELERALAELSTECS 1439
            MGG   +  VNP+   +++ A K    G + YL P  +         +   V+     +      + VL  A +   ++ I   LD C+++  G G+ ++L  LD +W LPA IRP +G   ++ VY+ALRR+GV T+FG +K P T++    TVPE  E   DS        + ++RS    ++I  + V +  +V++         G D  V      +L  +  +   L  AL++E    + P L +  + HE+GH   +YL G P++  T+GG  S++HG  +G  P  + I+ ELS   R   P+     EL      +   R+      PW E P     L  +   S     ++    +      EG R  +S R AL +M G A E +  GF++GG  D  ++R     +WP +S  DL  TE WA  E+L+I  AER A+ +LAKNM E + IG L+++L+R+L     E S
Sbjct:   70 MGG---DGRVNPVYRQMVVLAVKSGAAGAARYLNPSGESSTSTGKRALNKAVQAHVGQLM-----DAVLSPAPDEENAEAIKRILDRCEEQHKGAGATLALGYLDTVWWLPAPIRPAIGALAILAVYEALRRFGVFTRFGMVKLPDTELAPTETVPEPVEGMEDSPIFKAAQFETDARSLSYYTLIGAFLVSTMSYVIS---------GGDGQVAWSGMLLLTFVAFEREVLHSALYSEAIIRVQPMLTQLTSAHEAGHVAAAYLTGLPVATYTLGGLGSLQHGDEVGCGPSCNIINAELSTA-RIWLPE-----ELLTGPASEPEPRLEARMTYPW-EDPARLQNLVELDFSSSEIPHKDRVAPFDT----EG-RHAMSNRMALTSMGGIAGEMMANGFDVGGGADYFNMRRRFKGLWPYMSQDDLRRTEKWAFLENLKIFKAERTAMELLAKNMRERRPIGRLMLDLDRSLTSTEFELS 521
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: D7FHD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.110e-11
Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = 3 
Query:  402 VVEVYDALRRYGVLTKFGAL---KPPATQIPTVPEEKYTDSQRESRSSVASSVIWVYRVWSTVFVLAATVLGFSGLGIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVC-----TIGGWASIRHGKSLGSEPFVS 878
            +   Y+AL+  G+L  FG++   K P++Q   V  EK        + ++A        + + V V  A  L    +G+D P+  V  + LG +  D + L+ AL   L   IVPA RER   HE+GHFL++YLLGCP+  C      +G   +   G ++ ++P +S
Sbjct:  172 LTNTYNALKAAGLLRGFGSIDFSKGPSSQSRDVSAEKLLSLSGVEKQNLAPGRPTGSWLAAGVGVFGAEYLAGILMGLD-PLQTVIPWTLGLIFADRLLLNGALSESLTRLIVPAYRERIIRHEAGHFLVAYLLGCPVQACLLDPFVLGSGLTGAQGGTVFADPVLS 337
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A7S0HJE3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HJE3_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 1.660e-8
Identity = 53/186 (28.49%), Postives = 81/186 (43.55%), Query Frame = 3 
Query:  387 VGDQVVVEVYDALRRYGVLTKFG----ALKPPATQIPTVPEEKYTDSQRESRSSVASSVIWVYRVWSTVFVLAATVLGFS-GLGIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHGKSLGSEPFVSCIDPEL-SMMERPQWPQ 926
            V  Q++V  Y AL + GVL  +G    AL  P  ++ T  E++       S  +          V   +  LA T    S G  +  P         G +LLD + L  A    +   + PA       HE+GHFL++YLLGCP+    + G+ ++R G+           DPEL + M+R + P+
Sbjct:  144 VQQQLLVRCYGALSKRGVLRGYGSADGALPAPTPKVVTTDEQQRLTGLPTSAFAPGKGNGGGTLVAGALSALALTSAASSFGWDLQAPFQAAG----GALLLDRLLLRGAAGEAVTKLVQPAYARTVLQHEAGHFLVAYLLGCPVEAVLLDGFQAMRDGRFAAGTAGTVFFDPELGAAMKRGELPR 325
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A448ZEE6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEE6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.020e-8
Identity = 79/368 (21.47%), Postives = 135/368 (36.68%), Query Frame = 3 
Query:  366 PAFIRPVVGDQVVVEVYDALRRYGVLTKFGALKPPATQIPTVPEEKYTDSQRESRSSVASSVIW------VYRVWSTVFVLAATVLGFSGLGIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHGK--SLGSEPFVSCIDPELSMMERPQWPQRKAWRELSGDEMGQVLWRIVQDDWEPWTETPPVEVGLNSIASKSGSASRRETGRAYGGNQVGEGKRRTVSYRFALLAMAGAAAETIVTGFEIGGRGDRESLRITL--LRVWPTVSGADLTNTET------WALSEDLRILTAERKALNILAKNMLETKQIGCLVVELERALAE 1421
            PAF +     + + E+Y  L+  G L  FGA+      +P            E+ +S++ S +       +      V +L +   GF GL ++     V +   G  L D V L+ A+       + P  + +   HE+GHFL SY+LGCP+    +  W ++   +   LG     S  DP+LS                                          ++  + I                          R+   R++++ MAG AAE ++ G   GG GD ++L   L  L   P++S A + N +T      W   + + IL   ++  + L   +     +G  +  +E A  E
Sbjct:  137 PAFSQ---SRKEMAEMYSLLKEQGHLRLFGAIT--KENMPASGSHNVRPKMLEAITSLSMSSLTPQPSNTLLYAGMGVALLESIASGFLGLDLN----AVFFATFGVALCDQVFLNGAVSETCVKMLSPETQPKITRHEAGHFLCSYILGCPVEGYVLSSWGALEDPRFRGLGVSAGTSFFDPDLSS-----------------------------------------QIENSKIT-------------------------RSAIDRYSIIVMAGIAAEAVMYGKADGGAGDEQALIAFLSNLNGGPSLSSAPVWNEQTIRNQARWGALQSVLILREYKECYDALVDTLERNGSLGDCIYAIENAARE 429
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A7S2WUW6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUW6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.910e-6
Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 3 
Query:  621 GIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHGKSLGSEPFVSCIDPEL 896
            G+D PV  V    +G  LLD +    ALF      + P  RE+   HE+ HFL++YLLGCP+  C I  + ++   +  G    +   DPE 
Sbjct:  247 GLD-PVNTVFPATIGFFLLDRLVFQGALFETAYRAVAPQYREKVIRHEAAHFLVAYLLGCPVESCIISAFDAMSESRFDGQAGTIF-FDPEF 336
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: M2Y1Q2_GALSU (Uncharacterized protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y1Q2_GALSU)

HSP 1 Score: 60.5 bits (145), Expect = 4.160e-6
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 3 
Query:  672 LLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHG--KSLGSEPFVSCIDPELS 899
            L D + L  A+F EL   + P  +++   HE+GHFL+SYLLGCP+    +  W S+  G     G+  F   ++ ELS
Sbjct:  219 LCDQIALQGAIFEELYKNLFPIYKKKVLKHEAGHFLVSYLLGCPVRGIVLSAWESLSLGIPGQAGTLFFDRKLESELS 296
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A7S0HPT9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HPT9_9CRYP)

HSP 1 Score: 60.5 bits (145), Expect = 5.260e-6
Identity = 45/163 (27.61%), Postives = 76/163 (46.63%), Query Frame = 3 
Query:  393 DQVVVEV-YDALRRYGVLTKFGALKPPATQIPTVPEEKYTDSQRESRSSVASSVI-------WVYR---VWSTVFVLAATVLGFSGLGIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHG 848
             QV+  V Y  L+  G+L  FG ++     +P   +E   ++ +E+ +   S++        W+     + +  ++LAA        G+D P+  V  +     +LD V    A F  +   + P  +E+   HE+GHFLL+YLLGCPI    +  W + R G
Sbjct:   74 QQVLTSVAYTGLKNRGLLRGFGCVQASPQYLPYPAKEIDVEALQETIALPMSALTPKNSQYGWLAAGLGLCTVEYLLAANA------GLD-PLRTVIPFTAFLFVLDRVLTSGAAFESVYRFLFPKYKEKVIKHEAGHFLLAYLLGCPIQGFFLSAWDATRAG 229
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A7S0J6Y4_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6Y4_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 7.900e-6
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 3 
Query:  660 LGTMLLDSVCLDDALFAEL-QHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHGKSLGSEPFVSCIDPELSMMER 911
            LG +LL    L   +  E+    +VP+L+     HE+GHFLL+YLLGCPI  C +   A+ R  +  G+   V   DP+LS   R
Sbjct:  182 LGALLLADNALAGGVGIEVVTRTLVPSLQRTVTQHEAGHFLLAYLLGCPIEACLLDPLAAARDSRVPGAAGTVF-FDPQLSSAMR 265
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A1E7FLH9_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLH9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.040e-6
Identity = 27/82 (32.93%), Postives = 42/82 (51.22%), Query Frame = 3 
Query:  660 LGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHGK--SLGSEPFVSCIDPELS 899
            L   L D + L+ AL   +   + PA +++   HE+GHFL SY+LGCP+    +  W +++  +    G     S  DP LS
Sbjct:   14 LSAALCDQLVLNGALSESVVKLVSPATQQKITRHEAGHFLCSYILGCPVEGYVLSAWGALKDPRFRGRGVSAGTSFFDPNLS 95
[Close]
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Match: A0A7S4NSX5_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NSX5_GUITH)

HSP 1 Score: 59.7 bits (143), Expect = 9.890e-6
Identity = 44/157 (28.03%), Postives = 72/157 (45.86%), Query Frame = 3 
Query:  393 DQVVVEV-YDALRRYGVLTKFGALKPPATQIPTVPEEKYTDSQRESRSSVASSVIW--VYRVWSTVFVLAATVLGFSGL--GIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHESGHFLLSYLLGCPISVCTIGGWASIRHG 848
             QV+  V Y  L+  G+L  FG ++     +P   +E   ++ +E+ +   S++        W    +   TV  F  L  G+D P+  V  +     ++D +    A F      + P  +E+   HE+GHFLL+YLLGCPI    +  W + R G
Sbjct:  123 QQVLTSVAYTGLKNRGLLRGFGCIQASPQYLPYASKEIDVEALQETIALPMSALTPKNAQYGWLAAGLGLCTVEYFLALNAGLD-PLRTVIPFTAFLFVVDRLLTSGAAFESAYRFLFPKYKEKVIKHEAGHFLLAYLLGCPIQGFFLSAWDATRAG 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8483.16466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LH58_ECTSI4.220e-4730.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHD1_ECTSI4.110e-1131.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0HJE3_9EUKA1.660e-828.49Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A448ZEE6_9STRA2.020e-821.47Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2WUW6_9STRA1.910e-634.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
M2Y1Q2_GALSU4.160e-637.18Uncharacterized protein n=2 Tax=Galdieria sulphura... [more]
A0A7S0HPT9_9CRYP5.260e-627.61Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0J6Y4_9EUKA7.900e-638.82Hypothetical protein (Fragment) n=2 Tax=Calcidiscu... [more]
A0A1E7FLH9_9STRA9.040e-632.93Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S4NSX5_GUITH9.890e-628.03Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8483contigH-paniculata_contig8483:292..4232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue3.6e-13
Seed eggNOG ortholog2880.D7FHD1
Hectar predicted targeting categoryother localisation
EggNOG OGs28IYK@1,2QRAA@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000640.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1664
Cds size1425
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.7193832-UTR-H-paniculata_contig8483:291..3081622931064.7193832-UTR-H-paniculata_contig8483:291..308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8483 292..308 +
1691481573.7403336-UTR-H-paniculata_contig8483:291..3081691481573.7403336-UTR-H-paniculata_contig8483:291..308Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8483 292..308 +
1622931064.8375807-UTR-H-paniculata_contig8483:4010..42321622931064.8375807-UTR-H-paniculata_contig8483:4010..4232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8483 4011..4232 +
1691481573.8240476-UTR-H-paniculata_contig8483:4010..42321691481573.8240476-UTR-H-paniculata_contig8483:4010..4232Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8483 4011..4232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.7332072-CDS-H-paniculata_contig8483:308..4911622931064.7332072-CDS-H-paniculata_contig8483:308..491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 309..491 +
1691481573.7547014-CDS-H-paniculata_contig8483:308..4911691481573.7547014-CDS-H-paniculata_contig8483:308..491Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 309..491 +
1622931064.7469218-CDS-H-paniculata_contig8483:856..11041622931064.7469218-CDS-H-paniculata_contig8483:856..1104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 857..1104 +
1691481573.766046-CDS-H-paniculata_contig8483:856..11041691481573.766046-CDS-H-paniculata_contig8483:856..1104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 857..1104 +
1622931064.7653155-CDS-H-paniculata_contig8483:1631..17461622931064.7653155-CDS-H-paniculata_contig8483:1631..1746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 1632..1746 +
1691481573.7764997-CDS-H-paniculata_contig8483:1631..17461691481573.7764997-CDS-H-paniculata_contig8483:1631..1746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 1632..1746 +
1622931064.7802763-CDS-H-paniculata_contig8483:2113..22331622931064.7802763-CDS-H-paniculata_contig8483:2113..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 2114..2233 +
1691481573.7876494-CDS-H-paniculata_contig8483:2113..22331691481573.7876494-CDS-H-paniculata_contig8483:2113..2233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 2114..2233 +
1622931064.7932136-CDS-H-paniculata_contig8483:2630..27691622931064.7932136-CDS-H-paniculata_contig8483:2630..2769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 2631..2769 +
1691481573.7991524-CDS-H-paniculata_contig8483:2630..27691691481573.7991524-CDS-H-paniculata_contig8483:2630..2769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 2631..2769 +
1622931064.8099613-CDS-H-paniculata_contig8483:3179..35591622931064.8099613-CDS-H-paniculata_contig8483:3179..3559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 3180..3559 +
1691481573.8078842-CDS-H-paniculata_contig8483:3179..35591691481573.8078842-CDS-H-paniculata_contig8483:3179..3559Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 3180..3559 +
1622931064.822729-CDS-H-paniculata_contig8483:3770..40101622931064.822729-CDS-H-paniculata_contig8483:3770..4010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 3771..4010 +
1691481573.8159237-CDS-H-paniculata_contig8483:3770..40101691481573.8159237-CDS-H-paniculata_contig8483:3770..4010Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8483 3771..4010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8483.16466.1prot_H-paniculata_contig8483.16466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8483 309..4010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8483.16466.1

>prot_H-paniculata_contig8483.16466.1 ID=prot_H-paniculata_contig8483.16466.1|Name=mRNA_H-paniculata_contig8483.16466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=475bp
MSSDTVYMGGLTEERYVNPLTHGILMHAFKWAMDGVSDYLPPEQQGWLRR
EPGGVRGDVKQQTLDVQRKRMANIVLCSASENRKSKEIASFLDHCQDESG
TGSVMSLVLLDGLWSLPAFIRPVVGDQVVVEVYDALRRYGVLTKFGALKP
PATQIPTVPEEKYTDSQRESRSSVASSVIWVYRVWSTVFVLAATVLGFSG
LGIDLPVTGVCWYVLGTMLLDSVCLDDALFAELQHCIVPALRERAAYHES
GHFLLSYLLGCPISVCTIGGWASIRHGKSLGSEPFVSCIDPELSMMERPQ
WPQRKAWRELSGDEMGQVLWRIVQDDWEPWTETPPVEVGLNSIASKSGSA
SRRETGRAYGGNQVGEGKRRTVSYRFALLAMAGAAAETIVTGFEIGGRGD
RESLRITLLRVWPTVSGADLTNTETWALSEDLRILTAERKALNILAKNML
ETKQIGCLVVELERALAELSTECS*
back to top

mRNA from alignment at H-paniculata_contig8483:292..4232+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8483.16466.1 ID=mRNA_H-paniculata_contig8483.16466.1|Name=mRNA_H-paniculata_contig8483.16466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3941bp|location=Sequence derived from alignment at H-paniculata_contig8483:292..4232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAGGAGTCGCGTCGATGTCTTCTGACACTGTATACATGGGTGGGCTA
ACCGAAGAGAGGTACGTAAACCCGTTAACTCACGGCATTCTGATGCATGC
ATTCAAGTGGGCTATGGATGGTGTGAGTGACTACTTGCCCCCGGAGCAGC
AAGGCTGGCTTAGACGAGAACCTGGCGGAGTGCGTGGCGATGTGAAGCAG
GTCAGGCTCCAGACAAAAAGACTTGATGTTTGTACCCAACCGTCTGATTG
CGCAGCTCTTAGTAGCATCGAAAGGTGTTGAGCACTCACCAGCCTTGAAG
AGATTGTACGGTACAGACTTTAGGAACTAGGCTTCTTAAAATACGGCCGG
ATGTGATGCGGGGGGCAGGAAGCTGCTCCGTGTAAATACCTCCTTTGTTG
CTCGCAGAGCGTGGTACGTAACCTCGCTTGAAATCGTGTATGATGCTTTT
GCCAAGTTGAAAAAAAATCGTCTCGCAGTATCACTTTCGTGTTCTCCTTA
TGCATTTAGTCATCTCCCGGTGTACCCACGTACCTCCCTGTCCGACTTGC
TGCGTTGGTGCGTAGCAAACACTCGATGTCCAGCGAAAACGTATGGCGAA
CATCGTATTGTGCTCGGCCTCGGAGAACAGGAAGTCGAAAGAGATTGCCT
CATTCCTGGACCACTGTCAAGATGAATCGGGCACGGGATCAGTCATGTCT
CTAGTCCTTTTGGATGGCCTATGGTCGCTGCCGGCATTCATTCGTCCCGT
GGTGGGCGACCAGGTTGTCGTCGAGGTCTACGATGCCCTCCGACGCTATG
GAGTGTTGACGAAGTACGTATTTTGGTTGAGGACGACTTGCAGGATTGGC
ATAACAAAACTTGCTCGCGCGCAAATGTACCGGGGGTTTGGAGGTATATC
ATTTTTTTGTGAGCAGACTGTATCGTTCACACCTAAGTAGCTTCAAAGCG
TGTTTCGGTTATCTCTTACCCCTCCCCAACTGCTGCGGTGAACACTACAT
TTTTTTATTGGTGTAGTGTTGTCAAACTGTTTCGAGGCGGTCGATTGGAC
GATTGCTCAAGGAGGGTTGCCGTGGCGGAATACCGCGAAAACGTTCGTCG
TATTGTGAGCGGGCGGTGGCTGGTCGTCGTTGAAACCTACGAAGTACACA
CAACCCAGTGCTTAGCTGCAACCCTGCTCCAACCCCTCAACAGAACATGT
GGGAATGACGTGCCTCTCTCTCTACTGAGTGCTTGACGCGAACACAGTAT
CAATGCGATTCTTCGGTCTGCGTCGTGACATCTTCTTACCTACATCACGC
CAACACCCCAACGCATTCCGCGACCTCTGCTTCTGAACAGGTTCGGGGCA
CTGAAGCCTCCGGCGACACAAATACCGACAGTGCCGGAGGAGAAATATAC
CGATAGCCAGCGAGAGAGCCGATCATCTGTCGCTTCTTCTGTGATATGGG
TATATGTGAGCTTCGAACAGGACACGGCTATCATGTCTCGGTCGTTCACG
CTATTCCCATCTGTGTACAACCCGCAACGCAGGCAAGCGAGACATTCGCC
ATTTGATCTGTGCGAAGAAGACCGAAAACACCTGAATGCAGATTGGACAC
GTTTACTTCCCCGGAGGCGACCGTCCTCGTCACGATGCGTATTAACTTGA
CGAGGATGAGACTTCTTCAGTCTCCACGTTGTTCGCAACCCTTGAGCCTA
CTTCTTCCCCGAACATATGTATCTGGCCCGGTGACCCGTCCCACATATCT
ACTCTTGACTGACGAGCGCTGTTCTCGTTTTGTGTCGTCTCCCTTCCGTT
GTCTTGCGCCGCCTTGTGGCAGAGGGTCTGGAGTACAGTATTTGTTCTCG
CGGCGACGGTGTTGGGTTTCTCGGGACTGGGGATCGACCTGCCAGTAACG
GGTGTGTGTTGGTATGTGCTGGGCACCATGTTGTTGGATTCGGTGAGTGT
GGGAGTGATAATCAGGGTGTTAGCCGCTAAGCCGCCCCTCTGCAGGAGTT
GGTTCGATAGATGGATCGCTGCGGTACCAAGACCATTTCCAAGCAGAGCA
TGCAGGGCTAACCTCCATGGCCCAATGGACCCCTTGAGCGTGGCTACTAG
CACAGCGGCAAGGCTTGAGGCACCTCACGCAAATTCCGGTTATACCACAG
CCTGTGTACGAATTTTCAGCTCTCTTATTACTCTAGAATTCACATAACTG
CGACGAGAGACTCTAATATTAAACCAAGCATCTAGCTGAAAGGCACTCTA
TATGGTGCTATACCAGGTCTATGATACCCCGCAAACCGTGATTTTGAAAA
GCTGTCTTGGTGCGTTGTCTCGTTCCTTGACCTCGATAGGTCTGCTTAGA
CGACGCGCTGTTCGCAGAATTGCAGCACTGTATTGTGCCGGCGTTAAGGG
AACGCGCCGCATATCACGAGTCCGGACATTTCCTCTTGTCTTACCTACTG
GGGTGCCCGATTTCCGTTTGCACTATTGGTGAGTCAACGATCAATTGGAC
GTGAGGTTCGCTATAAAGACGAGGAACCTTGACACGGGAGTTGCTTCTGC
GTAAATTTACTGCCTAAACTAGTTATCCCATTCTAGGCATATTGTGCCAC
GCGAGCATTCCTCGGCATATATGTTGTAAACATCATCTGCTATCCTCGTA
CAGGAATGAAGCAGGGTGGTTCGTCTCACGCCTCTATGGTGATCTCGGTC
TATGTCACTCGTCCCACCTTTGTATTACGATATGTATTGCAATACCGGTA
GTACCGAGCGGTAAACGATACAGTGTAAAGCTGTTGTGAGCGTCGCTGTA
GATTGCTTCTCAGCTTCAGTACTGACCCTGTATAGTCTCGTGAAAAATCT
GCACCCTCACCCTCTCACCCTCTTCTCGTGCCCCAAAGGTGGATGGGCCT
CAATACGACATGGTAAGTCACTGGGCAGCGAGCCATTCGTGAGCTGTATC
GACCCCGAGTTGAGTATGATGGAGAGGCCGCAGTGGCCGCAGCGCAAAGC
ATGGAGAGAACTATCGGGAGACGAAATGGGGCAAGTGCTGTGGCGAATTG
TGCAGGATGACTGGGAGCCTTGGACGGAAACCCCACCAGTTGAAGTTGGG
TTGAACTCCATCGCCAGTAAAAGTGGGTCGGCTTCACGGAGGGAGACAGG
GCGAGCGTATGGAGGAAACCAAGTAGGAGAGGGAAAACGACGAACTGTAT
CATACCGATTCGCGTTGCTGGCGATGGCGGGGGCGGCGGCGGAGACCATC
GTCACCGGCTTCGAAATTGTAAGTGTGTAGGTATTGTTTACATCCCAGTG
TAGTGGCTTTTCAGCATGGGTATGCTGGCGAGCTGTTGAATTTACGTCGC
AGTATGTCATCCCATTCCATGTCTAGGCGTTTTATCGCACTCGCGCTGGA
AATTATGATTTGGCGCTCCACAGCCACGTTATTTTCCTTACTCAACATCT
TCCGTGTTCGGCTGTTTTTGTTTTGGCAGGGAGGTAGAGGGGACAGGGAA
AGCTTGCGAATCACCCTGTTGCGCGTGTGGCCGACGGTGTCTGGGGCAGA
CCTCACTAACACGGAAACGTGGGCACTAAGTGAGGATCTGCGCATCCTCA
CTGCTGAGCGGAAAGCCCTCAACATTCTGGCCAAAAATATGCTGGAAACG
AAACAGATCGGTTGCCTTGTTGTGGAGTTAGAGCGAGCGTTGGCTGAGTT
AAGTACTGAGTGTTCCTAAATAAAAGGATTGGTTACAACGAGAAATTTTG
TGTCGCTGCCAGTGAGGCGTAATTAGGGACCCAGCTTTTCACGTGTTTTG
TCGAGGAGGGTTGTGTTTTGTGCCAACAGTCTTGGCATAATTTTGTTATG
GTACAAGGTAGCAATGTGAATAAACAGCACCCAACGCAATCGCCGATAGG
GTTGTTAGTAGTTTTCCATAAAAGCATTTGTGATGAGACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8483:292..4232+

>mRNA_H-paniculata_contig8483.16466.1 ID=mRNA_H-paniculata_contig8483.16466.1|Name=mRNA_H-paniculata_contig8483.16466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at H-paniculata_contig8483:292..4232+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCTGACACTGTATACATGGGTGGGCTAACCGAAGAGAGGTACGT
AAACCCGTTAACTCACGGCATTCTGATGCATGCATTCAAGTGGGCTATGG
ATGGTGTGAGTGACTACTTGCCCCCGGAGCAGCAAGGCTGGCTTAGACGA
GAACCTGGCGGAGTGCGTGGCGATGTGAAGCAGATGTCTTCTGACACTGT
ATACATGGGTGGGCTAACCGAAGAGAGGTACGTAAACCCGTTAACTCACG
GCATTCTGATGCATGCATTCAAGTGGGCTATGGATGGTGTGAGTGACTAC
TTGCCCCCGGAGCAGCAAGGCTGGCTTAGACGAGAACCTGGCGGAGTGCG
TGGCGATGTGAAGCAGCAAACACTCGATGTCCAGCGAAAACGTATGGCGA
ACATCGTATTGTGCTCGGCCTCGGAGAACAGGAAGTCGAAAGAGATTGCC
TCATTCCTGGACCACTGTCAAGATGAATCGGGCACGGGATCAGTCATGTC
TCTAGTCCTTTTGGATGGCCTATGGTCGCTGCCGGCATTCATTCGTCCCG
TGGTGGGCGACCAGGTTGTCGTCGAGGTCTACGATGCCCTCCGACGCTAT
GGAGTGTTGACGAACAAACACTCGATGTCCAGCGAAAACGTATGGCGAAC
ATCGTATTGTGCTCGGCCTCGGAGAACAGGAAGTCGAAAGAGATTGCCTC
ATTCCTGGACCACTGTCAAGATGAATCGGGCACGGGATCAGTCATGTCTC
TAGTCCTTTTGGATGGCCTATGGTCGCTGCCGGCATTCATTCGTCCCGTG
GTGGGCGACCAGGTTGTCGTCGAGGTCTACGATGCCCTCCGACGCTATGG
AGTGTTGACGAAGTTCGGGGCACTGAAGCCTCCGGCGACACAAATACCGA
CAGTGCCGGAGGAGAAATATACCGATAGCCAGCGAGAGAGCCGATCATCT
GTCGCTTCTTCTGTGATATGGGTATATGTTCGGGGCACTGAAGCCTCCGG
CGACACAAATACCGACAGTGCCGGAGGAGAAATATACCGATAGCCAGCGA
GAGAGCCGATCATCTGTCGCTTCTTCTGTGATATGGGTATATAGGGTCTG
GAGTACAGTATTTGTTCTCGCGGCGACGGTGTTGGGTTTCTCGGGACTGG
GGATCGACCTGCCAGTAACGGGTGTGTGTTGGTATGTGCTGGGCACCATG
TTGTTGGATTCGAGGGTCTGGAGTACAGTATTTGTTCTCGCGGCGACGGT
GTTGGGTTTCTCGGGACTGGGGATCGACCTGCCAGTAACGGGTGTGTGTT
GGTATGTGCTGGGCACCATGTTGTTGGATTCGGTCTGCTTAGACGACGCG
CTGTTCGCAGAATTGCAGCACTGTATTGTGCCGGCGTTAAGGGAACGCGC
CGCATATCACGAGTCCGGACATTTCCTCTTGTCTTACCTACTGGGGTGCC
CGATTTCCGTTTGCACTATTGGTCTGCTTAGACGACGCGCTGTTCGCAGA
ATTGCAGCACTGTATTGTGCCGGCGTTAAGGGAACGCGCCGCATATCACG
AGTCCGGACATTTCCTCTTGTCTTACCTACTGGGGTGCCCGATTTCCGTT
TGCACTATTGGTGGATGGGCCTCAATACGACATGGTAAGTCACTGGGCAG
CGAGCCATTCGTGAGCTGTATCGACCCCGAGTTGAGTATGATGGAGAGGC
CGCAGTGGCCGCAGCGCAAAGCATGGAGAGAACTATCGGGAGACGAAATG
GGGCAAGTGCTGTGGCGAATTGTGCAGGATGACTGGGAGCCTTGGACGGA
AACCCCACCAGTTGAAGTTGGGTTGAACTCCATCGCCAGTAAAAGTGGGT
CGGCTTCACGGAGGGAGACAGGGCGAGCGTATGGAGGAAACCAAGTAGGA
GAGGGAAAACGACGAACTGTATCATACCGATTCGCGTTGCTGGCGATGGC
GGGGGCGGCGGCGGAGACCATCGTCACCGGCTTCGAAATTGTGGATGGGC
CTCAATACGACATGGTAAGTCACTGGGCAGCGAGCCATTCGTGAGCTGTA
TCGACCCCGAGTTGAGTATGATGGAGAGGCCGCAGTGGCCGCAGCGCAAA
GCATGGAGAGAACTATCGGGAGACGAAATGGGGCAAGTGCTGTGGCGAAT
TGTGCAGGATGACTGGGAGCCTTGGACGGAAACCCCACCAGTTGAAGTTG
GGTTGAACTCCATCGCCAGTAAAAGTGGGTCGGCTTCACGGAGGGAGACA
GGGCGAGCGTATGGAGGAAACCAAGTAGGAGAGGGAAAACGACGAACTGT
ATCATACCGATTCGCGTTGCTGGCGATGGCGGGGGCGGCGGCGGAGACCA
TCGTCACCGGCTTCGAAATTGGAGGTAGAGGGGACAGGGAAAGCTTGCGA
ATCACCCTGTTGCGCGTGTGGCCGACGGTGTCTGGGGCAGACCTCACTAA
CACGGAAACGTGGGCACTAAGTGAGGATCTGCGCATCCTCACTGCTGAGC
GGAAAGCCCTCAACATTCTGGCCAAAAATATGCTGGAAACGAAACAGATC
GGTTGCCTTGTTGTGGAGTTAGAGCGAGCGTTGGCTGAGTTAAGTACTGA
GTGTTCCTAAGGAGGTAGAGGGGACAGGGAAAGCTTGCGAATCACCCTGT
TGCGCGTGTGGCCGACGGTGTCTGGGGCAGACCTCACTAACACGGAAACG
TGGGCACTAAGTGAGGATCTGCGCATCCTCACTGCTGAGCGGAAAGCCCT
CAACATTCTGGCCAAAAATATGCTGGAAACGAAACAGATCGGTTGCCTTG
TTGTGGAGTTAGAGCGAGCGTTGGCTGAGTTAAGTACTGAGTGTTCCTAA
back to top