mRNA_H-paniculata_contig8306.16329.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8306.16329.1
Unique NamemRNA_H-paniculata_contig8306.16329.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8306.16329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8306contigH-paniculata_contig8306:691..1291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size601
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.1281931-UTR-H-paniculata_contig8306:690..9191622931043.1281931-UTR-H-paniculata_contig8306:690..919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8306 691..919 +
1691481563.5928566-UTR-H-paniculata_contig8306:690..9191691481563.5928566-UTR-H-paniculata_contig8306:690..919Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8306 691..919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931043.1448383-CDS-H-paniculata_contig8306:919..12911622931043.1448383-CDS-H-paniculata_contig8306:919..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8306 920..1291 +
1691481563.6054156-CDS-H-paniculata_contig8306:919..12911691481563.6054156-CDS-H-paniculata_contig8306:919..1291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8306 920..1291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8306.16329.1prot_H-paniculata_contig8306.16329.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8306 920..1291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8306.16329.1

>prot_H-paniculata_contig8306.16329.1 ID=prot_H-paniculata_contig8306.16329.1|Name=mRNA_H-paniculata_contig8306.16329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MRQSRRKEISEVSPAFFPSCTQYFPTWHHSWKTLPHRRNDVMTMDDISRP
PRFSANHIFPPIKVEQKKTASTLSFARRIFNYTAGASRSDALRKRRGTVK
SQAQKWPKQGRLPRDQHVIPVDP*
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mRNA from alignment at H-paniculata_contig8306:691..1291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8306.16329.1 ID=mRNA_H-paniculata_contig8306.16329.1|Name=mRNA_H-paniculata_contig8306.16329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=601bp|location=Sequence derived from alignment at H-paniculata_contig8306:691..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTCTGGCTGTGGCACACAACGACGTGGCCATATAAGGGGGCAGCAGGG
ATACGCTATCAGAACAAAAGCGTGTCATCTACGTGTGCTTGGCCTCTCGA
TTGTTGATTACAGTATCCACGCAAAAGAGAACGAATGCCTTCATCGAACA
TTTGAACCCCGTGCTCCTTGATTATTACCCCACGACGAGGAGATTTGCTG
CTGCAGGATGCTGGCTGCTGTATCGAAATATGAGACAGTCTCGACGCAAA
GAAATTTCCGAGGTTTCCCCCGCATTTTTTCCTTCCTGCACGCAGTATTT
CCCAACGTGGCATCATTCATGGAAAACGTTACCCCACCGGAGAAATGATG
TAATGACCATGGATGATATCAGCCGTCCACCAAGGTTTTCGGCGAATCAT
ATTTTTCCCCCAATAAAAGTCGAGCAAAAGAAAACTGCAAGCACCCTTTC
TTTTGCTCGGCGAATTTTCAACTACACAGCTGGAGCTTCTCGCAGTGATG
CTCTACGAAAAAGACGTGGAACGGTAAAATCACAAGCACAAAAATGGCCA
AAACAAGGACGCCTTCCACGCGATCAACACGTCATCCCTGTGGATCCGTA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig8306:691..1291+

>mRNA_H-paniculata_contig8306.16329.1 ID=mRNA_H-paniculata_contig8306.16329.1|Name=mRNA_H-paniculata_contig8306.16329.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig8306:691..1291+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGACAGTCTCGACGCAAAGAAATTTCCGAGGTTTCCCCCGCATTTTT
TCCTTCCTGCACGCAGTATTTCCCAACGTGGCATCATTCATGGAAAACGT
TACCCCACCGGAGAAATGATGTAATGACCATGGATGATATCAGCCGTCCA
CCAAGGTTTTCGGCGAATCATATTTTTCCCCCAATAAAAGTCGAGCAAAA
GAAAACTGCAAGCACCCTTTCTTTTGCTCGGCGAATTTTCAACTACACAG
CTGGAGCTTCTCGCAGTGATGCTCTACGAAAAAGACGTGGAACGGTAAAA
TCACAAGCACAAAAATGGCCAAAACAAGGACGCCTTCCACGCGATCAACA
CGTCATCCCTGTGGATCCGTAGATGAGACAGTCTCGACGCAAAGAAATTT
CCGAGGTTTCCCCCGCATTTTTTCCTTCCTGCACGCAGTATTTCCCAACG
TGGCATCATTCATGGAAAACGTTACCCCACCGGAGAAATGATGTAATGAC
CATGGATGATATCAGCCGTCCACCAAGGTTTTCGGCGAATCATATTTTTC
CCCCAATAAAAGTCGAGCAAAAGAAAACTGCAAGCACCCTTTCTTTTGCT
CGGCGAATTTTCAACTACACAGCTGGAGCTTCTCGCAGTGATGCTCTACG
AAAAAGACGTGGAACGGTAAAATCACAAGCACAAAAATGGCCAAAACAAG
GACGCCTTCCACGCGATCAACACGTCATCCCTGTGGATCCGTAG
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