mRNA_H-paniculata_contig8474.16462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8474.16462.1
Unique NamemRNA_H-paniculata_contig8474.16462.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8474.16462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8474contigH-paniculata_contig8474:3830..4464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size243
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8474.16462.1prot_H-paniculata_contig8474.16462.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8474 3899..4464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.0012393-UTR-H-paniculata_contig8474:3829..38981622931064.0012393-UTR-H-paniculata_contig8474:3829..3898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8474 3830..3898 +
1691481573.3390682-UTR-H-paniculata_contig8474:3829..38981691481573.3390682-UTR-H-paniculata_contig8474:3829..3898Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8474 3830..3898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.0230353-CDS-H-paniculata_contig8474:3898..39181622931064.0230353-CDS-H-paniculata_contig8474:3898..3918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8474 3899..3918 +
1691481573.3507907-CDS-H-paniculata_contig8474:3898..39181691481573.3507907-CDS-H-paniculata_contig8474:3898..3918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8474 3899..3918 +
1622931064.0525548-CDS-H-paniculata_contig8474:4241..44641622931064.0525548-CDS-H-paniculata_contig8474:4241..4464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8474 4242..4464 +
1691481573.3588595-CDS-H-paniculata_contig8474:4241..44641691481573.3588595-CDS-H-paniculata_contig8474:4241..4464Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8474 4242..4464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8474.16462.1

>prot_H-paniculata_contig8474.16462.1 ID=prot_H-paniculata_contig8474.16462.1|Name=mRNA_H-paniculata_contig8474.16462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
MLCLRHGNPWSRQHEGVPSVHRVPHGMYLKNTLTVAIRTTVLVLPSENKS
VHVPGEGVWHGFSRTFQNSAPTCRGGHFLG*
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mRNA from alignment at H-paniculata_contig8474:3830..4464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8474.16462.1 ID=mRNA_H-paniculata_contig8474.16462.1|Name=mRNA_H-paniculata_contig8474.16462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=635bp|location=Sequence derived from alignment at H-paniculata_contig8474:3830..4464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAAGGACGAGCAGCAGGACCCGCACGAAGCGTTCACCATGATCACGGAC
GTGGTTAAGGTTTTGGACTATGCTCTGCCTGCGTCACGGGTGAGAAGAAT
GACGTGTCGTAGAGTAAGTCATGCGCTATTCCTTACATTGTTGATAATGA
TATTTCCGCAGTGGAGTATGTTTCATGCTCTCACATACAGCTGCGAGGTG
TACTTATCGTCCGCTTGACAGAATCGTGCGCTGCTGCATCAACTATCACT
TCCACGCTTGTGGAGCATGGAGAGAGTATAATTTAGTGTCGTTCCTCCCG
TGGCACACACAGTGTGCGCGCAACTTTCAGTTGTGCTCACTGTGCCCCCA
TTCCCCCCGTCCCCGCGCGCACCCCGTGACCACACCCTCTGCCCACTTGA
CGAGCCCCGTAGTAACCCCTGGAGCCGTCAACATGAAGGAGTTCCAAGTG
TGCATCGAGTGCCACATGGTATGTATTTGAAAAATACTCTGACAGTAGCA
ATTCGCACCACCGTATTGGTACTACCTTCGGAGAACAAGTCAGTTCATGT
CCCCGGTGAAGGGGTGTGGCATGGGTTCTCGAGAACTTTCCAAAATTCAG
CCCCGACATGTCGCGGTGGTCATTTTTTGGGTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig8474:3830..4464+

>mRNA_H-paniculata_contig8474.16462.1 ID=mRNA_H-paniculata_contig8474.16462.1|Name=mRNA_H-paniculata_contig8474.16462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig8474:3830..4464+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCTGCCTGCGTCACGGATGCTCTGCCTGCGTCACGGTAACCCCTGG
AGCCGTCAACATGAAGGAGTTCCAAGTGTGCATCGAGTGCCACATGGTAT
GTATTTGAAAAATACTCTGACAGTAGCAATTCGCACCACCGTATTGGTAC
TACCTTCGGAGAACAAGTCAGTTCATGTCCCCGGTGAAGGGGTGTGGCAT
GGGTTCTCGAGAACTTTCCAAAATTCAGCCCCGACATGTCGCGGTGGTCA
TTTTTTGGGTTAATAACCCCTGGAGCCGTCAACATGAAGGAGTTCCAAGT
GTGCATCGAGTGCCACATGGTATGTATTTGAAAAATACTCTGACAGTAGC
AATTCGCACCACCGTATTGGTACTACCTTCGGAGAACAAGTCAGTTCATG
TCCCCGGTGAAGGGGTGTGGCATGGGTTCTCGAGAACTTTCCAAAATTCA
GCCCCGACATGTCGCGGTGGTCATTTTTTGGGTTAA
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