mRNA_H-paniculata_contig7885.15906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7885.15906.1
Unique NamemRNA_H-paniculata_contig7885.15906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.680e-16
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    4 VDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHEAMLMPHSKR 237
            VDH+GRA+A+T GF GA NDK+II YD  V ++  D     RT++L   D T+ E  G Y +VDNG HE   + H  R
Sbjct:   49 VDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNSLGHPNR 126
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BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.910e-15
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 MVDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNG 201
            +VDH+GR LAVTKGFPGA NDK+II YD AV M+  DP    +   LF+E+    E  G Y +VDNG
Sbjct:   43 IVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENGRPFERKGNYSIVDNG 109
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BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 8.060e-15
Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:    4 VDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHEAMLMPHSKR 237
            VDH+GRA+A+T GF GA NDK+II YD  V  +  D     RT++L   D T+ E  G Y +VDNG HE   + H  R
Sbjct:  358 VDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNR 435
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.360e-14
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    4 VDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHE-AMLMPHSK 234
            VDHSGR LAVT+GF GA NDK+II YD AV  +  DP    + ++L+ +D    E  G Y LVDNG H+   L+P SK
Sbjct:  191 VDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSK 268
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.590e-14
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    4 VDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHE-AMLMPHSK 234
            VDHSGR LAVT+GF GA NDK+II YD AV  +  DP    + ++L+ +D    E  G Y LVDNG H+   L+P SK
Sbjct:  282 VDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSK 359
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.130e-13
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:    1 MVDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHEAMLMP 225
            +VDH+GR LAVTKGF GA NDK+II YD AV  +  DP    + + L +++    E  G Y +VDNG ++A   P
Sbjct:   48 IVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNGQPFERKGNYSIVDNGYNKATPPP 122
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.850e-13
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    4 VDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHE-AMLMPHSK 234
            VDH+ R LAVT GF G+ NDKSII YD AV  + EDP    + F ++  D T  +  G Y LVDNG H+   L+P SK
Sbjct:   25 VDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSK 102
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5KQK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.840e-13
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 MVDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNG 201
            +VDH+G  LAVTKGF G  NDK+II YD AV  +  DP    + + LF+++    E  G Y +VDNG
Sbjct:   49 IVDHTGHVLAVTKGFAGVMNDKTIIRYDTAVAKIRRDPVYTKKVYTLFDKNGQPFERKGNYSIVDNG 115
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5JCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCA4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.510e-13
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:    4 VDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNH 207
            VDH+GRA+AVT+GF G+ NDK+I+ +D AV+ +  D     +TF ++NED T     G Y LV NG H
Sbjct:   69 VDHAGRAIAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVVNGYH 136
[Close]
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Match: A0A6H5KTA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA5_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.640e-13
Identity = 34/77 (44.16%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    7 DHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNEDSTWMEHNGVYPLVDNGNHEAMLMPHSKR 237
            +H+GRA+A+T GF G  N K+II YD  V  V  D     RT++L   D T+ E  G Y +VDNG HE   + H  R
Sbjct:   66 NHAGRAIAITSGFTGETNHKTIIRYDAGVHTVKTDAQYTKRTYKLRRADGTFRERKGCYLIVDNGYHEVNSLGHPNR 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7885.15906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG32_9PHAE2.680e-1647.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ66_9PHAE1.910e-1555.22DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JCU6_9PHAE8.060e-1547.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE1.360e-1451.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.590e-1451.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J792_9PHAE1.130e-1346.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.850e-1350.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KQK3_9PHAE3.840e-1347.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCA4_9PHAE4.510e-1348.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTA5_9PHAE4.640e-1344.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7885contigH-paniculata_contig7885:5931..6648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.0
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930980.775348-CDS-H-paniculata_contig7885:5930..60381622930980.775348-CDS-H-paniculata_contig7885:5930..6038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7885 5931..6038 -
1691481536.9091418-CDS-H-paniculata_contig7885:5930..60381691481536.9091418-CDS-H-paniculata_contig7885:5930..6038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7885 5931..6038 -
1622930980.7944562-CDS-H-paniculata_contig7885:6438..66481622930980.7944562-CDS-H-paniculata_contig7885:6438..6648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7885 6439..6648 -
1691481536.9233785-CDS-H-paniculata_contig7885:6438..66481691481536.9233785-CDS-H-paniculata_contig7885:6438..6648Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7885 6439..6648 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7885.15906.1prot_H-paniculata_contig7885.15906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7885 5931..6648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7885.15906.1

>prot_H-paniculata_contig7885.15906.1 ID=prot_H-paniculata_contig7885.15906.1|Name=mRNA_H-paniculata_contig7885.15906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MVDHSGRALAVTKGFPGANNDKSIIGYDVAVQMVSEDPTIRNRTFRLFNE
DSTWMEHNGVYPLVDNGNHEAMLMPHSKRSVTNEETRRARRGRAYGRMWN
VSSAS*
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mRNA from alignment at H-paniculata_contig7885:5931..6648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7885.15906.1 ID=mRNA_H-paniculata_contig7885.15906.1|Name=mRNA_H-paniculata_contig7885.15906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=718bp|location=Sequence derived from alignment at H-paniculata_contig7885:5931..6648- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGATCATAGTGGCCGTGCCCTTGCCGTCACAAAGGGCTTTCCTGG
CGCTAACAACGACAAATCAATCATCGGTTACGACGTGGCGGTGCAAATGG
TCAGCGAGGATCCCACGATCAGGAACCGGACGTTCAGGCTTTTCAACGAG
GACAGCACATGGATGGAGCACAATGGAGTCTACCCTCTGGTGGACAACGG
GAATCATGAGGTGAGAATGACAGGGGCATGGTTCTAATAGGCGAAGATTT
ACTACTACCGACGACTACAGGTTAGGTTCAATGTAGCCGAAACGTGCAGG
GTTAGGATTAGGGTAAGGCGTGTGTTGTATCATCGTCATATCTAAAATGC
GAGATGACAATGTTCAAAACGTTCGCAAGTAGCGGGACAATGGGCTTCGC
AATAAAACACACCTTTCAAAATTGAGGAATTCGATTATAATTGATATTTG
CATCAATTTTCATTTATTACACCGGCATTGCCGCCTGGTACGCTCGTTTC
AAATTGGTGATAATGGCCCAGTGTGCGAAACCAACACACAAACATCCCCG
CTCTGTGCAAACCCAACACCTTCTCGTCAACCCAATCGCATATTTACACA
CATGCAGTAGGCTATGCTCATGCCCCATTCAAAGCGCTCCGTGACCAATG
AGGAGACACGCAGAGCAAGACGTGGGAGAGCGTACGGAAGGATGTGGAAT
GTTTCTTCGGCCTCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig7885:5931..6648-

>mRNA_H-paniculata_contig7885.15906.1 ID=mRNA_H-paniculata_contig7885.15906.1|Name=mRNA_H-paniculata_contig7885.15906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig7885:5931..6648- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGATCATAGTGGCCGTGCCCTTGCCGTCACAAAGGGCTTTCCTGG
CGCTAACAACGACAAATCAATCATCGGTTACGACGTGGCGGTGCAAATGG
TCAGCGAGGATCCCACGATCAGGAACCGGACGTTCAGGCTTTTCAACGAG
GACAGCACATGGATGGAGCACAATGGAGTCTACCCTCTGGTGGACAACGG
GAATCATGAGATGGTCGATCATAGTGGCCGTGCCCTTGCCGTCACAAAGG
GCTTTCCTGGCGCTAACAACGACAAATCAATCATCGGTTACGACGTGGCG
GTGCAAATGGTCAGCGAGGATCCCACGATCAGGAACCGGACGTTCAGGCT
TTTCAACGAGGACAGCACATGGATGGAGCACAATGGAGTCTACCCTCTGG
TGGACAACGGGAATCATGAGGCTATGCTCATGCCCCATTCAAAGCGCTCC
GTGACCAATGAGGAGACACGCAGAGCAAGACGTGGGAGAGCGTACGGAAG
GATGTGGAATGTTTCTTCGGCCTCCTGAGCTATGCTCATGCCCCATTCAA
AGCGCTCCGTGACCAATGAGGAGACACGCAGAGCAAGACGTGGGAGAGCG
TACGGAAGGATGTGGAATGTTTCTTCGGCCTCCTGA
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