mRNA_H-paniculata_contig78976.15920.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig78976.15920.1
Unique NamemRNA_H-paniculata_contig78976.15920.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig78976.15920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig78976contigH-paniculata_contig78976:6..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930982.4707613-CDS-H-paniculata_contig78976:5..1891622930982.4707613-CDS-H-paniculata_contig78976:5..189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78976 6..189 +
1691481537.7580292-CDS-H-paniculata_contig78976:5..1891691481537.7580292-CDS-H-paniculata_contig78976:5..189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78976 6..189 +
1622930982.5020354-CDS-H-paniculata_contig78976:480..5511622930982.5020354-CDS-H-paniculata_contig78976:480..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78976 481..551 +
1691481537.767481-CDS-H-paniculata_contig78976:480..5511691481537.767481-CDS-H-paniculata_contig78976:480..551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig78976 481..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig78976.15920.1prot_H-paniculata_contig78976.15920.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig78976 6..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig78976.15920.1

>prot_H-paniculata_contig78976.15920.1 ID=prot_H-paniculata_contig78976.15920.1|Name=mRNA_H-paniculata_contig78976.15920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
SGSSSTPSVPSTAERPRAGVGADADSRRTAMDVGEELQSSSPVTTTPVAA
SGASMASPSPPEPFSEIPPRLRKYCVRHDTLPGWT
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mRNA from alignment at H-paniculata_contig78976:6..553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig78976.15920.1 ID=mRNA_H-paniculata_contig78976.15920.1|Name=mRNA_H-paniculata_contig78976.15920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at H-paniculata_contig78976:6..553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAGCTCGTCGACTCCGAGTGTCCCGTCGACGGCGGAGCGGCCCCG
AGCAGGTGTTGGTGCCGACGCCGACAGTCGCCGGACGGCGATGGATGTCG
GTGAGGAGCTTCAGTCCTCTTCGCCTGTTACGACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCTCTCCATCTCCGCCCGGTGCGTAGGAGAGCGC
CAGGGTTACTCGCGATCGAAGCGTCCACAACGTACAGCATATCCCATACA
GATATGTAATGGCAATGTCGGGCCATGTTCATGTAGCGGCTCGAGGCGTT
CGAGCTCCGACGTGCTTGCATGTATATGTATACGCAGAAACGTCGCCAGC
ACTCATGATATGCCTCAAGTCGTTATGATTAATAGTGCTACCCCCGCTCC
CGCCTCCCCCGCCTCGTCGCCCCGCCCCCTGCACCTCCCGTCTTCGACAA
CTGACACGCCGCCGCCTTTTCTCAGAGCCTTTTTCCGAAATCCCGCCGCG
CCTCCGCAAGTACTGCGTAAGGCATGACACCCTCCCGGGATGGACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig78976:6..553+

>mRNA_H-paniculata_contig78976.15920.1 ID=mRNA_H-paniculata_contig78976.15920.1|Name=mRNA_H-paniculata_contig78976.15920.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig78976:6..553+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAGCTCGTCGACTCCGAGTGTCCCGTCGACGGCGGAGCGGCCCCG
AGCAGGTGTTGGTGCCGACGCCGACAGTCGCCGGACGGCGATGGATGTCG
GTGAGGAGCTTCAGTCCTCTTCGCCTGTTACGACCACGCCGGTCGCCGCG
AGTGGCGCCTCCATGGCCTCTCCATCTCCGCCCGAGCGGGAGCTCGTCGA
CTCCGAGTGTCCCGTCGACGGCGGAGCGGCCCCGAGCAGGTGTTGGTGCC
GACGCCGACAGTCGCCGGACGGCGATGGATGTCGGTGAGGAGCTTCAGTC
CTCTTCGCCTGTTACGACCACGCCGGTCGCCGCGAGTGGCGCCTCCATGG
CCTCTCCATCTCCGCCCGAGCCTTTTTCCGAAATCCCGCCGCGCCTCCGC
AAGTACTGCGTAAGGCATGACACCCTCCCGGGATGGACGAGCCTTTTTCC
GAAATCCCGCCGCGCCTCCGCAAGTACTGCGTAAGGCATGACACCCTCCC
GGGATGGACG
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