mRNA_H-paniculata_contig8398.16403.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8398.16403.1
Unique NamemRNA_H-paniculata_contig8398.16403.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8398.16403.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.220e-6
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:  178 GRSLCMGAFSIVLMKSCT--ERGHCLPIKALQLVSLEMCTACRKLGTLHVRVAIDTPRRLWATS 363
            G S C+ AF + L ++C   E+   +    LQLVSLE+C ACR++ TLHVRV   TP  LW  S
Sbjct:    5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPS 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8398.16403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNI6_9PHAE3.220e-646.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8398contigH-paniculata_contig8398:2648..4391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931054.9271986-CDS-H-paniculata_contig8398:2647..28251622931054.9271986-CDS-H-paniculata_contig8398:2647..2825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8398 2648..2825 +
1691481569.294968-CDS-H-paniculata_contig8398:2647..28251691481569.294968-CDS-H-paniculata_contig8398:2647..2825Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8398 2648..2825 +
1622931054.9734735-CDS-H-paniculata_contig8398:4184..43901622931054.9734735-CDS-H-paniculata_contig8398:4184..4390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8398 4185..4390 +
1691481569.3038597-CDS-H-paniculata_contig8398:4184..43901691481569.3038597-CDS-H-paniculata_contig8398:4184..4390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8398 4185..4390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8398.16403.1prot_H-paniculata_contig8398.16403.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8398 2648..4390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8398.16403.1

>prot_H-paniculata_contig8398.16403.1 ID=prot_H-paniculata_contig8398.16403.1|Name=mRNA_H-paniculata_contig8398.16403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
GLYGQSRCCSKSALYGVSSSQPLIRRCAFEGCTAYSTMNSVGSKAAAAGI
FQDEVDRQSGRSLCMGAFSIVLMKSCTERGHCLPIKALQLVSLEMCTACR
KLGTLHVRVAIDTPRRLWATSADQPSPS
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mRNA from alignment at H-paniculata_contig8398:2648..4391+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8398.16403.1 ID=mRNA_H-paniculata_contig8398.16403.1|Name=mRNA_H-paniculata_contig8398.16403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1744bp|location=Sequence derived from alignment at H-paniculata_contig8398:2648..4391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTGT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTTTGAGGGCTGTACGG
CCTACTCTACGATGAATTCCGTCGGATCGAAAGCGGCGGCAGCTGGCATC
TTTCAAGACGAGGTGGATAGACAATCGGGTGAGAGAGGCGCCAGACAGGT
CTTGACGGTGTATGAATCTATCGATTTAGGACAGTATGTATCAACTGTCG
GTAATACGCTGACTGCCAAGGTCTGTGTCAAATAATAGGTTGAGGCCTCT
GGGATTCTGAAAGTATCTCATGATAGCTAGAGTAATCTTAAACAACAGCA
CATGGTCTGATGGTAATAAAGAAAAGAAAATAAACCCCCGGAGATCAAGT
CACTGATATAAGGCACATTTGACAGTGAAAAAAATGCATGAGAAGTAGGC
TGTCCGTATCAAGAGACAGTTCATATTGTGGGACTCGCTGCTAGTTTTCC
TTTTGATACCCGTACCGATGGAAATGCTGTTATTCCAATGAGTAAAGAAA
AAAATAATGTGATCCCGGGACATTGTTGCGCTATCCCCCGAATATTTGGT
TGTCAGGTGTCCTCTTGACAGCTTTTGTCAAGGCGTGCTCGACTGGCGTG
TGTTTCGCGTATTCAATTTTTCATCCTACCTTCGATATGTGGAAAATCTT
CTAAAGTCACACTGGAATCAGTGTTGATGCAACAATAGTATGAACGTGTT
CAACCTAGACTCTAGCCCCCCCCCCCCCCCCCCCCCAACGCCCTTGCAGA
ACACTCGAAAAATACTCGTAGAAAGTAGCATGGTACGCGTTCTTCAATTT
CTGAACAAGGATTCGAAACCGGAAAGGATTTTTGCAAAATTCGAACAGTC
TGGGCTAATTGTTTTCGACGTCACGACGCTTTGAAGATTTTTGAAACACC
TTACGCTGAGCAAGACGGAATTATCTCGGAACTACTCGCCGAGAAAATTT
GGAGCGTAGTTACGGTCCTAGTCCTCGGATATGAATGTTTCCGTTCCTCG
CGCGAGAGGGCTCAAACGATGTGCACGATTGTGAGGAGAAAACTTTCATC
TGTTTGATGACCTCTGTACATAAATTTTCAGTGGTCGAGATGCTTGGCAA
GTAGGTCGAGATAATTCAGAGTAGTTTAGTGCTTACTTATGGTGCTGAGT
GTTTGGAAGCGAGATTTCGCCGAGACCATGATGTCGGCTACATTTCCAAA
AGCATGCAGTCGAAAGAGGAGCCGTGGCGGCCACTGACTATCGTACCAAT
AGTTGTACCCATCACGATCCAGCGGCGCTTGTCGCTGAGCAACAATTTGA
GACCGAGTTTCCGTCGTATGAAACTATCTTTGTGGATGGACAGCGATAGT
AGGACTGCAGTGATGCTTGTGTACGGCGATACCGTATTTTGACTCCAGTA
ATAGTCGTGTTCCGCCATTGCACTGTTGGGCACAACTTCACTCGTACATG
TGAGCCAGCGATGATTGTTCGATTGCCGTTGCTTCAGGCCGTAGCCTCTG
TATGGGTGCCTTCAGCATCGTGCTCATGAAGTCTTGCACAGAGCGGGGGC
ATTGCTTGCCCATCAAGGCGTTGCAGCTGGTGTCGCTGGAGATGTGCACG
GCGTGCCGCAAGTTAGGTACGCTACATGTGAGGGTGGCGATAGACACACC
GCGACGACTGTGGGCGACTTCTGCCGATCAGCCATCGCCTTCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8398:2648..4391+

>mRNA_H-paniculata_contig8398.16403.1 ID=mRNA_H-paniculata_contig8398.16403.1|Name=mRNA_H-paniculata_contig8398.16403.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig8398:2648..4391+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTGTACGGCCAGTCAAGGTGTTGCAGCAAATCCGCACTGTACGGTGT
CTCATCGTCGCAGCCTCTGATACGTAGGTGTGCTTTTGAGGGCTGTACGG
CCTACTCTACGATGAATTCCGTCGGATCGAAAGCGGCGGCAGCTGGCATC
TTTCAAGACGAGGTGGATAGACAATCGGGGTCTGTACGGCCAGTCAAGGT
GTTGCAGCAAATCCGCACTGTACGGTGTCTCATCGTCGCAGCCTCTGATA
CGTAGGTGTGCTTTTGAGGGCTGTACGGCCTACTCTACGATGAATTCCGT
CGGATCGAAAGCGGCGGCAGCTGGCATCTTTCAAGACGAGGTGGATAGAC
AATCGGGCCGTAGCCTCTGTATGGGTGCCTTCAGCATCGTGCTCATGAAG
TCTTGCACAGAGCGGGGGCATTGCTTGCCCATCAAGGCGTTGCAGCTGGT
GTCGCTGGAGATGTGCACGGCGTGCCGCAAGTTAGGTACGCTACATGTGA
GGGTGGCGATAGACACACCGCGACGACTGTGGGCGACTTCTGCCGATCAG
CCATCGCCTTCGGCCGTAGCCTCTGTATGGGTGCCTTCAGCATCGTGCTC
ATGAAGTCTTGCACAGAGCGGGGGCATTGCTTGCCCATCAAGGCGTTGCA
GCTGGTGTCGCTGGAGATGTGCACGGCGTGCCGCAAGTTAGGTACGCTAC
ATGTGAGGGTGGCGATAGACACACCGCGACGACTGTGGGCGACTTCTGCC
GATCAGCCATCGCCTTCG
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