mRNA_H-paniculata_contig8080.16090.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8080.16090.1
Unique NamemRNA_H-paniculata_contig8080.16090.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8080.16090.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 9.690e-18
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 IGAFFRVGFWGALPAELKGLEFVYRVPLMTHVSDFQNRV 117
            IGAFFRVGFWGALPAELKGLEFVYRVPLMTHVSDFQNRV
Sbjct: 1771 IGAFFRVGFWGALPAELKGLEFVYRVPLMTHVSDFQNRV 1809
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BLAST of mRNA_H-paniculata_contig8080.16090.1 vs. uniprot
Match: A0A6H5K0M0_9PHAE (DOCKER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M0_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.640e-16
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 IGAFFRVGFWGALPAELKGLEFVYRVPLMTHVSDFQNRV 117
            IGAFFRVGFWGALPAELKGLEFVYRVPLMT  SDFQNRV
Sbjct:  546 IGAFFRVGFWGALPAELKGLEFVYRVPLMTQFSDFQNRV 584
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8080.16090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBX9_ECTSI9.690e-18100.00Similar to dedicator of cytokinesis n=1 Tax=Ectoca... [more]
A0A6H5K0M0_9PHAE5.640e-1694.87DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8080contigH-paniculata_contig8080:9918..10034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue4.6e-15
Seed eggNOG ortholog2880.D8LBX9
KEGG koko:K21853
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.memory T cell proliferation
EggNOG OGsKOG1997@1,KOG1997@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931009.7495747-CDS-H-paniculata_contig8080:9917..100341622931009.7495747-CDS-H-paniculata_contig8080:9917..10034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8080 9918..10034 -
1691481549.1974547-CDS-H-paniculata_contig8080:9917..100341691481549.1974547-CDS-H-paniculata_contig8080:9917..10034Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8080 9918..10034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8080.16090.1prot_H-paniculata_contig8080.16090.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8080 9918..10034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8080.16090.1

>prot_H-paniculata_contig8080.16090.1 ID=prot_H-paniculata_contig8080.16090.1|Name=mRNA_H-paniculata_contig8080.16090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
IGAFFRVGFWGALPAELKGLEFVYRVPLMTHVSDFQNRV
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mRNA from alignment at H-paniculata_contig8080:9918..10034-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8080.16090.1 ID=mRNA_H-paniculata_contig8080.16090.1|Name=mRNA_H-paniculata_contig8080.16090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig8080:9918..10034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGAGCGTTTTTCCGAGTGGGCTTTTGGGGTGCGCTGCCGGCGGAGCT
GAAGGGGCTTGAGTTTGTGTATCGTGTCCCGTTGATGACTCACGTGTCTG
ACTTTCAAAATCGCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8080:9918..10034-

>mRNA_H-paniculata_contig8080.16090.1 ID=mRNA_H-paniculata_contig8080.16090.1|Name=mRNA_H-paniculata_contig8080.16090.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig8080:9918..10034- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGGAGCGTTTTTCCGAGTGGGCTTTTGGGGTGCGCTGCCGGCGGAGCT
GAAGGGGCTTGAGTTTGTGTATCGTGTCCCGTTGATGACTCACGTGTCTG
ACTTTCAAAATCGCGTGATCGGAGCGTTTTTCCGAGTGGGCTTTTGGGGT
GCGCTGCCGGCGGAGCTGAAGGGGCTTGAGTTTGTGTATCGTGTCCCGTT
GATGACTCACGTGTCTGACTTTCAAAATCGCGTG
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