prot_H-paniculata_contig841.16421.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig841.16421.1
Unique Nameprot_H-paniculata_contig841.16421.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length912
Homology
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 4.740e-56
Identity = 185/448 (41.29%), Postives = 232/448 (51.79%), Query Frame = 0
Query:    6 PRTSLWSRLVVFYSFNKPNQLNVKVIREIIAKYGLKERELAARLLSKYGRPLPRSVSNQEXXXXXXXXXMQDEDPATQRAEHAPATSAAKSTLSTPSTSSVG-GAKGLDSSGEAAAAAARGRSCAAGPGRSESADWAGTGRDPPQQGQREGTEQIIHVAGSLDFRSPFFDALKALRDDKLKPPFPKQAALDNVFKFSRLLPKSHVFEKQSQSSALPXXXXXXXXXXXXXXXXXSGTFAFPAVASGHGSSNADPPSSRVSTGKPERGGDAKRPQPPHAGGGTISSATELATELSKSVGGVTAGGGKRVTSGPDVGPGTLEEMALVGHYGPGARGIIATTDDIGKVDALKALGRH--QRVIERRARTGGRTLGSNLAPVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTSIPAHPP 450
            PRTSLWSRLVVFYS NK +QLN KV+ EI+AKYG KE+EL+ARLL KYGRPLP SV++Q+         M+DED A  +       S+  S + T ST+  G G+ G   +G  AAA                       R+  + G+ EG          L+FRS FFD L+AL    L+PPFP++ ALDN+ KF R+LPK       + ++   XXXXXXXXXXXXXXX  S +       SGH                  RGG A    PP A G    S     T  +       +GGG+                   G +G     ++ +  D+ + D   AL R   +  +   A T          PV RI++EYAG+GPYSLL+RLH E RRA VMIRRVN IRG CTGLIR FDRHMN+LL DV E+YT  +PA  P
Sbjct:    4 PRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAA-----------------------RENKELGRGEGAGSSP-TGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRS-GVSYFGSGH------------------RGGGAGVVPPPAAAGSPRGSHQARKTWPA-------SGGGR-------------------GRHGL----LVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAGRFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGP 378          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 9.420e-54
Identity = 178/452 (39.38%), Postives = 225/452 (49.78%), Query Frame = 0
Query:    6 PRTSLWSRLVVFYSFNKPNQLNVKVIREIIAKYGLKERELAARLLSKYGRPLPRSVSNQEXXXXXXXXXMQDEDPATQRAEHAPATSAAKSTLSTPSTSSVGGAKGLDSSGEAAAAAARGRSCAAGPGRSESADWAGTGRDPPQQGQREGTEQIIHVAGSLDFRSPFFDALKALRDDKLKPPFPKQAALDNVFKFSRLLPKSHVFEKQSQSSA--LPXXXXXXXXXXXXXXXXXSGTFAFPAVASGHGSSNADPPSSRVSTGKPERGGDAKRPQPPHAGGGTISSATELATELSKSVGGVTAGGGKRVTSGPDVGPGTLEEMALVGHYGPGARGIIATTDDIGKVDALKALGRHQRVIERRARTGGRTLGSNLA-----PVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTSIPAHPP 450
            PRTSLWSRLVVFYS NK +QLN KV+ EI+AKYG KE+EL+ARLL KY RPLP SV++Q+         M+DED A  +       ++  S     ST++ G                      AG      A    T RD  + G+ EG          L+FRS FFD L+AL    L+PPFPK+ ALDN+ KF R+LPK H     + ++     XXXXXXXXXXXX     SG   F A     G+    PP++    G P RG    R   P +GGG +                                            Y P    ++ +  D+ + D  K +   +R+ E           ++ A     PV RI++EYAG+GPYSLL+RLH E RRA VMIRRVN IRG CTGLIR FDRHMN+LL DV E+YT  +PA  P
Sbjct:    4 PRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAG----------------------AGXXXXXXAGREPTARDNEKLGRGEGAGSSPK-GDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNA---AGSP-RGSHQARETWPTSGGGRV-------------------------------------------RYSP----LVRSAADMERAD--KDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGP 379          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.860e-9
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0
Query:  371 TLGSNLAPVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDY 441
            T+     PV   + +    GP SLLHR  V K R  V++RR++ IRG CTG ++GFD+HMN++L DV + +
Sbjct:  149 TVAPKKPPVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A067CQ40_SAPPC (Sm domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CQ40_SAPPC)

HSP 1 Score: 69.3 bits (168), Expect = 3.970e-9
Identity = 33/63 (52.38%), Postives = 43/63 (68.25%), Query Frame = 0
Query:  389 AGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTSI--PAHP 449
            AGP S+L      K + CV+IRRVN IRG CTG ++GFD+HMN++L DV+E Y   +  P HP
Sbjct:  162 AGPLSVLRACLKAKAKVCVVIRRVNSIRGTCTGFLKGFDKHMNVVLIDVTERYVPLLRAPEHP 224          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A024U999_9STRA (Sm domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U999_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 8.180e-9
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  371 TLGSNLAPVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTSIP-AHPP 450
            T G+   P+   + E    GP SLLH   + + R  V++RR+  IRG CTG ++GFD+HMN++L DV+E +   IP  HPP
Sbjct:  149 TTGAKKPPILHAIAELHKEGPLSLLHACLMARSRVVVVVRRICSIRGTCTGYLKGFDKHMNVVLFDVTEAF---IPLTHPP 226          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.570e-8
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 0
Query:  349 DALKALGRHQRVIERRARTGGRTLGSNLAPVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDY 441
            DAL+AL         +A + G  L    A     +++    GP+ +L R  +E+ R  V++RRVN +RG CTG ++ FD+HMN++L DVS++Y
Sbjct:   52 DALRAL---------QAPSNGLRLPVTTAYPLDNIQKCRHLGPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.060e-8
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 0
Query:  381 RIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTT 443
            R+ + Y   GP+++L R  +E+RR  V++RRVN IRG C G ++ FD+HMN++L DV E Y T
Sbjct:  184 RLADTYMD-GPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERYVT 245          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A2D4BUY2_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY2_PYTIN)

HSP 1 Score: 67.8 bits (164), Expect = 2.190e-8
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0
Query:  354 LGRHQRVIERRARTGGRTLGSNLAPVTRIMEEYAGA---GPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSE 439
            +G  Q   +R+ R   +      AP   + E  A     GP+S+L R  +E++R  V++RRVN +RGVC G ++ FD+HMN++L DV+E
Sbjct:  144 IGPAQATAKRQQRQATKPAADVTAPKPTLFETLADTYLDGPFSVLRRCFLERKRVRVVLRRVNSVRGVCVGFLKAFDKHMNLVLLDVTE 232          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.730e-8
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 0
Query:  359 RVIERRARTGGRTLGSNLAPVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTS 444
            +V++++ R    TL   LA      + Y   GP+ +L R  +E+ R  V++RRVN +RG C+G ++ FD+HMN++L DVS++Y  S
Sbjct:  161 KVVDKKTRAATPTLFEQLA------DTYLD-GPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEYIPS 239          
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 3.370e-8
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 0
Query:  378 PVTRIMEEYAGAGPYSLLHRLHVEKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTSIPAHPP 450
            P+   + +    GP ++L  +   + + CV+IRRVN IRG CTG ++GFD+H NI+L DV+E Y   +    P
Sbjct:  155 PLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQP 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig841.16421.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBR8_9PHAE4.740e-5641.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V3_ECTSI9.420e-5439.38Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
W4FR27_9STRA3.860e-943.66Sm domain-containing protein n=2 Tax=Aphanomyces a... [more]
A0A067CQ40_SAPPC3.970e-952.38Sm domain-containing protein n=2 Tax=Saprolegnia T... [more]
A0A024U999_9STRA8.180e-943.21Sm domain-containing protein n=1 Tax=Aphanomyces i... [more]
A0A662WXN3_9STRA1.570e-837.63Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A5D6YBS7_9STRA2.060e-847.62Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A2D4BUY2_PYTIN2.190e-838.20Sm domain-containing protein n=1 Tax=Pythium insid... [more]
A0A3F2RTL9_9STRA2.730e-838.37Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A1V9YMI3_9STRA3.370e-839.73Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 375..466
e-value: 3.3E-9
score: 38.4
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 162..225
coord: 385..909
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 390..444

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig841contigH-paniculata_contig841:16593..25806 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig841.16421.1mRNA_H-paniculata_contig841.16421.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig841 16561..25885 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig841.16421.1 ID=prot_H-paniculata_contig841.16421.1|Name=mRNA_H-paniculata_contig841.16421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=912bp
MDAVAPRTSLWSRLVVFYSFNKPNQLNVKVIREIIAKYGLKERELAARLL
SKYGRPLPRSVSNQELRKVLADFGMQDEDPATQRAEHAPATSAAKSTLST
PSTSSVGGAKGLDSSGEAAAAAARGRSCAAGPGRSESADWAGTGRDPPQQ
GQREGTEQIIHVAGSLDFRSPFFDALKALRDDKLKPPFPKQAALDNVFKF
SRLLPKSHVFEKQSQSSALPPPPQQQQQLPPSPAPPPSGTFAFPAVASGH
GSSNADPPSSRVSTGKPERGGDAKRPQPPHAGGGTISSATELATELSKSV
GGVTAGGGKRVTSGPDVGPGTLEEMALVGHYGPGARGIIATTDDIGKVDA
LKALGRHQRVIERRARTGGRTLGSNLAPVTRIMEEYAGAGPYSLLHRLHV
EKRRACVMIRRVNGIRGVCTGLIRGFDRHMNILLADVSEDYTTSIPAHPP
EPPSPPQPYSTRPQQMPETGSSGASAGKLDLPTGKGARAGIAMFPGGTGN
MVVVQEERADALVTSRARIGGCPEGGEEEARGTGDVQMGLVDGVGSCIGY
AKVAVRKDETGASEQDTVGRADGPESVRGVKTRNGESGRDAKLTTGESAT
FEGGEKGHRSKTTNRSKSDDDRGRNIKRADRNNNDAVTGRNDTGRSERAD
RNNNDAVTGRNDTGRSERVDRNRGSAFSENRRTTSRDRVSDAGRSERVDR
CRGSDADENRRKTSRDRASDASRRERGDGDSGNGASENRRKASRDRGSGA
GRSERVDKDNGSDAGENRRKSSRDRTSDNTVVGKYTDASENPGGESEWLE
KAAAAVGNRGRGEHHAPASSCDSTKGLNQTSSGPGKENSVEGEGAVCGKA
EGRNSCDDRDSQRRKTKSRGRRSRHKGPWRGDLVEIRRQRFLKQLLIRGD
NVVMIWEAPRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039267Lsm11
IPR010920LSM_dom_sf