mRNA_H-paniculata_contig82361.16256.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig82361.16256.1
Unique NamemRNA_H-paniculata_contig82361.16256.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A6G6D7A2_ECTSI (ABC transporter domain-containing protein n=9 Tax=Ectocarpales TaxID=2877 RepID=A0A6G6D7A2_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 3.100e-84
Identity = 127/136 (93.38%), Postives = 132/136 (97.06%), Query Frame = 1
Query:    1 ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTVTN 408
            ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSIS+TIN LM+NKNKS+ILITHYKRLLEYIKPD+IHVMQDGQIVKTG A LANLLEEKGYDWLK +TN
Sbjct:  122 ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISKTINILMENKNKSIILITHYKRLLEYIKPDFIHVMQDGQIVKTGDATLANLLEEKGYDWLKPITN 257          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A8F0JYB8_MACPY (ABC transporter domain-containing protein n=30 Tax=Laminariales TaxID=2886 RepID=A0A8F0JYB8_MACPY)

HSP 1 Score: 246 bits (629), Expect = 1.420e-80
Identity = 123/135 (91.11%), Postives = 129/135 (95.56%), Query Frame = 1
Query:    1 ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTVT 405
             NPLFFYELLREKLKMV LDESFISRNVNEGFSGGEKKRNEILQFALLDS LGILDETDSGLDIDALKSISETINTLM+NK+KSVILITHYKRLLEYI+PD+IHVMQDGQI+KTG A LANLLEEKGYDWLK V+
Sbjct:  123 VNPLFFYELLREKLKMVKLDESFISRNVNEGFSGGEKKRNEILQFALLDSKLGILDETDSGLDIDALKSISETINTLMKNKSKSVILITHYKRLLEYIRPDFIHVMQDGQIIKTGDASLANLLEEKGYDWLKPVS 257          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A8F0JZQ3_9PHAE (ABC transporter domain-containing protein n=2 Tax=Phaeophyceae TaxID=2870 RepID=A0A8F0JZQ3_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 6.690e-79
Identity = 121/135 (89.63%), Postives = 125/135 (92.59%), Query Frame = 1
Query:    1 ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTVT 405
             NPLFFYELLREKL MV LDESFISRNVNEGFSGGEKKRNEILQFALLDS LGILDETDSGLDIDALKSISETIN LM+ KNKS+ILITHYKRLLEYIKPD+IHVMQDG IVKTG A LAN+LEEKGYDWLK VT
Sbjct:  123 VNPLFFYELLREKLSMVKLDESFISRNVNEGFSGGEKKRNEILQFALLDSKLGILDETDSGLDIDALKSISETINVLMEKKNKSIILITHYKRLLEYIKPDFIHVMQDGAIVKTGDASLANILEEKGYDWLKPVT 257          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A2R4QQ20_9PHAE (Iron-sulfur cluster formation ABC transporter ATP-binding subunit n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ20_9PHAE)

HSP 1 Score: 239 bits (609), Expect = 1.560e-77
Identity = 115/135 (85.19%), Postives = 128/135 (94.81%), Query Frame = 1
Query:    1 ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTVT 405
             NPLFFYELLR+KLKMV LDESFISRNVNEGFSGGEKKRNEILQFALLDS LGILDETDSGLDIDALKSISETINT+++ +NKS+ILITHYKRLLEYIKPD+IHVM DGQI+KTG +++ANLLEEKGYDW+K +T
Sbjct:  123 VNPLFFYELLRKKLKMVKLDESFISRNVNEGFSGGEKKRNEILQFALLDSQLGILDETDSGLDIDALKSISETINTIIKTENKSIILITHYKRLLEYIKPDFIHVMDDGQIIKTGDSNIANLLEEKGYDWIKNIT 257          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A120HYF8_9PHAE (SufC n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A120HYF8_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 2.070e-72
Identity = 109/132 (82.58%), Postives = 123/132 (93.18%), Query Frame = 1
Query:    1 ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLK 396
             NPL FYEL++EKLKMV LDE FISRNVNEGFSGGEKKRNEILQFALLDS +GILDETDSGLDIDALKSISETINTL++ KNKS+ILITHYKRLLEYIKPD+IH+M DG+IVKTG + +A++LEEKGYDW+K
Sbjct:  123 VNPLTFYELVKEKLKMVKLDERFISRNVNEGFSGGEKKRNEILQFALLDSKVGILDETDSGLDIDALKSISETINTLIKKKNKSIILITHYKRLLEYIKPDFIHIMDDGKIVKTGDSKIADILEEKGYDWIK 254          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A8E6D6C7_9PHAE (Iron-sulfur cluster formation ABC transporter n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D6C7_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.230e-69
Identity = 106/133 (79.70%), Postives = 122/133 (91.73%), Query Frame = 1
Query:    4 NPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTV 402
            +PL F+ +++EKL+M+ +D SF+ RN+NEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETIN LM NK KS+ILITHYKRLLEYIKPD+IHVMQDG IVKTG ADLAN+LEE+GY+WLK +
Sbjct:  124 DPLDFHMIMQEKLEMIKMDPSFLQRNLNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINQLMLNKEKSIILITHYKRLLEYIKPDFIHVMQDGIIVKTGNADLANILEEQGYEWLKQL 256          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A8F0F7B5_9PHAE (ABC transporter domain-containing protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7B5_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.030e-66
Identity = 102/133 (76.69%), Postives = 118/133 (88.72%), Query Frame = 1
Query:    4 NPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTV 402
            N L F  LL EK++MV L++SF+SRNVNEGFSGGEKKRNEILQFA+LDS +GILDETDSGLDIDALKSIS++IN LM  KNKS+ILITHYKRLLEY+KPD++HVMQDG+I+KTG   LANLLEEKGYDWL  +
Sbjct:  122 NTLEFTNLLLEKMRMVKLEKSFLSRNVNEGFSGGEKKRNEILQFAVLDSKIGILDETDSGLDIDALKSISDSINQLMLKKNKSIILITHYKRLLEYVKPDFVHVMQDGKIIKTGNVGLANLLEEKGYDWLNPI 254          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A2I4Q2M5_9PHAE (ABC transporter domain-containing protein n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2M5_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 5.440e-63
Identity = 101/131 (77.10%), Postives = 112/131 (85.50%), Query Frame = 1
Query:    4 NPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWLK 396
            N L F  LL EKLK+V LD++F++RNVNEGFSGGEKKRNEI QFA+LDS L ILDETDSGLDIDALKSIS  IN LM  K KS+ILITHYKRLLEYIKPD+IHVM +G+I+KTG A LAN LEEKGYDWLK
Sbjct:  122 NSLEFTSLLLEKLKLVKLDKNFLARNVNEGFSGGEKKRNEIFQFAVLDSELAILDETDSGLDIDALKSISNAINELMAKKAKSIILITHYKRLLEYIKPDFIHVMHNGKIIKTGDASLANTLEEKGYDWLK 252          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: B7T1Z2_VAULI (ABC ATPase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1Z2_VAULI)

HSP 1 Score: 195 bits (496), Expect = 1.710e-60
Identity = 98/129 (75.97%), Postives = 114/129 (88.37%), Query Frame = 1
Query:    7 PLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWL 393
            PL F E+L EKLK+VNLD  F+SRNVNEGFSGGEKKRNEILQFALL+S LGILDE DSGLDIDALK+ISE +N L++ K+KS+ILITHYKRLLEYIKPD+IHVM +G+I+KTG   LANLLE+ GY+WL
Sbjct:  122 PLKFLEVLVEKLKLVNLDPIFLSRNVNEGFSGGEKKRNEILQFALLNSELGILDEMDSGLDIDALKTISEAVN-LLKTKDKSIILITHYKRLLEYIKPDFIHVMMNGKIIKTGDITLANLLEKNGYEWL 249          
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Match: A0A7S6UA23_9STRA (Ycf16 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA23_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.140e-60
Identity = 95/130 (73.08%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    4 NPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDSILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKPDYIHVMQDGQIVKTGGADLANLLEEKGYDWL 393
            +P+ F ++L+ K+ +V +DE+ ISRNVNEGFSGGEKKRNEI QFALLDSI GILDETDSGLDIDALK +SE IN LM N  KS+ILITHYKRLLEYIKP+YIHVMQ+G+I+KTG ++LA  LEEKGY+WL
Sbjct:  116 DPIEFSQILKNKMDLVKMDETLISRNVNEGFSGGEKKRNEIFQFALLDSIFGILDETDSGLDIDALKLVSEAINNLM-NATKSIILITHYKRLLEYIKPNYIHVMQNGKIIKTGDSNLAQQLEEKGYEWL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig82361.16256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7A2_ECTSI3.100e-8493.38ABC transporter domain-containing protein n=9 Tax=... [more]
A0A8F0JYB8_MACPY1.420e-8091.11ABC transporter domain-containing protein n=30 Tax... [more]
A0A8F0JZQ3_9PHAE6.690e-7989.63ABC transporter domain-containing protein n=2 Tax=... [more]
A0A2R4QQ20_9PHAE1.560e-7785.19Iron-sulfur cluster formation ABC transporter ATP-... [more]
A0A120HYF8_9PHAE2.070e-7282.58SufC n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A120... [more]
A0A8E6D6C7_9PHAE1.230e-6979.70Iron-sulfur cluster formation ABC transporter n=1 ... [more]
A0A8F0F7B5_9PHAE1.030e-6676.69ABC transporter domain-containing protein n=1 Tax=... [more]
A0A2I4Q2M5_9PHAE5.440e-6377.10ABC transporter domain-containing protein n=1 Tax=... [more]
B7T1Z2_VAULI1.710e-6075.97ABC ATPase n=1 Tax=Vaucheria litorea TaxID=109269 ... [more]
A0A7S6UA23_9STRA3.140e-6073.08Ycf16 n=1 Tax=Schizocladia ischiensis TaxID=196139... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig82361contigH-paniculata_contig82361:98..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score253.1
Seed ortholog evalue7.6e-65
Seed eggNOG ortholog2880.D1J705
Preferred nameycf16
KEGG koko:K09013
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ATPase activity
EggNOG OGs2QS88@2759,COG0396@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size411
Cds size411
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931033.5202904-CDS-H-paniculata_contig82361:97..5081622931033.5202904-CDS-H-paniculata_contig82361:97..508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82361 98..508 -
1691481559.4255898-CDS-H-paniculata_contig82361:97..5081691481559.4255898-CDS-H-paniculata_contig82361:97..508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig82361 98..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig82361.16256.1prot_H-paniculata_contig82361.16256.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig82361 98..508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig82361.16256.1

>prot_H-paniculata_contig82361.16256.1 ID=prot_H-paniculata_contig82361.16256.1|Name=mRNA_H-paniculata_contig82361.16256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
ANPLFFYELLREKLKMVNLDESFISRNVNEGFSGGEKKRNEILQFALLDS
ILGILDETDSGLDIDALKSISETINTLMQNKNKSVILITHYKRLLEYIKP
DYIHVMQDGQIVKTGGADLANLLEEKGYDWLKTVTN*
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mRNA from alignment at H-paniculata_contig82361:98..508-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig82361.16256.1 ID=mRNA_H-paniculata_contig82361.16256.1|Name=mRNA_H-paniculata_contig82361.16256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at H-paniculata_contig82361:98..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAATCCTTTGTTTTTTTATGAATTGTTAAGAGAAAAATTAAAAATGGT TAACCTTGATGAGAGCTTTATTTCTCGAAACGTTAATGAAGGATTTTCAG GAGGGGAAAAAAAACGAAATGAAATTCTACAATTTGCTTTATTAGATTCA ATATTAGGTATTCTTGATGAGACAGATTCGGGTCTTGATATTGATGCTTT AAAATCAATTTCTGAAACAATTAATACATTAATGCAAAATAAAAATAAAA GTGTTATTCTTATTACGCATTATAAAAGATTACTTGAATATATAAAACCC GACTATATTCATGTAATGCAAGATGGACAAATTGTTAAAACTGGTGGTGC TGACTTAGCAAATTTATTAGAAGAAAAAGGCTATGATTGGTTAAAAACTG TAACTAATTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig82361:98..508-

>mRNA_H-paniculata_contig82361.16256.1 ID=mRNA_H-paniculata_contig82361.16256.1|Name=mRNA_H-paniculata_contig82361.16256.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig82361:98..508- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAATCCTTTGTTTTTTTATGAATTGTTAAGAGAAAAATTAAAAATGGT
TAACCTTGATGAGAGCTTTATTTCTCGAAACGTTAATGAAGGATTTTCAG
GAGGGGAAAAAAAACGAAATGAAATTCTACAATTTGCTTTATTAGATTCA
ATATTAGGTATTCTTGATGAGACAGATTCGGGTCTTGATATTGATGCTTT
AAAATCAATTTCTGAAACAATTAATACATTAATGCAAAATAAAAATAAAA
GTGTTATTCTTATTACGCATTATAAAAGATTACTTGAATATATAAAACCC
GACTATATTCATGTAATGCAAGATGGACAAATTGTTAAAACTGGTGGTGC
TGACTTAGCAAATTTATTAGAAGAAAAAGGCTATGATTGGTTAAAAACTG
TAACTAATTAAGCAAATCCTTTGTTTTTTTATGAATTGTTAAGAGAAAAA
TTAAAAATGGTTAACCTTGATGAGAGCTTTATTTCTCGAAACGTTAATGA
AGGATTTTCAGGAGGGGAAAAAAAACGAAATGAAATTCTACAATTTGCTT
TATTAGATTCAATATTAGGTATTCTTGATGAGACAGATTCGGGTCTTGAT
ATTGATGCTTTAAAATCAATTTCTGAAACAATTAATACATTAATGCAAAA
TAAAAATAAAAGTGTTATTCTTATTACGCATTATAAAAGATTACTTGAAT
ATATAAAACCCGACTATATTCATGTAATGCAAGATGGACAAATTGTTAAA
ACTGGTGGTGCTGACTTAGCAAATTTATTAGAAGAAAAAGGCTATGATTG
GTTAAAAACTGTAACTAATTAA
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