mRNA_H-paniculata_contig7886.15908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7886.15908.1 vs. uniprot
Match: D7FJE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE3_ECTSI) HSP 1 Score: 162 bits (410), Expect = 7.720e-38 Identity = 121/293 (41.30%), Postives = 154/293 (52.56%), Query Frame = 1
Query: 1696 ANKMVEESRRRRVKAAVMRHWTPVEVAAWIERVLRKAEGRGNLPLLFSGGATGRIGMM-------------VDGHNSNDQHRKFLLGGEQILRGLPAVVSNRSSDISNELVGGKPKDLGRNTDAASVILEDV--VSGVGVHESEDRLSNVGNGRLFNRVGDQQQDDGWDGEMNNQNIRVDNADTADELRASAEEGSSSGDDDHDWASVEATERKGYSGVAVEPAAVAKGMDGFSLLEAMEGALKYTEDALTRFVKSSVRLPRLEEVESRRVELMVRELVTLRPYSNPSQIKMR 2529
AN+ E R RRV+AA M HWTPVEVA+WI +LRKAE G LPLLFSG A G M V D G V S+ ++ + E G D A + ++V SGV + ++ VG + + D+ DDG G++NN E S++G WA VEA ER GYSG AVEP AV +G++G ++EAME AL +TEDALTRF+KSS RL R EVE +RVELMVREL+T+RPYS SQ+K+R
Sbjct: 66 ANREAREWRGRRVRAAKMHHWTPVEVASWISHLLRKAETSGKLPLLFSGDAKGGTTSMGGDDTGPGAVENRVINPTEEDAQESGTAANPTPEEGGGVVDSSDTTPVKTE--GSSSPAAAPPCDPAPSLADEVKKCSGVLADAQDSSIAGVGQAQGDDNF-DKNTDDGGHGDVNNXXXXX-------XXXXXXXENSNNG-----WAEVEAGERTGYSGAAVEPFAVKEGINGCCIMEAMEDALGHTEDALTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLR 343
BLAST of mRNA_H-paniculata_contig7886.15908.1 vs. uniprot
Match: A0A6H5LN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN38_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.680e-22 Identity = 60/89 (67.42%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 2263 WASVEATERKGYSGVAVEPAAVAKGMDGFSLLEAMEGALKYTEDALTRFVKSSVRLPRLEEVESRRVELMVRELVTLRPYSNPSQIKMR 2529
WA VEA ER GYSG AVEP AV +G++G ++EAME AL +TEDALTRF+KSS RL R EVE +RVELMVREL+T+RPYS SQ+K+R
Sbjct: 266 WAEVEAGERTGYSGAAVEPFAVKEGINGCCIMEAMEDALGHTEDALTRFIKSSTRLARPAEVEQKRVELMVRELLTIRPYSTASQLKLR 354
BLAST of mRNA_H-paniculata_contig7886.15908.1 vs. uniprot
Match: A0A835YXH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH4_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.910e-9 Identity = 65/210 (30.95%), Postives = 88/210 (41.90%), Query Frame = 1
Query: 784 QEDLIRWTRQVAEGLVRVCGSDGIARVAGAGATWLLRVSTRNVYLFPRPKSEFSLGSAEFLDARVATFLGPSFENNPSPVQGENNAAYKDRFVRPLMPPEWVSARFDDNVLPIGCTPSSPAKTNAWQTRRKCVDVWGMGTLVFELATARIAGPMPLALRPLRDLLRDVPIGPRFLYGDLARGVMRLAFRTDPGERAGAPQIAAIVEEITA 1413
Q DL+RWTRQ G VR S + G LL + YL+PR + ++ A V S + G + AA PL P+ +A + P + N +WG+GTLV+ELAT GP P+ PL +LR VP+GP F YGD R V+ L DP + +A V E+ A
Sbjct: 13 QADLLRWTRQAIAG-VRQLQSRQLLSTEGPAQQPLL--CSHTAYLYPRALTATTVAGAAGXXXXVRASDAASLDLK----LGLHVAA------APL--PQEAAASY--GASPFAVQLQLQQQQNGGVDAGLARALWGLGTLVYELATGAPLGPTPIWTVPLSAVLRSVPVGPYFKYGDCVRRVLALTLVRDPRLQPTVAHLADAVAELAA 205 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7886.15908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7886.15908.1 >prot_H-paniculata_contig7886.15908.1 ID=prot_H-paniculata_contig7886.15908.1|Name=mRNA_H-paniculata_contig7886.15908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=844bp MTALETSPEWGVQLPHIRRSILAEKSLPAAMVRFVPRMTRSRPQVAYAVRback to top mRNA from alignment at H-paniculata_contig7886:4607..9604+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7886.15908.1 ID=mRNA_H-paniculata_contig7886.15908.1|Name=mRNA_H-paniculata_contig7886.15908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4998bp|location=Sequence derived from alignment at H-paniculata_contig7886:4607..9604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7886:4607..9604+ >mRNA_H-paniculata_contig7886.15908.1 ID=mRNA_H-paniculata_contig7886.15908.1|Name=mRNA_H-paniculata_contig7886.15908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5064bp|location=Sequence derived from alignment at H-paniculata_contig7886:4607..9604+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |