mRNA_H-paniculata_contig8442.16439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8442.16439.1
Unique NamemRNA_H-paniculata_contig8442.16439.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Match: D8LR83_ECTSI (PEROXIDASE_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR83_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 5.700e-10
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   37 GVGLATLI-PKSAAASVQFETERYGDKELKIATVNKLRQQIRN 162
            G+GLA  + P++A ASV FETERYGDKELKIATVNKLRQQIRN
Sbjct:   76 GLGLALAVSPEAAQASVNFETERYGDKELKIATVNKLRQQIRN 118
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BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Match: K8ZA26_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZA26_NANGC)

HSP 1 Score: 48.9 bits (115), Expect = 4.470e-6
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   70 AAASVQFETERYGDKELKIATVNKLRQQIRNVV 168
            A ASV F+ +RYGDKELKIATVNKL+Q++RN +
Sbjct:   43 ARASVAFDPDRYGDKELKIATVNKLKQKLRNAI 75
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BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Match: A0A7S2QWC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QWC3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.050e-6
Identity = 23/43 (53.49%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:   40 VGLATLIPKSAAASVQFETERYGDKELKIATVNKLRQQIRNVV 168
            +G +  +P  A ASV ++ +RYGDKELKIATVNK+RQ +R+ +
Sbjct:   63 IGASVFLPGQATASVFYDPDRYGDKELKIATVNKIRQNVRDAI 105
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BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Match: A0A835ZHI8_9STRA (Heme peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI8_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.110e-6
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:   46 LATLIPKSAAASVQFETERYGDKELKIATVNKLRQQIRN 162
            LATL+P ++ ASV FE +RYGDKELK+ TV+K+RQ  RN
Sbjct:   58 LATLVPTASEASVYFEIDRYGDKELKLGTVSKIRQAWRN 96
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BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Match: A0A7S1FWQ2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWQ2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.460e-5
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   52 TLI-PKSAAASVQFETERYGDKELKIATVNKLRQQIRNVV 168
            TLI P+ A A+V F+ +RYGDKELKIATVNKLRQ +R+ +
Sbjct:   74 TLIQPQEAYATVFFDPDRYGDKELKIATVNKLRQNVRSTI 113
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BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Match: W7U1L4_9STRA (L-ascorbate peroxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1L4_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.480e-5
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   70 AAASVQFETERYGDKELKIATVNKLRQQIRNVV 168
            A ASV F+ +RYGDKELKIATVNKL+Q++RN +
Sbjct:   88 ARASVAFDPDRYGDKELKIATVNKLKQKLRNAI 120
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8442.16439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LR83_ECTSI5.700e-1079.07PEROXIDASE_4 domain-containing protein n=2 Tax=Ect... [more]
K8ZA26_NANGC4.470e-669.70Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A7S2QWC3_9STRA5.050e-653.49Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A835ZHI8_9STRA5.110e-664.10Heme peroxidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S1FWQ2_9STRA2.460e-565.00Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
W7U1L4_9STRA2.480e-569.70L-ascorbate peroxidase n=1 Tax=Nannochloropsis gad... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8442contigH-paniculata_contig8442:1917..2084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog2880.D8LR83
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Peroxidase
EggNOG OGs2DJYV@1,2S61P@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931060.6786544-CDS-H-paniculata_contig8442:1916..20841622931060.6786544-CDS-H-paniculata_contig8442:1916..2084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8442 1917..2084 +
1691481571.8946805-CDS-H-paniculata_contig8442:1916..20841691481571.8946805-CDS-H-paniculata_contig8442:1916..2084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8442 1917..2084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8442.16439.1prot_H-paniculata_contig8442.16439.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8442 1917..2084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8442.16439.1

>prot_H-paniculata_contig8442.16439.1 ID=prot_H-paniculata_contig8442.16439.1|Name=mRNA_H-paniculata_contig8442.16439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
LAQAGAIGAGVAGVGLATLIPKSAAASVQFETERYGDKELKIATVNKLRQ
QIRNVV
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mRNA from alignment at H-paniculata_contig8442:1917..2084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8442.16439.1 ID=mRNA_H-paniculata_contig8442.16439.1|Name=mRNA_H-paniculata_contig8442.16439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig8442:1917..2084+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGCCCAGGCGGGGGCTATCGGTGCTGGTGTTGCTGGAGTGGGCTTGGC
GACACTGATTCCAAAAAGCGCTGCTGCGTCTGTGCAGTTTGAGACCGAGC
GATACGGCGATAAAGAGCTCAAGATTGCCACGGTTAACAAGCTCAGACAG
CAGATTCGGAATGTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig8442:1917..2084+

>mRNA_H-paniculata_contig8442.16439.1 ID=mRNA_H-paniculata_contig8442.16439.1|Name=mRNA_H-paniculata_contig8442.16439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig8442:1917..2084+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGCCCAGGCGGGGGCTATCGGTGCTGGTGTTGCTGGAGTGGGCTTGGC
GACACTGATTCCAAAAAGCGCTGCTGCGTCTGTGCAGTTTGAGACCGAGC
GATACGGCGATAAAGAGCTCAAGATTGCCACGGTTAACAAGCTCAGACAG
CAGATTCGGAATGTGGTACTGGCCCAGGCGGGGGCTATCGGTGCTGGTGT
TGCTGGAGTGGGCTTGGCGACACTGATTCCAAAAAGCGCTGCTGCGTCTG
TGCAGTTTGAGACCGAGCGATACGGCGATAAAGAGCTCAAGATTGCCACG
GTTAACAAGCTCAGACAGCAGATTCGGAATGTGGTA
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