mRNA_H-paniculata_contig8277.16297.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI) HSP 1 Score: 337 bits (863), Expect = 6.490e-109 Identity = 163/245 (66.53%), Postives = 192/245 (78.37%), Query Frame = 1
Query: 1 NGGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
NG C TL+DIY SR G GPLYP+D + +TG WYL S+LY+T S LVV+G GGDCD LLL S+P+KF+NLRAHGG L L+ THVESW +L G VD + DGRSY+SAI+EVITDP ETC+GTA DMGEAR+DII++EVNHLGWYDSESYGIAYKVRGFC D SNPE+F+ V+VTG+ILGS IH YFGHYS+GHQGGN+S N++H N+GYGFDPHDDSDY+ IHNN V
Sbjct: 78 NGACVTLTDIYESRLDDTGNKGPLYPFDETTLDISDTVTGSWYLESTLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINLRAHGGELMLDGTHVESW----DLAAGTVDENNEDGRSYLSAISEVITDPAETCDGTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNNEV 318
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FZF9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZF9_ECTSI) HSP 1 Score: 323 bits (828), Expect = 9.640e-104 Identity = 158/245 (64.49%), Postives = 190/245 (77.55%), Query Frame = 1
Query: 1 NGGCATLSDIYLSRYAAYGFT--GPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNN 729
NG CAT++DIY SR Y GP+YP+D + +N+TG WYL SSLYVT + LVV+G GGDCD LLL S+ +KF+N+RA+GG + L+ THVESW +L G VD +Y DGRSY+SAI+EVI +P C G A DMGEAR+DII++E+NHLG Y+SESYGIAYKVRGFC D SNPE+FE V VTG+ILGSHIHHLYFGHYS+GHQGGN+S+N VHDNVGYGFDPHDDSDY+ I NN
Sbjct: 68 NGACATMTDIYESRIDTYTGENKGPVYPFDETTGGITNNVTGSWYLGSSLYVTEGARLVVQGLSKGGDCDHLLLASSAEKFINVRAYGGEIMLDGTHVESW----DLLEGTVDENYDDGRSYLSAISEVIINPAMECEGMATNDMGEARMDIIDSEINHLGHYESESYGIAYKVRGFCNDLSNPELFETVGVTGDILGSHIHHLYFGHYSYGHQGGNWSYNTVHDNVGYGFDPHDDSDYVTISNN 308
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: A0A6H5KBD3_9PHAE (MEP17 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD3_9PHAE) HSP 1 Score: 321 bits (822), Expect = 5.030e-103 Identity = 162/265 (61.13%), Postives = 191/265 (72.08%), Query Frame = 1
Query: 1 NGGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNH--------------------LGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
NG C TL+DIY SR G GPLYP+D + +TG WYL SSLY+T S LVV+G GGDCD LLL S+P+KF+N+RAHGG L L+ THVESW +L G VD + DGRSY+SAI+EVITDP ETC+GTA DMGEAR+DII++EVN LGWYDSESYGI+YKVRGFC D SNPE+F+ V+VTG+ILGS IH YFGHYS+GHQGGN+S N++H N+GYGFDPHDDSDYL IHNN V
Sbjct: 38 NGACVTLTDIYESRSDDSGNKGPLYPFDETALDISDTVTGSWYLESSLYITEGSRLVVQGLSKGGDCDHLLLASSPEKFINVRAHGGELMLDGTHVESW----DLAAGTVDENNEDGRSYLSAISEVITDPTETCDGTAKNDMGEARMDIIDSEVNRTTQTSHSAPLTSRLPQYKTDLGWYDSESYGISYKVRGFCTDLSNPELFDSVSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYLTIHNNEV 298
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FMJ0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ0_ECTSI) HSP 1 Score: 266 bits (679), Expect = 8.390e-80 Identity = 135/244 (55.33%), Postives = 173/244 (70.90%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGC TL++I+ S + PLYP + N V +TG W L LYVT L V GTD GGDCD L L S F+NLRAHGG+ T V SW N G+G VD ++ DGRSYISA++EVI DP +TCNGTA ++MGEAR+D+I++E+ LG+Y+SESYG+ +KVRGFCID SN ++F+ V V G+++ S+IH YFGHYS+GHQGGN+S+N++H+NV YGFDPHDDSDYL I N V
Sbjct: 377 GGCFTLTEIWESG------SRPLYPLEPATNERVDYVTGVWLLTEELYVTDGVILQVHGTDRGGDCDELRLLSDETTFINLRAHGGSFSFLGTKVVSW----NEGKGTVDTNHEDGRSYISAVSEVIYDPNQTCNGTAKSEMGEARMDVIDSEIAFLGYYESESYGLTWKVRGFCIDKSNLDVFDFVNVYGDMINSNIHDNYFGHYSYGHQGGNWSYNKMHENVEYGFDPHDDSDYLHIVGNDV 610
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 253 bits (645), Expect = 4.200e-78 Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGC TL I+ SR GPLY D + + + TG W L LYV TL V G++ GGD D L L ST + F+NLRAHGG+L ST V SW + N D D TDGRSYISAI+E+ITD ETC G A MGEAR+DI ++E+ +LG++DSESYG+ +KVRGFC D SNPE+F+DV V GN+ S IHH+ FG Y++GHQ G++ N++HDN GYGFDPHDDSD+L IH+N V
Sbjct: 67 GGCVTLGQIWESRAGK----GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 302
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 253 bits (645), Expect = 7.180e-77 Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGC TL I+ SR GPLY D + + + TG W L LYV TL V G++ GGD D L L ST + F+NLRAHGG+L ST V SW + N D D TDGRSYISAI+E+ITD ETC G A MGEAR+DI ++E+ +LG++DSESYG+ +KVRGFC D SNPE+F+DV V GN+ S IHH+ FG Y++GHQ G++ N++HDN GYGFDPHDDSD+L IH+N V
Sbjct: 67 GGCVTLGQIWESRAGK----GPLYAVDPDSGNVSTSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFINLRAHGGSLDFVSTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 302
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 251 bits (641), Expect = 3.130e-76 Identity = 133/244 (54.51%), Postives = 162/244 (66.39%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGCATL I+ SR PLY D + + TG W L LYV TL V GTD GGD D L L ST + ++NLRAHGG+L T V SW + N D D TDGRSYISA++E++TD ETC G A MGEAR+DI N+E+ +LG+ DSESYG+ +KVRGFC D SNPEIF+DV V GN+ S IHHL FG Y++GHQ G++ N++HDN GYGFDPHDDSD+L IH+N V
Sbjct: 71 GGCATLGQIWESRAGK----APLYAVDPDSGDVSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETYINLRAHGGSLDFVGTKVFSWDTSTN----SPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 306
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE) HSP 1 Score: 241 bits (616), Expect = 1.600e-74 Identity = 130/244 (53.28%), Postives = 158/244 (64.75%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGC TL I+ +R PLY D + N TG W L LYV TL V GT GGD D L L ST ++NLRAHGG+L T V SW + N D D TDGRSYISAI+E+ITD ETC G A MGEAR+DI N+E+ +LG+ DSESYG+ +KVRGFC D SNP IF++V V GN+ S IHH+ FG Y++GHQ G++ N++HDN GYGFDPHDDSD+L IH+N V
Sbjct: 70 GGCVTLGQIWENRAGK----APLYAVDPESGNESENETGTWLLTEELYVEDGITLKVYGTGEGGDADELRLLSTTDTYINLRAHGGSLDFVGTKVFSWDTSTN----SPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPGIFDEVNVYGNMYDSDIHHMRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 305
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE) HSP 1 Score: 240 bits (613), Expect = 3.330e-72 Identity = 126/244 (51.64%), Postives = 162/244 (66.39%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGC TL I+ + PLY D+ + + + TG W L L+V TL V GT GGD D L L ST F+NLRAHGG+L ST V +W + N G D D DGRSY+SA++EVITD +TCNG A +MGEAR+DI ++E+ +LG++ SESYG+ +KVRGFC+D SN ++FEDV V GNI S IHH FG Y++GHQ G++ N++HDN GYGFDPHDDSD+L IH+N V
Sbjct: 64 GGCVTLEQIWEHQRGE----APLYAVDSKSGDISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTFINLRAHGGSLDFLSTKVFAWDTSIN----GPDRDEEDGRSYVSAVSEVITDDSQTCNGRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 299
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE) HSP 1 Score: 235 bits (599), Expect = 2.100e-70 Identity = 122/244 (50.00%), Postives = 160/244 (65.57%), Query Frame = 1
Query: 4 GGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVTTDSTLVVRGTDVGGDCDRLLLTSTPQKFLNLRAHGGNLYLESTHVESWGLNNNLGRGGVDLDYTDGRSYISAITEVITDPLETCNGTAGTDMGEARLDIINTEVNHLGWYDSESYGIAYKVRGFCIDHSNPEIFEDVAVTGNILGSHIHHLYFGHYSFGHQGGNFSFNEVHDNVGYGFDPHDDSDYLFIHNNHV 735
GGC TL I+ + PLY D + + + TG W L +YV TL V G GGD D L L ST F++LRA+GG+L ST V +W + N D D +DGRSYISA++EVITD +TCNG A +MGEAR+DI N+E+ +LG++ +E+YG+ +KVRGFC+D NPE+F+DV V GNI S IHH FG Y++GHQ G++ N++HDN GYGFDPHDDSD+L IH+N V
Sbjct: 38 GGCVTLEQIWEQQVDG----SPLYAVDPKSGDVSRSATGTWLLTEEMYVEDGITLQVHGISAGGDADELRLLSTSDTFIHLRAYGGSLDFLSTKVFAWDTSKNA----PDQDESDGRSYISAVSEVITDDRQTCNGRAKNNMGEARMDIENSEMAYLGYHGTETYGLTWKVRGFCVDKGNPELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEV 273 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8277.16297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8277.16297.1 >prot_H-paniculata_contig8277.16297.1 ID=prot_H-paniculata_contig8277.16297.1|Name=mRNA_H-paniculata_contig8277.16297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp NGGCATLSDIYLSRYAAYGFTGPLYPYDAGNNTLVHNITGQWYLNSSLYVback to top mRNA from alignment at H-paniculata_contig8277:6763..9800+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8277.16297.1 ID=mRNA_H-paniculata_contig8277.16297.1|Name=mRNA_H-paniculata_contig8277.16297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3038bp|location=Sequence derived from alignment at H-paniculata_contig8277:6763..9800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8277:6763..9800+ >mRNA_H-paniculata_contig8277.16297.1 ID=mRNA_H-paniculata_contig8277.16297.1|Name=mRNA_H-paniculata_contig8277.16297.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig8277:6763..9800+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |