mRNA_H-paniculata_contig8277.16297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8277.16297.1
Unique NamemRNA_H-paniculata_contig8277.16297.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 6.490e-109
Identity = 163/245 (66.53%), Postives = 192/245 (78.37%), Query Frame = 1
Query:    1 NGGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            NG C TL+DIY SR    G  GPLYP+D     +   +TG WYL S+LY+T  S LVV+G   GGDCD LLL S+P+KF+NLRAHGG L L+ THVESW    +L  G VD +  DGRSY+SAI+EVITDP ETC+GTA  DMGEAR+DII++EVNHLGWYDSESYGIAYKVRGFC D SNPE+F+ V+VTG+ILGS IH  YFGHYS+GHQGGN+S N++H N+GYGFDPHDDSDY+ IHNN V
Sbjct:   78 NGACVTLTDIYESRLDDTGNKGPLYPFDETTLDISDTVTGSWYLESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESW----DLAAGTVDENNEDGRSYLSAISEVITDPAETCDGTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNNEV 318          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FZF9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZF9_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 9.640e-104
Identity = 158/245 (64.49%), Postives = 190/245 (77.55%), Query Frame = 1
Query:    1 NGGCATLSDIYLSRYAAYGFT--GPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNN 729
            NG CAT++DIY SR   Y     GP+YP+D     + +N+TG WYL SSLYVT  + LVV+G   GGDCD LLL S+ +KF+N+RA+GG + L+ THVESW    +L  G VD +Y DGRSY+SAI+EVI +P   C G A  DMGEAR+DII++E+NHLG Y+SESYGIAYKVRGFC D SNPE+FE V VTG+ILGSHIHHLYFGHYS+GHQGGN+S+N VHDNVGYGFDPHDDSDY+ I NN
Sbjct:   68 NGACATMTDIYESRIDTYTGENKGPVYPFDETTGGITNNVTGSWYLGSSLYVTEGARLVVQGLSKGGDCDHLLLASSAEKFINVRAYGGEIMLDGTHVESW----DLLEGTVDENYDDGRSYLSAISEVIINPAMECEGMATNDMGEARMDIIDSEINHLGHYESESYGIAYKVRGFCNDLSNPELFETVGVTGDILGSHIHHLYFGHYSYGHQGGNWSYNTVHDNVGYGFDPHDDSDYVTISNN 308          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 5.030e-103
Identity = 162/265 (61.13%), Postives = 191/265 (72.08%), Query Frame = 1
Query:    1 NGGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNH--------------------LGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            NG C TL+DIY SR    G  GPLYP+D     +   +TG WYL SSLY+T  S LVV+G   GGDCD LLL S+P+KF+N+RAHGG L L+ THVESW    +L  G VD +  DGRSY+SAI+EVITDP ETC+GTA  DMGEAR+DII++EVN                     LGWYDSESYGI+YKVRGFC D SNPE+F+ V+VTG+ILGS IH  YFGHYS+GHQGGN+S N++H N+GYGFDPHDDSDYL IHNN V
Sbjct:   38 NGACVTLTDIYESRSDDSGNKGPLYPFDETALDISDTVTGSWYLESSLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINVRAHGGELMLDGTHVESW----DLAAGTVDENNEDGRSYLSAISEVITDPTETCDGTAKNDMGEARMDIIDSEVNRTTQTSHSAPLTSRLPQYKTDLGWYDSESYGISYKVRGFCTDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYLTIHNNEV 298          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 8.390e-80
Identity = 135/244 (55.33%), Postives = 173/244 (70.90%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGC TL++I+ S       + PLYP +   N  V  +TG W L   LYVT    L V GTD GGDCD L L S    F+NLRAHGG+     T V SW    N G+G VD ++ DGRSYISA++EVI DP +TCNGTA ++MGEAR+D+I++E+  LG+Y+SESYG+ +KVRGFCID SN ++F+ V V G+++ S+IH  YFGHYS+GHQGGN+S+N++H+NV YGFDPHDDSDYL I  N V
Sbjct:  377 GGCFTLTEIWESG------SRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSW----NEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVEYGFDPHDDSDYLHIVGNDV 610          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 4.200e-78
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGC TL  I+ SR       GPLY  D  +  +  + TG W L   LYV    TL V G++ GGD D L L ST + F+NLRAHGG+L   ST V SW  + N      D D TDGRSYISAI+E+ITD  ETC G A   MGEAR+DI ++E+ +LG++DSESYG+ +KVRGFC D SNPE+F+DV V GN+  S IHH+ FG Y++GHQ G++  N++HDN GYGFDPHDDSD+L IH+N V
Sbjct:   67 GGCVTLGQIWESRAGK----GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 302          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 7.180e-77
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGC TL  I+ SR       GPLY  D  +  +  + TG W L   LYV    TL V G++ GGD D L L ST + F+NLRAHGG+L   ST V SW  + N      D D TDGRSYISAI+E+ITD  ETC G A   MGEAR+DI ++E+ +LG++DSESYG+ +KVRGFC D SNPE+F+DV V GN+  S IHH+ FG Y++GHQ G++  N++HDN GYGFDPHDDSD+L IH+N V
Sbjct:   67 GGCVTLGQIWESRAGK----GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 302          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 3.130e-76
Identity = 133/244 (54.51%), Postives = 162/244 (66.39%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGCATL  I+ SR        PLY  D  +  +    TG W L   LYV    TL V GTD GGD D L L ST + ++NLRAHGG+L    T V SW  + N      D D TDGRSYISA++E++TD  ETC G A   MGEAR+DI N+E+ +LG+ DSESYG+ +KVRGFC D SNPEIF+DV V GN+  S IHHL FG Y++GHQ G++  N++HDN GYGFDPHDDSD+L IH+N V
Sbjct:   71 GGCATLGQIWESRAGK----APLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTN----SPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 306          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.600e-74
Identity = 130/244 (53.28%), Postives = 158/244 (64.75%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGC TL  I+ +R        PLY  D  +     N TG W L   LYV    TL V GT  GGD D L L ST   ++NLRAHGG+L    T V SW  + N      D D TDGRSYISAI+E+ITD  ETC G A   MGEAR+DI N+E+ +LG+ DSESYG+ +KVRGFC D SNP IF++V V GN+  S IHH+ FG Y++GHQ G++  N++HDN GYGFDPHDDSD+L IH+N V
Sbjct:   70 GGCVTLGQIWENRAGK----APLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 305          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 240 bits (613), Expect = 3.330e-72
Identity = 126/244 (51.64%), Postives = 162/244 (66.39%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGC TL  I+  +        PLY  D+ +  +  + TG W L   L+V    TL V GT  GGD D L L ST   F+NLRAHGG+L   ST V +W  + N    G D D  DGRSY+SA++EVITD  +TCNG A  +MGEAR+DI ++E+ +LG++ SESYG+ +KVRGFC+D SN ++FEDV V GNI  S IHH  FG Y++GHQ G++  N++HDN GYGFDPHDDSD+L IH+N V
Sbjct:   64 GGCVTLEQIWEHQRGE----APLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSIN----GPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 299          
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 2.100e-70
Identity = 122/244 (50.00%), Postives = 160/244 (65.57%), Query Frame = 1
Query:    4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
            GGC TL  I+  +        PLY  D  +  +  + TG W L   +YV    TL V G   GGD D L L ST   F++LRA+GG+L   ST V +W  + N      D D +DGRSYISA++EVITD  +TCNG A  +MGEAR+DI N+E+ +LG++ +E+YG+ +KVRGFC+D  NPE+F+DV V GNI  S IHH  FG Y++GHQ G++  N++HDN GYGFDPHDDSD+L IH+N V
Sbjct:   38 GGCVTLEQIWEQQVDG----SPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNA----PDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZF8_ECTSI6.490e-10966.53Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FZF9_ECTSI9.640e-10464.49Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5KBD3_9PHAE5.030e-10361.13MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FMJ0_ECTSI8.390e-8055.33Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI4.200e-7854.10Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI7.180e-7754.10Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI3.130e-7654.51Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JU98_9PHAE1.600e-7453.28MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
Q7XAJ7_9PHAE3.330e-7251.64Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAJ8_9PHAE2.100e-7050.00Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8277contigH-paniculata_contig8277:6763..9800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.4
Seed ortholog evalue4.8e-54
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons5
Model size957
Cds size957
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8277.16297.1prot_H-paniculata_contig8277.16297.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8277 6763..9800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.77791-CDS-H-paniculata_contig8277:6762..71181622931038.77791-CDS-H-paniculata_contig8277:6762..7118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 6763..7118 +
1691481561.5538127-CDS-H-paniculata_contig8277:6762..71181691481561.5538127-CDS-H-paniculata_contig8277:6762..7118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 6763..7118 +
1622931038.7913737-CDS-H-paniculata_contig8277:7952..80651622931038.7913737-CDS-H-paniculata_contig8277:7952..8065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 7953..8065 +
1691481561.5721245-CDS-H-paniculata_contig8277:7952..80651691481561.5721245-CDS-H-paniculata_contig8277:7952..8065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 7953..8065 +
1622931038.8198075-CDS-H-paniculata_contig8277:8437..86281622931038.8198075-CDS-H-paniculata_contig8277:8437..8628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 8438..8628 +
1691481561.5838137-CDS-H-paniculata_contig8277:8437..86281691481561.5838137-CDS-H-paniculata_contig8277:8437..8628Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 8438..8628 +
1622931038.839461-CDS-H-paniculata_contig8277:9136..92361622931038.839461-CDS-H-paniculata_contig8277:9136..9236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 9137..9236 +
1691481561.592136-CDS-H-paniculata_contig8277:9136..92361691481561.592136-CDS-H-paniculata_contig8277:9136..9236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 9137..9236 +
1622931038.8665383-CDS-H-paniculata_contig8277:9603..98001622931038.8665383-CDS-H-paniculata_contig8277:9603..9800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 9604..9800 +
1691481561.6054113-CDS-H-paniculata_contig8277:9603..98001691481561.6054113-CDS-H-paniculata_contig8277:9603..9800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8277 9604..9800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8277.16297.1

>prot_H-paniculata_contig8277.16297.1 ID=prot_H-paniculata_contig8277.16297.1|Name=mRNA_H-paniculata_contig8277.16297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
NGGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYV
TTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWG
LNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDI
INTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIH
HLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHVYNNGW
HGIIASKRCNHVSIQNNHVHDNGRNGLMLHRSCDYATVKNNTAYGNGDAG
LALFESSFCEISDNTFYHN
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mRNA from alignment at H-paniculata_contig8277:6763..9800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8277.16297.1 ID=mRNA_H-paniculata_contig8277.16297.1|Name=mRNA_H-paniculata_contig8277.16297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3038bp|location=Sequence derived from alignment at H-paniculata_contig8277:6763..9800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGAGGGTGCGCGACCCTCTCCGACATATACCTGAGCCGCTACGCTGC ATACGGCTTTACGGGACCCCTCTATCCGTACGACGCGGGGAACAACACAC TCGTGCACAACATAACGGGGCAGTGGTACCTCAACTCGAGTCTGTACGTG ACCACCGACAGCACGCTGGTCGTACGAGGGACCGACGTCGGCGGCGACTG CGATCGGCTGTTGCTTACGAGCACTCCGCAAAAGTTCTTGAACCTCCGCG CGCACGGAGGAAACTTGTACTTGGAAAGCACCCATGTCGAGTCTTGGGGA TTGAACAACAACCTCGGTCGGGGCGGAGTCGATCTGGATTATACGGATGG CAGAAGGTGGGCTGGTGCATTATGAAGAGTCGGGGTAGGTGCGTTGTGCA GAGTAGGTTATGGGTCTTTCGCGACCGATACTACTGCAGCAGTTTACGGG TGAACTTGCGAGGATGATAGACGAGATGATTAGTTTGTCGGTCCTACCGT GGGTTATCCATGTTCAGAACGCCATTCGTGTTCTATTTCGTATTTGTTAT TCCCTAATTATACCTGATGTGCAGAGTCATCGGTATTATATTCGTCGTAA ACGTTTTATCTACATGTATGTATACCAGCGTACAGTATAAGGTGCGTACT CAAGCTTACCGGGGTATAGGGTATCACTTTAGTACGCCTCTCAATATACT ACCCGAGACTTGAATATTCTCAGTACGTTTTTCATAATACCCGGGTATAG GGTATTGTATACCTTACTGAACACACCCTTGGTACATTCGAGTGAACATC GATATTTTCTCTTTCTTTAATTTCGCAGCACTCGATTTTGTAGTTTTTCA CATAAAGCAGTCGTGACAACTGGCAGGTGAAATGCGCCTCTCACACATGA CCAATTATTCGGCCAACTGGGCTCAGAGATTTCATATTTGCCAACGGCGA AGAAGTCTAAAAACCGGTCATGAAAATTACACATGTACATGTTGCCGGAC AGGTAAAAAAATGAGGTTTATAGTAATAAAGATGAATGCTGGGCACCTAC CTTTGTCTCTTCTTTTCTCTCTGTCTGTCTGTCTATCTATCTCCAGACGC GCTCCCAATACACCTCTTTTCGATTCTGTCCCACGTTGCCTGTCCCTCTC CCTCAAAACTCTCCTATCCCGATAAATATTCGCCACACAGCTATATCAGC GCCATCACCGAGGTGATCACCGACCCCTTGGAAACGTGCAACGGTACAGC TGGCACCGACATGGGGGAGGCCAGGCTTGACATCATCAACACGGAAGTAA ACCGTAAGTCATTTTTTCCAACCAAGATCCGTGTGATCAAGTATATGTGT GGATATTGCAATTCGTTGCATTTTTTGTTCATCTTCTCCACCAGGTCGTT ACACCGTATCGAGCCGTCGGTCGATTGGAGCAAACAAGTCTTCCCTCCAT TTTTTTTGCCTCTGGTATCTAACACACGTACAAACACACATACATATATT TCCTTCCTTGAATCACCCCGCCGTCGTCAATGGTCCAACACCTACGGTAT ACCTCGTACAAGACATGGGTTTGCCCTCCCTGTTGATCTCGTATTTTTTC TGATGAGAGGAACAATTGAGCATTGGATTCAGCTGCATAACCTCTCCCTT CCCCCCCGGCCCAACCATCGACCAGACCTCGGGTGGTACGACAGTGAATC TTATGGGATTGCCTACAAAGTGCGAGGTTTTTGCATAGATCACTCGAACC CGGAGATCTTCGAAGACGTCGCGGTGACTGGCAATATTCTGGGATCACAC ATCCACCATCTGTACTTTGGACATTACTCCTTCGGGCACCAGGGAGGCAA TTTCAGTTTCAACGAGGTTTGTACATCAATATTTTTGCGTGCAATTCTCT CCGTGCTGTGTAGGTAACTTTTTGTATTTGTAGCAGTGAGATTTTAAACG ATGGTACAGCTGAAAATCTCGATTAGGTAAGGTACAGACAAGAAGTTGCG TGGGCAAATCCCTGCTCGGGCTTTGACGGCGCTATCGGTTCCAGATGTCA ACGTATTTCGTGAACATGCACTTATAGAAAACAATCCCCCACCAAGTGTG AACGATGTATAAGAATTTCGGAATGAATTTTTTGGATTTAAGAGAAGTCT GCTTTTTTGCAATATTGCTGCTAAGCACACCCAGTAGTGAACACGCGAGA AAACTGATATTATGTTGTTTGCCTTTTGCGGTGTCACTTATTTCAGTTCT TGAAGGGAATGCAACCATGGTTAGTTCGCGGGTTCCTGCTGTCATAATCC AAAATCAGAAAATAGTTCAACCGTAATAATAACTGCGCTACATCTTTGGT CTCATTTTCGTCAATTTTTCCCAGGTTCACGACAACGTCGGCTACGGTTT CGACCCACACGATGACAGCGACTACCTCTTCATCCACAACAACCATGTTT ACAACAACGGCTGGCACGGAATCAGTGAGTCAACGTTTGTGCTCTTGGTA CCTGCCGCACTATGTGTCGAGGTAAAGATGGGGTTATGAAAGGCGAACCT ATCATCTCTCCCCATGCTCATGTGGCGCTTTTGAAGGCAGCAAATCCAAT CAGCTCACGCGCTTTACAGTTTGTCTCCCCCGGTACGCGCTTAAAGGAGC AACGTGTATTGTTGTTTTCACGTTTTATCTCTTCCGTGACAACACCTACA TGCTCTTGACCGACCACAGAATCTTGATATTAACAACCAACCCCCCCTCC ATCCCTCCATCCACCCTCCCACCTACTGCCCTTGCCTGTCCCCAATGTTT CCCCTTGATCAACCTATAAAATACCCCCACGACTGAAACAGTCGCATCGA AAAGGTGCAACCATGTTTCCATCCAGAACAACCATGTGCACGATAATGGA AGGAACGGGCTGATGCTCCACCGTAGCTGCGACTATGCTACGGTGAAGAA CAACACGGCGTACGGAAACGGCGACGCTGGGCTTGCTCTCTTCGAGAGCT CCTTCTGTGAGATCTCCGACAATACGTTCTACCACAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig8277:6763..9800+

>mRNA_H-paniculata_contig8277.16297.1 ID=mRNA_H-paniculata_contig8277.16297.1|Name=mRNA_H-paniculata_contig8277.16297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig8277:6763..9800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGAGGGTGCGCGACCCTCTCCGACATATACCTGAGCCGCTACGCTGC
ATACGGCTTTACGGGACCCCTCTATCCGTACGACGCGGGGAACAACACAC
TCGTGCACAACATAACGGGGCAGTGGTACCTCAACTCGAGTCTGTACGTG
ACCACCGACAGCACGCTGGTCGTACGAGGGACCGACGTCGGCGGCGACTG
CGATCGGCTGTTGCTTACGAGCACTCCGCAAAAGTTCTTGAACCTCCGCG
CGCACGGAGGAAACTTGTACTTGGAAAGCACCCATGTCGAGTCTTGGGGA
TTGAACAACAACCTCGGTCGGGGCGGAGTCGATCTGGATTATACGGATGG
CAGAAGAACGGAGGGTGCGCGACCCTCTCCGACATATACCTGAGCCGCTA
CGCTGCATACGGCTTTACGGGACCCCTCTATCCGTACGACGCGGGGAACA
ACACACTCGTGCACAACATAACGGGGCAGTGGTACCTCAACTCGAGTCTG
TACGTGACCACCGACAGCACGCTGGTCGTACGAGGGACCGACGTCGGCGG
CGACTGCGATCGGCTGTTGCTTACGAGCACTCCGCAAAAGTTCTTGAACC
TCCGCGCGCACGGAGGAAACTTGTACTTGGAAAGCACCCATGTCGAGTCT
TGGGGATTGAACAACAACCTCGGTCGGGGCGGAGTCGATCTGGATTATAC
GGATGGCAGAAGCTATATCAGCGCCATCACCGAGGTGATCACCGACCCCT
TGGAAACGTGCAACGGTACAGCTGGCACCGACATGGGGGAGGCCAGGCTT
GACATCATCAACACGGAAGTAAACCCTATATCAGCGCCATCACCGAGGTG
ATCACCGACCCCTTGGAAACGTGCAACGGTACAGCTGGCACCGACATGGG
GGAGGCCAGGCTTGACATCATCAACACGGAAGTAAACCACCTCGGGTGGT
ACGACAGTGAATCTTATGGGATTGCCTACAAAGTGCGAGGTTTTTGCATA
GATCACTCGAACCCGGAGATCTTCGAAGACGTCGCGGTGACTGGCAATAT
TCTGGGATCACACATCCACCATCTGTACTTTGGACATTACTCCTTCGGGC
ACCAGGGAGGCAATTTCAGTTTCAACGAGACCTCGGGTGGTACGACAGTG
AATCTTATGGGATTGCCTACAAAGTGCGAGGTTTTTGCATAGATCACTCG
AACCCGGAGATCTTCGAAGACGTCGCGGTGACTGGCAATATTCTGGGATC
ACACATCCACCATCTGTACTTTGGACATTACTCCTTCGGGCACCAGGGAG
GCAATTTCAGTTTCAACGAGGTTCACGACAACGTCGGCTACGGTTTCGAC
CCACACGATGACAGCGACTACCTCTTCATCCACAACAACCATGTTTACAA
CAACGGCTGGCACGGAATCAGTTCACGACAACGTCGGCTACGGTTTCGAC
CCACACGATGACAGCGACTACCTCTTCATCCACAACAACCATGTTTACAA
CAACGGCTGGCACGGAATCATCGCATCGAAAAGGTGCAACCATGTTTCCA
TCCAGAACAACCATGTGCACGATAATGGAAGGAACGGGCTGATGCTCCAC
CGTAGCTGCGACTATGCTACGGTGAAGAACAACACGGCGTACGGAAACGG
CGACGCTGGGCTTGCTCTCTTCGAGAGCTCCTTCTGTGAGATCTCCGACA
ATACGTTCTACCACAACTCGCATCGAAAAGGTGCAACCATGTTTCCATCC
AGAACAACCATGTGCACGATAATGGAAGGAACGGGCTGATGCTCCACCGT
AGCTGCGACTATGCTACGGTGAAGAACAACACGGCGTACGGAAACGGCGA
CGCTGGGCTTGCTCTCTTCGAGAGCTCCTTCTGTGAGATCTCCGACAATA
CGTTCTACCACAAC
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