mRNA_H-paniculata_contig82926.16314.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82926.16314.1
Unique NamemRNA_H-paniculata_contig82926.16314.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig82926.16314.1 vs. uniprot
Match: A0A6H5JQ29_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.970e-23
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 QALSADNVLTALSALLCERPVVVTCSVRSLLSVAVCSLKALLHPLGWHHAYAPLLPSSEV 180
            QALS+DNVL ALSAL+CERPV+VTCSVRSLLS+AV SLKALLHPL WHHAYAPLLP++EV
Sbjct:  439 QALSSDNVLLALSALMCERPVLVTCSVRSLLSLAVSSLKALLHPLDWHHAYAPLLPAAEV 498
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BLAST of mRNA_H-paniculata_contig82926.16314.1 vs. uniprot
Match: D8LDP3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.990e-23
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 QALSADNVLTALSALLCERPVVVTCSVRSLLSVAVCSLKALLHPLGWHHAYAPLLPSSEV 180
            QALS+DNVL ALSAL+CERPV+VTCSVRSLLS+AV SLKALLHPL WHHAYAPLLP++EV
Sbjct:  906 QALSSDNVLLALSALMCERPVLVTCSVRSLLSLAVSSLKALLHPLDWHHAYAPLLPAAEV 965
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82926.16314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ29_9PHAE2.970e-2385.00DENN domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LDP3_ECTSI2.990e-2385.00RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82926contigH-paniculata_contig82926:186..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931040.5198486-CDS-H-paniculata_contig82926:185..3921622931040.5198486-CDS-H-paniculata_contig82926:185..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82926 186..392 +
1691481562.2634878-CDS-H-paniculata_contig82926:185..3921691481562.2634878-CDS-H-paniculata_contig82926:185..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82926 186..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82926.16314.1prot_H-paniculata_contig82926.16314.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82926 186..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82926.16314.1

>prot_H-paniculata_contig82926.16314.1 ID=prot_H-paniculata_contig82926.16314.1|Name=mRNA_H-paniculata_contig82926.16314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
QALSADNVLTALSALLCERPVVVTCSVRSLLSVAVCSLKALLHPLGWHHA
YAPLLPSSEVCKAGRRSWW
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mRNA from alignment at H-paniculata_contig82926:186..392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82926.16314.1 ID=mRNA_H-paniculata_contig82926.16314.1|Name=mRNA_H-paniculata_contig82926.16314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at H-paniculata_contig82926:186..392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGTTAAGCGCCGACAACGTGCTGACAGCGCTGTCGGCGTTGCTGTG
CGAGCGTCCGGTGGTGGTAACGTGTAGCGTGAGAAGCCTACTATCCGTGG
CTGTCTGTTCTCTCAAGGCGCTGCTGCACCCGCTCGGCTGGCATCATGCG
TACGCGCCACTGCTGCCGTCTTCGGAGGTATGCAAGGCTGGGAGGAGATC
GTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig82926:186..392+

>mRNA_H-paniculata_contig82926.16314.1 ID=mRNA_H-paniculata_contig82926.16314.1|Name=mRNA_H-paniculata_contig82926.16314.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig82926:186..392+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGCGTTAAGCGCCGACAACGTGCTGACAGCGCTGTCGGCGTTGCTGTG
CGAGCGTCCGGTGGTGGTAACGTGTAGCGTGAGAAGCCTACTATCCGTGG
CTGTCTGTTCTCTCAAGGCGCTGCTGCACCCGCTCGGCTGGCATCATGCG
TACGCGCCACTGCTGCCGTCTTCGGAGGTATGCAAGGCTGGGAGGAGATC
GTGGTGGCAGGCGTTAAGCGCCGACAACGTGCTGACAGCGCTGTCGGCGT
TGCTGTGCGAGCGTCCGGTGGTGGTAACGTGTAGCGTGAGAAGCCTACTA
TCCGTGGCTGTCTGTTCTCTCAAGGCGCTGCTGCACCCGCTCGGCTGGCA
TCATGCGTACGCGCCACTGCTGCCGTCTTCGGAGGTATGCAAGGCTGGGA
GGAGATCGTGGTGG
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