mRNA_H-paniculata_contig8339.16354.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8339.16354.1
Unique NamemRNA_H-paniculata_contig8339.16354.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: D7G562_ECTSI (Protein kinase domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G562_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.460e-26
Identity = 55/73 (75.34%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    4 YDFTGPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            YDFTGPVLGKGSFATVLRVRDR+SGSEYAVKQ    DL   KD P+ ++M+  EC TMM LSHPNIVRLQEVY
Sbjct:   95 YDFTGPVLGKGSFATVLRVRDRVSGSEYAVKQ---IDLHAIKDSPSSLRMIERECRTMMTLSHPNIVRLQEVY 164
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: A0A6H5KUQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ0_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.860e-24
Identity = 53/74 (71.62%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 VYDFTGPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            +YDFTGPVLG G+FATVLRVRD MSG EYAVKQ    DL+  KDDP+ M+ML NE   M AL+HPNIVRLQEVY
Sbjct:   44 MYDFTGPVLGSGAFATVLRVRDHMSGVEYAVKQ---IDLSGIKDDPSTMRMLYNEIKGMKALNHPNIVRLQEVY 114
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: A0A835YS30_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS30_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.130e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 VYDFTGPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            VYDF+GPVLGKG +A+V+ V+ + +G+ YA+KQ    D ++       + +L+NE  +M  L HPNIVRLQEVY
Sbjct:   54 VYDFSGPVLGKGGYASVMMVKHKTTGALYAMKQIDITDFSEL-----ALHLLQNEIESMKHLVHPNIVRLQEVY 122
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: C5LXK6_PERM5 (Calcium-dependent protein kinase, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LXK6_PERM5)

HSP 1 Score: 52.4 bits (124), Expect = 4.980e-6
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   16 GPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            G +LG+G    V   +DR SG   AVK  +  +++ A+ D     ML +E    + LSHPNIVRL+EVY
Sbjct:  142 GGILGEGMNGAVRLAKDRFSGDRVAVKSLSLVNISSAQRD-----MLYDEINIYLPLSHPNIVRLEEVY 205
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: C5LXK5_PERM5 (Calcium-dependent protein kinase, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LXK5_PERM5)

HSP 1 Score: 52.4 bits (124), Expect = 5.030e-6
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   16 GPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            G +LG+G    V   +DR SG   AVK  +  +++ A+ D     ML +E    + LSHPNIVRL+EVY
Sbjct:  316 GGILGEGMNGAVRLAKDRFSGDRVAVKSLSLVNISSAQRD-----MLYDEINIYLPLSHPNIVRLEEVY 379
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: UPI0007A6FC84 (serine/threonine-protein kinase DCLK3 n=1 Tax=Miniopterus natalensis TaxID=291302 RepID=UPI0007A6FC84)

HSP 1 Score: 52.0 bits (123), Expect = 6.880e-6
Identity = 31/70 (44.29%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   13 TGPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            TG V+G G+FA V   R R +G  YA+K   +  L K K+D     M+ +E   + +LSHPNIV+L EVY
Sbjct:  478 TGRVIGDGNFAVVKECRHRDTGQAYAMKIIDKSKL-KGKED-----MMDSEILIIQSLSHPNIVKLHEVY 541
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: A0A6J2M5R7_9CHIR (serine/threonine-protein kinase DCLK3 n=7 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2M5R7_9CHIR)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-5
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1 
Query:   16 GPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            G V+G G+FA V   R R +G  YA+K  ++  L K K+D     M+ +E   + +LSHPNIV+L EVY
Sbjct:  520 GRVIGDGNFAVVKECRHRETGQAYAMKIISKSKL-KGKED-----MIDSEILIIQSLSHPNIVKLHEVY 582
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BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: A0A7J6RL32_PEROL (Protein kinase domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6RL32_PEROL)

HSP 1 Score: 50.8 bits (120), Expect = 1.580e-5
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   16 GPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            G +LG+G    V   +DR +G + AVK  +  +L+  K D     ML +E    + LSHPNIVRL EVY
Sbjct:   35 GGILGEGMNGAVRLAKDRFTGEQVAVKTLSLVNLSPMKRD-----MLYDEINIYLPLSHPNIVRLNEVY 98
[Close]
BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: A0A7J6NGX9_PEROL (Protein kinase domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NGX9_PEROL)

HSP 1 Score: 50.8 bits (120), Expect = 1.660e-5
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   16 GPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            G +LG+G    V   +DR +G + AVK  +  +L+  K D     ML +E    + LSHPNIVRL EVY
Sbjct:  245 GGILGEGMNGAVRLAKDRFTGEQVAVKTLSLVNLSPMKRD-----MLYDEINIYLPLSHPNIVRLNEVY 308
[Close]
BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Match: A0A7J6TG78_PEROL (Protein kinase domain-containing protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6TG78_PEROL)

HSP 1 Score: 50.8 bits (120), Expect = 1.680e-5
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 1 
Query:   16 GPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMKMLRNECTTMMALSHPNIVRLQEVY 222
            G +LG+G    V   +DR +G + AVK  +  +L+  K D     ML +E    + LSHPNIVRL EVY
Sbjct:  133 GGILGEGMNGAVRLAKDRFTGEQVAVKTLSLVNLSPMKRD-----MLYDEINIYLPLSHPNIVRLNEVY 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8339.16354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G562_ECTSI2.460e-2675.34Protein kinase domain containing protein n=1 Tax=E... [more]
A0A6H5KUQ0_9PHAE4.860e-2471.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YS30_9STRA1.130e-1248.65Kinase-like domain-containing protein n=1 Tax=Trib... [more]
C5LXK6_PERM54.980e-642.03Calcium-dependent protein kinase, putative n=1 Tax... [more]
C5LXK5_PERM55.030e-642.03Calcium-dependent protein kinase, putative n=1 Tax... [more]
UPI0007A6FC846.880e-644.29serine/threonine-protein kinase DCLK3 n=1 Tax=Mini... [more]
A0A6J2M5R7_9CHIR1.290e-543.48serine/threonine-protein kinase DCLK3 n=7 Tax=Phyl... [more]
A0A7J6RL32_PEROL1.580e-542.03Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7J6NGX9_PEROL1.660e-542.03Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7J6TG78_PEROL1.680e-542.03Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8339contigH-paniculata_contig8339:112..2741 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931047.6346676-CDS-H-paniculata_contig8339:111..2421622931047.6346676-CDS-H-paniculata_contig8339:111..242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8339 112..242 -
1691481565.723976-CDS-H-paniculata_contig8339:111..2421691481565.723976-CDS-H-paniculata_contig8339:111..242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8339 112..242 -
1622931047.6531174-CDS-H-paniculata_contig8339:2638..27411622931047.6531174-CDS-H-paniculata_contig8339:2638..2741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8339 2639..2741 -
1691481565.738973-CDS-H-paniculata_contig8339:2638..27411691481565.738973-CDS-H-paniculata_contig8339:2638..2741Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8339 2639..2741 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8339.16354.1prot_H-paniculata_contig8339.16354.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8339 112..2741 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8339.16354.1

>prot_H-paniculata_contig8339.16354.1 ID=prot_H-paniculata_contig8339.16354.1|Name=mRNA_H-paniculata_contig8339.16354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
VYDFTGPVLGKGSFATVLRVRDRMSGSEYAVKQATQFDLTKAKDDPNVMK
MLRNECTTMMALSHPNIVRLQEVYVHI*
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mRNA from alignment at H-paniculata_contig8339:112..2741-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8339.16354.1 ID=mRNA_H-paniculata_contig8339.16354.1|Name=mRNA_H-paniculata_contig8339.16354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2630bp|location=Sequence derived from alignment at H-paniculata_contig8339:112..2741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTATGACTTCACCGGGCCCGTTCTCGGTAAGGGCTCGTTCGCCACCGT
GCTTCGCGTGAGAGATCGCATGTCTGGATCGGAATACGCGGTCAAGCAGG
CAAGTGAAACAACGGATAAACGGAGACCTGCTGCGAAAACTGATATCTGT
GAATTTGAGACCAGATGGCCCATGGCACTTCACATCAAGCATTACAGTGG
TCGAGACAGGTTCATAGCGCAGGCATGGGGGGGCGAGCAAGGCTAGCGGT
TCAGGGAGGGTGCGGGTAACCAGGGCAGTAGGCAAGGCGGAGTACTTTCA
TCTTACATCAAACATTTAATATGTAGGTGATACAAGGCAGCGGCAGATGG
CGCACGCACCGACGTGGAAGCAACGCACTGGCTCTGTACACAGGGGGGGT
GCGGGTAATCAGGGCGTGTTATTCGTTTGTGCATATGTAGTTCTCCTCGT
TTTGATGTACTCCACTGCGAGCGCAGCCATCCCTCGAAGTAACCTTGACC
CTAGCCTTGAACCCCACGCACTAGACAATGAGTGCGTTGACAGAGTCCAC
GTTGGCCGCGTTCACATCCGAATTCACCCTAACGTTGGCATGCTCTCCAG
CGTGGCAATCACCGCGAACGTGTTTTTGCCCAGGTTGTTGCAGGGGTCGG
GAAGCACCCCCCCCACAGTAAAAAGAACGGATAAGACCCCCCTTAAATCC
GACCTTATCATGATGTGGTGCATGTATGTGTATAATTTGTATGTTGTATG
TACATATATACATTAGGTGCAGGCATACGTGTTTCGTTTGTACATGTGTA
GTTCACGCTTCGTTTTGCCCTGATGTGAGCCTAACGCTGCACGTGACGAT
AAAGCTAGCCCGGAACATATTTGCCATAGTACCGGAGAGTAGTCCACACT
TCCTAGTGTATGGAGGAAAGTTCCCATAGTGTTAGAGCTGTGGGTGTAGC
AGCGTGGGGACTGCGGTCCATATTTCTCACAGCGTGGGCCAAATCCCCGT
ACTATGTCAGAAGCATGGCCCATACTTGCCATGCTGTGGGAACTATGGCC
GACACTTGGATAATTATGTGCTGCTTTTCCCATACTATGAGAACTGTGGG
CGACCAACCCTGAGGGAAGTGTGAGCTACACTTCCTGCGTATTGTCCACA
CTTGCTACAGTGCGGGAGCTATGAGCCACATTTCCGATTGATGGGGTGTT
GAGAATATCTGATGATGAACCCGCAGGTAGCTGCAAAAGCTAGCGCTGGT
AGCTGTTAAACTGACCGAGCAGGCACGCTATGGCGAAGATACAAACAGTT
AATGATAGTTGAAAAGTGCCCCTTGTGGGCTAGAAAGAAAAAGAGATCAA
AAGGTATTTTCCAAGGAGTGAAAGATGGTAGGGCGCACCCCATGGTCTGT
CCGCTCTCTCCTAAGCTACGTACACGCATCCTCCACGTACGAGCGCATCG
TTTCTACCGTTCCGCGAGTTACAGGAACTTCTCAAAGAACTGTCGGATTA
ACCTCTTCTACGAGTAGATTTCCCAATTTTTGAAAAATGGACAACTGACT
ACGAAACGTCACGAATTGCGCCGCTATTCTGCCATTACTCCTTGGAGAAT
GTCATTCCTATCCATTCTCGTATACTAAGTCGCAGCAACGCTTACTTTCA
ATGTTAGGCAATCATGTATACAGTGCTACACTAGTGATCATCGACAGACA
GGTCATCCTAAGACTCTGTTTCAAACACAGTTATATATTACTGCTGTGTA
AAGCTCAACACACTCCATGCTACGACGTACTGACTACACAGGCATACTTA
TCTATTTCTTAACATGGGGGCAGTGCGGCCCGCACTGCCGATGGTTTGGG
CGACACTAATGACATGGTGTGGACTCTAGGCCACGTCTCCCGCATGGGAG
CTACGTGCCACACTCCCAATACTGTGACAAGTGTTTATCTGTAAGAAGTA
CGACCTGCACTTATCACATGGCACATAGTCGGAAGTGCCCCACAGTTAAC
AGTTCCTAAAGTGTGAGGAGTACTGGTCACACTTCCCATAGGTGCTGGAA
CTATCTATGACTCACGCTCCCAATAGTGTTGGATAACGGGCCATACTTGC
CATACGATAGGAGCTGCGGAAAACCGATGGTGGTATACATGTGTGACCGA
CAGCGCTGGAGGTGTTGCAAGTATGGGCTAATTTGCCTAGATGGACAAAC
GTCGCAAATGGATCACAATTATGGCCACTTGCTGTCAAATTAAAAAGGGG
TCTCTGCATGAAATTTGATTCCGTTGTTGTGGCATACTATTCATGTTAGG
AAATATCGGTCTGTTTCTATCGGGGCTATTGTAGAACGCAAAAGGCTGGA
GGGTAAAGAGTTTCCCTCAGGCCACCGAAGACATGAGGGGAGGACTCAGG
ATTTACTGTTGGAATGGAAATCGGGTTAGGGGGTGCGAAGGTATTGAACC
CCCTCCGCCTTCGCCATGGCCTCCCTGCTTCGTACCGTTTTCGTTTGAGC
GCAGTTCGATTTAACGAAGGCCAAGGACGACCCTAACGTGATGAAGATGC
TGAGGAACGAGTGCACGACCATGATGGCGCTCTCTCATCCCAACATTGTT
CGTCTGCAAGAGGTTTATGTTCATATCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8339:112..2741-

>mRNA_H-paniculata_contig8339.16354.1 ID=mRNA_H-paniculata_contig8339.16354.1|Name=mRNA_H-paniculata_contig8339.16354.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig8339:112..2741- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTATGACTTCACCGGGCCCGTTCTCGGTAAGGGCTCGTTCGCCACCGT
GCTTCGCGTGAGAGATCGCATGTCTGGATCGGAATACGCGGTCAAGCAGG
CAAGTGTATGACTTCACCGGGCCCGTTCTCGGTAAGGGCTCGTTCGCCAC
CGTGCTTCGCGTGAGAGATCGCATGTCTGGATCGGAATACGCGGTCAAGC
AGGCAACGCAGTTCGATTTAACGAAGGCCAAGGACGACCCTAACGTGATG
AAGATGCTGAGGAACGAGTGCACGACCATGATGGCGCTCTCTCATCCCAA
CATTGTTCGTCTGCAAGAGGTTTATGTTCATATCTGACGCAGTTCGATTT
AACGAAGGCCAAGGACGACCCTAACGTGATGAAGATGCTGAGGAACGAGT
GCACGACCATGATGGCGCTCTCTCATCCCAACATTGTTCGTCTGCAAGAG
GTTTATGTTCATATCTGA
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