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Homology
BLAST of mRNA_H-paniculata_contig8040.16057.1 vs. uniprot
Match: D8LIY6_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY6_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 5.890e-18 Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 3
Query: 813 PRPWVNSFVATGGGSAEHVPVFGFYHNMTTQQWWFHVVCETYLTTILDFDLDQSLVFDKIDEIFDELFFEIMVGPEAYELMPDVGVVLNRLA 1088
P + F + +A H+P +G + NM++ WWFHV + YL TI +F +D+ +V DKIDE+ DEL++EI VGPEA+E+MP V VVL+RLA
Sbjct: 144 PGAFQKHFKESHEDAAYHIPCYGAHENMSSWDWWFHVFTDAYLKTINEFYMDEDIVLDKIDELVDELYYEITVGPEAFEVMPLVKVVLDRLA 235
BLAST of mRNA_H-paniculata_contig8040.16057.1 vs. uniprot
Match: A0A6H5JZ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ79_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 4.400e-17 Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 3
Query: 813 PRPWVNSFVATGGGSAEHVPVFGFYHNMTTQQWWFHVVCETYLTTILDFDLDQSLVFDKIDEIFDELFFEIMVGPEAYELMPDVGVVLNRLA 1088
P + F + +A H+P +G + NM++ WWFHV + YL TI +F +D+ +V DKID++ DEL++EI VGPEA+E+MP V VVL+RLA
Sbjct: 278 PGAFQKHFKESHEDAAYHIPCYGAHENMSSWDWWFHVFTDAYLKTINEFYMDEDIVLDKIDDLVDELYYEITVGPEAFEVMPLVKVVLDRLA 369
BLAST of mRNA_H-paniculata_contig8040.16057.1 vs. uniprot
Match: A0A7S2RCE0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RCE0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.910e-5 Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query: 1644 ISVLRQTWRDENNGPK-LAVITNEDERVHVILENLGILPYFDFVLTSREV 1790
+S +++ WR+E GP LA+++N DER+H ILE L ++ FDFVLTSRE+
Sbjct: 192 LSYMKK-WREEEQGPMALAILSNYDERLHAILEQLDLIDAFDFVLTSREI 240
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 3959 |
| Cds size | 357 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8040.16057.1 >prot_H-paniculata_contig8040.16057.1 ID=prot_H-paniculata_contig8040.16057.1|Name=mRNA_H-paniculata_contig8040.16057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MGMEKPFNGMFDKAREIAGVDDAGKAMHVGISYEEDIAGACEQGWEAACI KPKQSDWESKDEMYEYHRLMQFEDLLNGFGLPKLQKTTMRRRRGQWWGDP EEDAMGWCGEETLGCNQL* back to topmRNA from alignment at H-paniculata_contig8040:3311..10284- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8040.16057.1 ID=mRNA_H-paniculata_contig8040.16057.1|Name=mRNA_H-paniculata_contig8040.16057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6974bp|location=Sequence derived from alignment at H-paniculata_contig8040:3311..10284- (Halopteris paniculata Hal_grac_a_UBK monoicous) TAAAGAGATGGTGTGAAATAGTTCGGTTACTGTGAGATGATACTAAAATA
AGATATATGTAAAACAACTAGAGAAAAAGAAAAATTTCATAAGTGAAATA
AAAATTGAAAGAACAGTGTAGTAGTAATAAACAATATATATATATATATA
TTATGTATATGTATGAAAGTGATGAGCAAATGGAAATGAGTTAATCTATG
GCTGCCGGTTTGTATATTTTTATTGGATGAATGTATAAGAACAGCTGTGA
GAACTTGCAAAATTATACCAACCCATAAGGGCCGAAACAGTTACTTTGCT
TGTTTCTCTACCAAGGAGGGGCAACATTCGGTACAGTTTCGAGCAGGCCT
TGAAACAAAATCAAGGACAAGAAAAGCCATTGTGCCGGGCATGGGCAACA
GTTGGACGTCGGATAGATACACCACGTCGTTACCACGATGAATAAAGCAC
GTAAATATACCGAAAACAGTTGAGTAAATTATGCATAAATTGCTCCGAAA
TGGTCGCCACTTTTTTTTTTTCCCCTTTTCTGTATCTTTCGTTGCAAATA
GGACCATATCCTTGTTATCAATTTTCCCTTCGTTTCGGAACAGATTTTCA
AGTCTGTATTGGAGTAACTTTTGAAATAGGAAGCTTGTTGGACGTCGTCC
CTATATACATCGCAATCTTTATCCAATCTCTCTTTTCCCCGCCTTCCTGC
CTTTTGGCTCACGTAATTTTGCTCGTGAGTGTGTTAAGATGAGCTGCATG
AACTCAGCATGGGTAGATTCAATTTGTGGCAAGTGACGTTAACTTTGTGA
ATGATCTCCTTCCCCCGGCCTTGGGTTAATTCTTTTGTGGCGACTGGCGG
AGGCAGCGCGGAGCACGTACCTGTGTTCGGATTCTACCACAACATGACTA
CCCAACAATGGTGGTTCCATGTGGTGTGTGAAACCTATCTCACGACGATT
CTCGACTTCGACCTCGATCAAAGCGTGAGTTCGTGCATCGTACTTTTTTC
TTTTTTTTTCGTAGGCGCGAAGTTATGGGTCATGTCTCCGTTCGGTAGGT
GTTTTTTTTTCATTTGAATTTATGTGTGTAGATAGCTGTTAACCATTGTA
GTGATTTCTCTCTTGGGACTATAAGGGTTTTGCCGTGCGGTCGAGGTCCT
ACTGTGTGCATGCGCTTAAAGGGTAAAAAAAAAATTACCGGGGGTGAATC
AAGCCCTGCTGTATCATTAGTGCTGTGTGCGGGATGAAGTGCGGCCATGA
AACATTTTTAATGTGCCGGTAACGTACCTCACGATACTTTCGTGACTGTA
CAGTAGCTCCACTTACACACATTGTACTAACAACGATATCCTAAACCTGT
ATCCCATTACACCGCTCGTCATAGTGTACCCAAATTTATAATTTATGATT
TATCGCAACCTTGATACTAGAGTACATGACTAGAGCGCGTCCTTCACAGA
AAATCAAACTACCCATCCAGGATTTTGTTGTTTGTCTCGTGTGCATGTGC
GTTTGTCACATCCATAACTACAAGTAGGTGACTCGACGAGCTCAAACCGT
GGCGGTGTATTTGTTGCTTTTCGTACTGATTTCATGGTCGTGCTAGGAGC
GTTCTCTGCTCCCTACTGCCCCCCGCGTCTCTTTGATGTTGACCTGCAAG
ACGTCACGGACTGCCGTTGTATTGTCGAAATATATGGGAATACAACGGGA
TAAGGTCAGTCGCCCCTTCGTCCTTTACCTGATGTAACTTTGCGCAGCAG
TGTGCACAACAGGGATTTGACTTGAATTGCATAGCTTCAAGATCGGTACG
ATGGAGCTATCATATGAGCGCTATAGATCTACTAACTCGGGCGAGGGGAT
TGACTCGTGAATTTCCTCTCCCCCTATTTGATCCAACGTACCCCGTGTTT
GCTGCAATCCAGCTTGTCTTCGATAAGATTGACGAGATTTTCGACGAGCT
GTTCTTCGAGATCATGGTGGGGCCGGAGGCATACGAGCTTATGCCTGACG
TCGGGGTCGTCCTGAACAGACTCGCGGTCAGTTGTGGGTGTCTTTTGAGC
AGGAGTATTTAGTGTTCGCGGTGGTTTAGAGGGTATGGCACCTTGGGTGA
CAGCTTGTCCAAGGCTTCACATCCTGGGAGACAGCGATGAAACCGCGATG
CTAGTGACATGAACGAATTGCACCGTCGGACACACGTCGAGGTCTATCGT
TAGGTGACGGGGTTGTTTCAGCAGTGCAAGCTGGGCATTATGCGGGGGTT
CCATTGAGACCAGCTCTCGGCGGTATCAATAGTGCGTTGCACCACGGACC
TACGCCCGAACGGGTAGGGTAGCTCGTGAACTGAGCATGACTGGAAGTCT
AGTCAGAGGTCTTCTAGTGGGTGCAACCCCCACACTGCTTACCTGGTTTA
GCCGAACCATGGTGGTGCCTACCCCGCAGAGGAATAAATAACTCTGTTCT
GTTAAAGGAAATGTAGAAGTACTTGAGTAAAATACTTAAATATGGAAGCA
TCGGTAAAGTTTTTTGTCTTAGCCTTCCGGGGGTTAAATTAAAAAAATAA
AAATAACGCGTTGCACGGCGATTGTTTTTTAATTTCTGTATTACGTCAGA
CATGGAGGGATGAGAACAACGGGCCTAAACTTGCTGTGATTACAAATGAA
GATGAACGTGTCCACGTCATCCTGGAAAATCTCGGGATTCTCCCGTACTT
CGATTTCGTGCTCACCAGTCGGGAGGTATGGTATCGATGCGGCGTTTACA
GTAGTTGCGATCTAATTTAAATGTATAGGCACAGGAAGCCGGAGGCAATG
GTTTGTTTGTTGAACAAAGTTTGTTAAAACTTGGACTGTCATGTTTGGGC
GAAGGCCTGGATGTGGAAGCAGCGGAAAAGGTTTTTACCTCAGCCTTCCG
GGGGTTAAAAAAAACAAACAAACTTGGACTGTTTTCGTTTTTTCCCCCAA
ACTCTTTGTATAGCTAGCTGCCTGCGCAAGGTTTTTTTTTTGTATTATTA
GTTCGAAAAGAAATGAAATCGTTGGTTGCCGTTTCTTCGGTTTATACTGA
ATCCAGGATAATCGGACCCCGATGGGCAAAGGAATGACCGCGTTTGGGTG
CGGGTTACGCTGAGTAACTAGCTGTCTGGAGCTGGTGACGCATTCAGTAG
ACACATCCATCGCTATTTTACGACCGCTATTAAACGATCTGTCTTATGAT
CGTTACAAGGTTCAGTTCCTCAAGAGCTCCAATTGCTTTTAGGTAGTGTG
GTCAACCCCGCGATAAAATTGCTTGTATCAAAGTACGTACATGTATATCC
GATAAATGACCAATCGTGGTGTAACTCTCGGTTAACGCCGTGAACAACGT
GTGTCTGTGGATTGATTAGATGGGCATGGAGAAACCGTTCAATGGGATGT
TCGATAAAGCGAGGGAGATAGCAGGCGTGGACGACGCGGGCAAGGTGAGT
ACAATTGCGGATTGGAGTGTGGGGTGGGCTTTTAGAAGAGATAGAAATGA
CGGGTTGAAGCTTTGTACAGAGATACTTATAGCTAATCATGTAATGTGAG
TACCTTTTCAGTCGGAAATTGCCCCGTACAGCCTGTGTGTGTGTATGCGT
GCGCGCGCGCGCGCGCGCGCGCGCGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTATATATATATAAGTGTGTATAAGTGTGTTTCAGGACAGTCCCAAGA
TCTTCAACCATAGATGTGATGGATGTACCAGTGATTATTTTACTAGATAG
ATTGTGCAACACCTGCTCTTCACGTTGAACGTCGTGGTTTCTGAAGGCCA
GGTAATTCCCTCTGGCGTTTTTTTTTCTTTTTTTTTTCGGCCAAGTAGGT
TGTACCTGAACTTGAATACAACGTGAGTGTGCGAGTGAAGTGAGAAATAT
TCGAGAACGCCTGGAGAAGAATCCGAGACACGTCCAATAGGCGCAGGTAG
CATGGACGAAACGCGGGTGTCAATGCGAGGGGGGTTTAATTATTATCGGG
TCGTTCTCTCACTGCTCGTCTCACTCATTTGTTTGTTTGAAGTGGAGACA
TTGCCTTCCCGTCCTTGACCTATATGTGTTGGACTGCGCTAAGCCTAATG
TCCCAGAAACTATCCTTCGCCCAACTCATCGGTCGGTGTTGCAGCGCCTC
CTCCCCTCCTCCTGGCCGACTGATTAATCAGGAGTAGCTTTGCGCTGCCG
CTTCGCGTTGTGTTCACGTTGCAATTCACTGGCCTCCCCTTTGTTTGGAC
AATAGGCCATGCACGTGGGTATAAGCTACGAGGAGGATATCGCGGGGGCT
TGCGAGCAGGGATGGGAAGCGGCCTGCATCAAGCCGAAGCAGAGCGATTG
GGAGTCAAAAGATGTGCGTTTTTTGTTCGTTTTCCCTCCTGTTGCCGATA
AACAAACATTTCATATTGTAGACCGCGGGCGAGTGCGTCTGATGGTTAGC
CGTAACCGAGTGGACAGGCACACCTCAAGCTCAAACCGCTATGGCATGTG
GATGTAGCGCTTTACCAGTGTATTGTAACCCGTCCGTGACAGCTCTACCA
GGGCGCGTGGGTCAATCGTAAATGGTCCAACACCGAAAGGCATTCCAACC
CTGAGTTCCCCTGTGATGTTTTCTCGTGGAGGGATATTCTGGCTAGCGTT
ATCAGCACGTTGTTTTACGATATTCAAGGTATGGTAGATTGAGCTTGCCT
ATTCCACCTATTCAGTCAGTTCCAAGGGTTGAGTATATTGACCGTCGTCG
AAAGAGGTATGTTTGGCCGATGATGTTTCCGTGTAAGTAGTCCCAAATGG
TGCCAACAGTCCCAATACTTGGTGTTCGTCAACGGGGTGAGTCATACTCC
AGACTATTAAAGGGGTGTCGATGTAATTTATTTCAGTAACACGCTTGAAT
CACTCCCTTCCTATTTTTGATACAATGTTGATAAGTGTACACAGCTGAGA
TTGAGGTTAACGGCATCCCCCCCCTGCCCCTACAGGAGATGTATGAATAC
CATCGCCTGATGCAATTCGAAGATCTTCTTAATGGCTTCGGCTTGCCCAA
GCTGCAAAAGACCACCATGCGGAGGCGAAGAGGGCAGTGGTGGGGTGACC
CTGAGGAGGACGCGATGGGGTGGTGTGGTGAAGAGACGTTGGGGTGCAAC
CAGTTGTAGCTAGACTCCATCTAGCCCTTTACGTCCATCTATTTCGTAGC
TCGGCAGTAGGTCCAGGGATAGCTGCATCATCGCTTTCTTTTCTTCGGCA
GTAGGACCAGGGATAGCTGCATCGGCGCTTGCTTGCACTTTTTTTGTCTT
GTAGTTTTTTCACCTTGTTGTGAAACCATGCATATCTCGTGTTTTTTTGT
TGTTGTTCGTTTGTTTGTCACACGGCGAGGAGGTATTTTGCGGTCTCCTG
AACAACTCGCTTATCTCTTGTTTAGAATTCCCGTGCCATTTGCCAACATG
GCCAGGCTTTGGCGCTGTTTTCTTGACTTGCTTTCTTTTGCTCCGTTTAT
GGGAGTAGCTTGATGCTGTTTTTCGCATAGGGGTGGCGTTAGCTTTTGTG
CAGCTTTGCCAGTGTTGGCTGTGGTCGAGAGTGTTGAGCCATTCTACAAC
CCCCCCCTCCCTTATGTATCACTCTACCTGAAATAAGAACAGGTAGGGTG
CATTGTTTTTCGGGGGCTGAGGTGTTGCACATTGTGCAGCTAGCTGTGCG
ATGAGATCATTTTTTTTAAGTGATGTCAGGGAAGTCACACTCCTTCTCTC
GGCTGAGCAGTGAAAGCTGCCGTACGTAAGAGTCTGCTTTCGTTTTATAA
GGGGCTGGATCGACATTGAGGCAGCATGTACTTGGTTTTTGGGGGGCGCG
GTGTGTGTAGGCTGCAGCGTTTTTTTTTCTTCTTCAGACGAGTACAGGGG
TATGGAATTCGGCTTTTCGGTTTGGGAGAAGAGTTGCACCTTGTCGGGGG
ACATTATGATGGGCTAAGGTTTGACCCTGACCTCATGCCAGACAGTCACT
TCGAGGGGTTGAGGATGCCAAAATGTCTAGTCGGAATCTGTAATTTTCTT
GTTGTAGCAGTGCGTGTGTTTGGCTACTGGAGTTGTTGGGGGGAGCACGT
GAAACGTCCACATGTGGAATTCGATTTTTAGTATTATTGTTTCCCCGCGG
CGTTGTTGAACCTTACTCTTGTCTCTGTTGTCAAGCATGCCCAAGACTCG
GTCAAAAGCTCTGGTATTATTGGCGCGTGAAATACGAGCTTGAGAGGGTA
TTTCTGTTGTGCATGTCGGGTAAAATGTGGTATTGGTGCTCTTGGTTAAA
ATTGGCATGTGATGGGTATATAAAAACAACTGTAGAAGGGTCAACGTTGG
CGTTTCGGTACGTGGTCCTCGTATGCTGCGCTGGTCTTCCTTTTAAGCGC
CTTGTCACCTGTGTCGCAAACACTCGCCGACCGTAATGATATATTGAAAC
CGAGGAAATGCACAACACGCGTGACAATGGAAATATTGGTAGCTAACGAT
TGGGGTCTTGGCAATATTTGACATGACTCTTGAGTACCAATCGGTACCCA
AGAGCTCCGACGGGTCCTAATAGGTCAATTCACGAAATCCTGTGGGAAAA
CCATGGGAATCCGTGGGCAACCACGAATACTCAAGGGTGACTGAGGTTGC
CCACGAGTGCCCGTGCGCGCCCATGAATGCTCACGACGAGCCGCCATGGA
TACCACGGTGGGTCGCTGTAGCAACCGATGGGAACCCCAAAATGTCGGTA
TTTCAAATATGTAAGGGGTAGTTTTTGACCCAAGGGTTTAGATCACGGCA
ACTCATGACGATCCACGTAAAATCGTGTACGCGTTTTTGTCCGATGAAAA
GCTATGGTCAGACATACTTATGTGATCGACGTCGCCGTGGTCGAGTCTCG
GTTGGGTATTCCAATTGATTAATCGAGTAGATGATACTGTTCCGAAGCTT
CATATGAGAATAATAACGCCTAGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig8040:3311..10284- >mRNA_H-paniculata_contig8040.16057.1 ID=mRNA_H-paniculata_contig8040.16057.1|Name=mRNA_H-paniculata_contig8040.16057.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig8040:3311..10284- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGGCATGGAGAAACCGTTCAATGGGATGTTCGATAAAGCGAGGGAGAT AGCAGGCGTGGACGACGCGGGCAAGATGGGCATGGAGAAACCGTTCAATG GGATGTTCGATAAAGCGAGGGAGATAGCAGGCGTGGACGACGCGGGCAAG GCCATGCACGTGGGTATAAGCTACGAGGAGGATATCGCGGGGGCTTGCGA GCAGGGATGGGAAGCGGCCTGCATCAAGCCGAAGCAGAGCGATTGGGAGT CAAAAGATGCCATGCACGTGGGTATAAGCTACGAGGAGGATATCGCGGGG GCTTGCGAGCAGGGATGGGAAGCGGCCTGCATCAAGCCGAAGCAGAGCGA TTGGGAGTCAAAAGATGAGATGTATGAATACCATCGCCTGATGCAATTCG AAGATCTTCTTAATGGCTTCGGCTTGCCCAAGCTGCAAAAGACCACCATG CGGAGGCGAAGAGGGCAGTGGTGGGGTGACCCTGAGGAGGACGCGATGGG GTGGTGTGGTGAAGAGACGTTGGGGTGCAACCAGTTGTAGGAGATGTATG AATACCATCGCCTGATGCAATTCGAAGATCTTCTTAATGGCTTCGGCTTG CCCAAGCTGCAAAAGACCACCATGCGGAGGCGAAGAGGGCAGTGGTGGGG TGACCCTGAGGAGGACGCGATGGGGTGGTGTGGTGAAGAGACGTTGGGGT GCAACCAGTTGTAG back to top
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