mRNA_H-paniculata_contig7817.15842.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7817.15842.1
Unique NamemRNA_H-paniculata_contig7817.15842.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: A0A401H3M5_9APHY (Transposon Ty5-1 protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H3M5_9APHY)

HSP 1 Score: 172 bits (437), Expect = 5.750e-48
Identity = 104/315 (33.02%), Postives = 162/315 (51.43%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPPVFSPFSRDIPFVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRREGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCG------RGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            MDV   YL+A +EE++F+K PP  +   R+  +V   R +++GLK S R W   +   L  + L RS  D C+ +  +      ++ A++VDD  IAG    V  FK  I + F M + G +  +LG EV RDR   T+S+ QR Y    + R N ++ + + TP++    +    C           +  YR  +G LMYA  G +P IA  V   ++ M++P R  +   KR+ RY+    +  +T+     G   EGF DADW     + S +G V  ++ GA+ W ++KQ ++  SSTEAEY+A+  A  E
Sbjct:    1 MDVKGAYLNAELEEDIFMKQPPGQAERGRE-HWVCHLRHAIYGLKQSGRQWFKKISAALDEMGLSRSLVDHCVFYLDEDNDSITLIIALSVDDTTIAGTNSAVLWFKTEISKHFEMTDLGEMHWILGIEVCRDRAARTLSLSQRAYIDGIVARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKGTRERWLTYGRTRDGV--EGFSDADWGSSEHRHSISGYVFLIDGGAVSWSAKKQPVIALSSTEAEYIALTHAAKE 312          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: A0A401GQU1_9APHY (Uncharacterized protein n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GQU1_9APHY)

HSP 1 Score: 176 bits (446), Expect = 8.380e-46
Identity = 107/315 (33.97%), Postives = 164/315 (52.06%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPPVFSPFSRDIPFVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRREGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCG------RGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            MDV   YL+A +EEE+F+K PP  +   ++  +V   R +++GLK S R W   +   L  + L RS  D C+ +  +      ++ A++VDD  IAG    V  FK  I +RF M + G +  +LG EVRRDR   T+S+ QR Y    + R N ++ + + TP++    +    C           +  YR  +G LMYA  G +P IA  V   ++ M++P R  +   KR+ RY+    +  +T+    +G   EGF DADW     + S  G V  ++ GA+ W ++KQ +V  SSTEAEY+A+  A  E
Sbjct: 1070 MDVKGAYLNADLEEEIFMKQPPGQAKRGKE-HWVCLLRHAIYGLKQSGRQWFKKMCAALDEMGLSRSLVDHCVFYLDEDDDSVTLIIALSVDDTTIAGTNNAVLWFKTEISKRFEMTDLGEMHWILGIEVRRDRAARTLSLSQRAYIDGLMARFNLEDAKPLSTPLEPGAILSIRQCPSTPREFEDMRNVPYREAIGSLMYAALGTRPDIAFAVTALSQFMQNPGRAHWEAAKRVLRYLKSTREKWLTYGLTRNGV--EGFSDADWGSSEHRHSICGYVFLIDGGAVSWSAKKQPVVALSSTEAEYIALTHAAKE 1381          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: W8ANX7_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8ANX7_CERCA)

HSP 1 Score: 173 bits (439), Expect = 6.850e-45
Identity = 110/314 (35.03%), Postives = 168/314 (53.50%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPPVFSPFSRDIPF-VRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRR-EGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKIL--EPDCGRGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWA-EGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            MDV   YL++ + + +++K P  F    +  P  V + +K+L+GLK S R WNS L+ +L+ +  +   ++PC+    +KGK    + AV VDDLIIA    + + + K  I   F + + GSL   LG E+ R+   G+++I Q  Y    L +   + C+ V TP++   +    + DC R  N TQY+ ++G LMY     +P I  +V + A+R  DPH E     KRI RY+    D  + +  + +G   +G+VDADW  +  D+KS TG           W S+KQ LV+ SSTEAEYVA+  A  E
Sbjct:  883 MDVSTAYLNSDLHDIVYMKQPEHF--IDKQFPKRVLQLKKALYGLKQSGREWNSKLESVLIKMNFKSCPSEPCVYTRNEKGKYN--IIAVYVDDLIIASSNMKDLSDIKAKIADAFDVVDGGSLKYFLGMEIEREGDVGSINICQSQYILNMLSQYGMENCKSVATPLEAGFQTYCDKEDCERV-NVTQYQSLIGALMYLAISTRPDILHSVSKLAQRNSDPHVEHKIGAKRIMRYLKGTVDYKLHY--QKTGKPIQGYVDADWGGDTNDRKSYTGCAFVAAGSVFSWESKKQNLVSLSSTEAEYVALSTAAKE 1189          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: A0A1J3DEI6_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3DEI6_NOCCA)

HSP 1 Score: 165 bits (418), Expect = 1.750e-43
Identity = 106/318 (33.33%), Postives = 168/318 (52.83%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPP-VFSPFSRDIPFVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRR-EGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRGGNSTQ------YRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGD-QKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            MDV   +L   +EEE++++ P  +  P    +  V R RKSL+GLK + R W    D  ++ I  QR   D C+ + + +     I+  + VDD++IAG   + + E K  +GR F M++ G+   +LG E+RR+R +  + + Q+ Y ++ L+R +    + V TP+     +      + G   +      Y   VG LMYA+   +P +A  V Q ++ M  P RE ++  K + RY+    + G+ F  +  G    GFVD+D+A   D ++STTG V  L  GAI W S  Q +V  S+TEAEY+A+GEA  E
Sbjct:  114 MDVKTAFLHGDLEEEIYMEQPEGLVKPGEEKL--VCRLRKSLYGLKQAPRQWYKRFDSYMLKIGYQRCEYDCCV-YVQCRDGHPPIILLLYVDDMLIAGSNMDDIVELKRLLGREFEMKDLGAAKKILGMEIRRERSSKRLWLSQKAYIQKVLERFDMSGAKPVSTPLANHFNLETAQSPKTGEEIKDMEQVPYASAVGCLMYAMVCTRPDLAQAVSQVSKYMSKPGREHWNAVKWVLRYLKGTAEDGLMFGGQECGS-VVGFVDSDYAGDLDNRRSTTGFVFTLAGGAICWRSVLQTIVAMSTTEAEYMAMGEAAKE 427          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: UPI001C79D330 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001C79D330)

HSP 1 Score: 169 bits (427), Expect = 3.110e-43
Identity = 103/317 (32.49%), Postives = 167/317 (52.68%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPPVFSPFSRDIPFVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRR-EGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRGGNSTQ------YRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGD-QKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            +DV   +L   +EE++++  P  FS   ++   V + +KSL+GLK + R W    D+ +      R   D C C+ ++      I+  + VDD+++AG   E ++E K  + +RF M++ G+   +LG  + RDR N T+ + Q  Y ++ LKR N D+ + V TP+    ++ +    +     +      Y   +G LMYA+   +P IA  V   +R M +P ++ +   K I RY+    D  + F    +G   +G+VDAD A   D +KSTTG V  L   A+ W S+ Q++V  S+TEAEYVA+ EAG E
Sbjct: 1021 LDVKTAFLHGDLEEDIYMHQPQGFSVKGKE-NLVCKLKKSLYGLKQAPRQWYRKFDNFMCSNGFTRLQADHC-CYMKNFDNSY-IILLLYVDDMLVAGSSIEEINELKKQLSKRFEMKDLGAAKQILGMRIIRDRSNDTLKLSQEEYVKKVLKRFNMDKAKPVSTPLASHFRLTKDQSPKTEEEQECMDRIPYASAIGSLMYAMVCTRPDIAQAVGAVSRYMSNPGKQHWEAVKWILRYLQGSSDTSLCF--TKAGLKLQGYVDADLAGDVDSRKSTTGFVYTLGGTAVSWASKLQKIVALSTTEAEYVAITEAGKE 1332          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: H3H9X3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9X3_PHYRM)

HSP 1 Score: 159 bits (403), Expect = 8.810e-43
Identity = 101/273 (37.00%), Postives = 147/273 (53.85%), Query Frame = 1
Query:  115 KSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRR-EGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWA-EGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            K+++GLK + R WN T D+ +  I  Q S  DPCL      G+   +L  V VDD++I G   E +   K  +  RF M + G  + VLG E+  D P+G++++ QR Y  + LKR   DEC+ V +PV    +++  D     N+  +R  VG LM+ +T  +P IA  V   +R ME+P  E +   KRIFRY+      GI F       D  G+ DADWA +  D+KST+G    L    + W S+KQ  V+ S++EAEY+A+  A  E
Sbjct:   26 KAIYGLKQASRVWNETFDEFMCSIGFQVSAFDPCLYIKMVDGQC--VLVLVYVDDVLITGSSLELISRTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAP-FREAVGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYLQGTKAHGICFK-PGDKIDFRGYSDADWAGDLADRKSTSGYAFMLMSAPVSWGSKKQSSVSLSTSEAEYIALSLAIQE 293          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: A0A4Q2D651_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D651_9AGAR)

HSP 1 Score: 166 bits (419), Expect = 3.320e-42
Identity = 106/326 (32.52%), Postives = 164/326 (50.31%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPPVFSPFSRDIP--FVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGR-REGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRG---------GNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDRE--GFVDADWAEGGDQ-KSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGMETA 933
            MDV   YL+  ++E++++       P   DIP     + ++SL+GLK S R WN TLD  L+ + L R   + CL   ++ G+   ++  V VDDL++A   R  +++ K  +  RF M++ G    +LG  + RDR NG + + QR Y    L+R     C   PTP+    K  E D             G    Y+ +VG LMYA+   +P +A  V    R   +P +  +S  KR  RY+    ++ + ++    G      GFVDA W++  D  +ST G V   N GA+ W S++Q +V+ SSTEAEY+++  AG   A
Sbjct: 1106 MDVTTAYLNGVLDEDIYLS-----PPEGVDIPEGHCWKLKRSLYGLKQSGRTWNKTLDQSLLSMGLVRLDAETCLYVYKEDGEVCFLV--VYVDDLLLAATSRPFMNKVKAMLSSRFKMKDLGEAKFILGMAIHRDRRNGEIRLSQRNYIANVLERTGMSHCSPAPTPIPTSAKATEDDPVDNTILHSITIEGREVSYKSVVGSLMYAMLATRPDLAFAVGLLGRYAANPKQCHWSLVKRCLRYLKATENMELVYNGSHQGATMTFIGFVDAAWSDDVDSSRSTGGYVFISNSGAVGWSSKRQPMVSLSSTEAEYISMCYAGQHLA 1424          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: H3GB53_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=6 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB53_PHYRM)

HSP 1 Score: 158 bits (399), Expect = 9.480e-42
Identity = 101/273 (37.00%), Postives = 147/273 (53.85%), Query Frame = 1
Query:  115 KSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRR-EGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWA-EGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            K+++GLK + R WN T D+ +  I  Q S  DPCL      G+   +L  V VDD++I G   E +   K  +  RF M + G  + VLG E+  D P+G++++ QR Y  + LKR   DEC+ V +PV    +++  D     N+  +R  VG LM+ +T  +P IA  V   +R ME+P  E +   KRIFRY+      GI F       D  G+ DADWA +  D+KST+G    L    + W S+KQ  V+ S++EAEY+A+  A  E
Sbjct:   26 KAIYGLKQASRVWNETFDEFMCSIGFQVSAFDPCLYIKVVNGQC--VLVLVYVDDVLITGSSPELISRTKTDLKTRFEMTDSGKCAFVLGIELV-DGPDGSVTMCQRRYVDDILKRFAMDECKAVVSPVDMSTRLVPSDAATKVNAP-FREAVGALMHLMTATRPDIAYAVGYVSRFMENPQEEHWVAVKRIFRYLQGTKTHGICFK-PGDKIDFCGYSDADWAGDLADRKSTSGYTFMLMSAPVSWGSKKQSSVSLSTSEAEYIALSLAIQE 293          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY)

HSP 1 Score: 162 bits (411), Expect = 3.840e-41
Identity = 101/315 (32.06%), Postives = 163/315 (51.75%), Query Frame = 1
Query:    4 DVDATYLDAPVEEELFVKLPPVFSPFSRDIPFVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGRREGVDE-FKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRGG------NSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGME 927
            D  + +L++ ++E+++++ PP    F+    FV + +K+L+GLK   R W  TL   L  +   R   D  + F R+ G    ++ AV+VDD II G    ++  +K  +  R+ + + G +S VLG +V RD    T+S+ Q  Y    + R NFD+ + + TP+   +++ +  C              YR  +G LMYA  G +P IA  V   A+  E+P    +   KR+FRY+     L + +     G   EGFVDAD +    +++ TG V  ++ GA+ W S+KQ+LVT S+ E+EYVA   A  E
Sbjct: 1123 DFSSAFLNSTLDEDVYLEQPPHHE-FADRGKFVLKLKKALYGLKQGGRKWYETLCAALADLGFGRVEADHGIFFKREDGHL--VVLAVHVDDCIITGDSGSLNNSYKTQLSTRYKLTDLGPVSWVLGIKVTRDLEARTLSLSQHSYIDSIITRFNFDDLKPISTPMDPHLQLSKTQCPESALDVARMKRVPYREAIGALMYAAMGTRPDIAFAVSTLAQYSENPGWTHWEAVKRVFRYLVGTRHLSLVYGGGKDG--LEGFVDADGSSQEHRRAITGYVFLVDGGAVSWASKKQELVTLSTAESEYVAATHAAKE 1432          
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Match: U1GSH0_ENDPU (Integrase catalytic domain-containing protein n=1 Tax=Endocarpon pusillum (strain Z07020 / HMAS-L-300199) TaxID=1263415 RepID=U1GSH0_ENDPU)

HSP 1 Score: 161 bits (408), Expect = 5.040e-41
Identity = 97/312 (31.09%), Postives = 163/312 (52.24%), Query Frame = 1
Query:    1 MDVDATYLDAPVEEELFVKLPPVFSPFSRDIPFVRRPRKSLHGLK*SCRNWNSTLDDILVGIELQRSTTDPCLCFSRDKGKETDILAAVNVDDLIIAGR-REGVDEFKHTIGRRFTMENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTPVQGKVKILEPDCGRGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRMEDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGDQKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGMETA 933
            MD  A +L+  ++E +++++P  +    R    + + +K+L+GLK S   W       L  +   +S  DP L FS+ +G E  +  + +VDD +I G  ++GV E K  + +RF M++ G+  S LG E+ R + +G + + Q  Y  + LK       +  PTP++  +++   + G+      YR +VG + +     +P I+ TV + A     P +E +   KR+ RY+      G+ +  KS   +  G+ DA+WAEG D K+TTG +  +N G I W SRKQ +V  S+ EAEY+A   A  + A
Sbjct:  373 MDAVAAFLNGDIKENVYIEMPMRW----RQKGKICKLKKTLYGLKTSSGVWYGLQTSFLQSVGFVQSKYDPAL-FSK-RGAEGVVFISSHVDDYLITGSDKQGVQELKRAMAKRFKMKDMGAAVSYLGMEIER-KEDGVIKLTQERYLTQLLKETGMWNVKSKPTPIEAGLELKPAEAGKAVRQEDYRRLVGKVQWPAVVTRPDISHTVSRLASVSNTPTKEAWGALKRLLRYLRGTLRRGLRYGGKS---ELRGYSDANWAEGEDGKATTGIIFMMNGGPIHWFSRKQNIVALSTCEAEYIAAATATQDAA 674          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7817.15842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401H3M5_9APHY5.750e-4833.02Transposon Ty5-1 protein n=1 Tax=Sparassis crispa ... [more]
A0A401GQU1_9APHY8.380e-4633.97Uncharacterized protein n=3 Tax=Sparassis crispa T... [more]
W8ANX7_CERCA6.850e-4535.03Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3DEI6_NOCCA1.750e-4333.33Retrovirus-related Pol polyprotein from transposon... [more]
UPI001C79D3303.110e-4332.49Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
H3H9X3_PHYRM8.810e-4337.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4Q2D651_9AGAR3.320e-4232.52Integrase catalytic domain-containing protein (Fra... [more]
H3GB53_PHYRM9.480e-4237.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2G8SFR3_9APHY3.840e-4132.06Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
U1GSH0_ENDPU5.040e-4131.09Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7817contigH-paniculata_contig7817:8667..9680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score123.2
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog7029.ACYPI067527-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38VJ1@33154,3CB3U@33208,3DT1J@33213,3EE1Z@33342,3SW1M@50557,4294G@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
Exons2
Model size936
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7817.15842.1prot_H-paniculata_contig7817.15842.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7817 9012..9680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.0549784-UTR-H-paniculata_contig7817:8666..90111622930972.0549784-UTR-H-paniculata_contig7817:8666..9011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7817 8667..9011 +
1691481533.3076618-UTR-H-paniculata_contig7817:8666..90111691481533.3076618-UTR-H-paniculata_contig7817:8666..9011Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7817 8667..9011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930972.0745127-CDS-H-paniculata_contig7817:9011..91931622930972.0745127-CDS-H-paniculata_contig7817:9011..9193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7817 9012..9193 +
1691481533.3200557-CDS-H-paniculata_contig7817:9011..91931691481533.3200557-CDS-H-paniculata_contig7817:9011..9193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7817 9012..9193 +
1622930972.0919266-CDS-H-paniculata_contig7817:9271..96801622930972.0919266-CDS-H-paniculata_contig7817:9271..9680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7817 9272..9680 +
1691481533.3327954-CDS-H-paniculata_contig7817:9271..96801691481533.3327954-CDS-H-paniculata_contig7817:9271..9680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7817 9272..9680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7817.15842.1

>prot_H-paniculata_contig7817.15842.1 ID=prot_H-paniculata_contig7817.15842.1|Name=mRNA_H-paniculata_contig7817.15842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MENFGSLSSVLGTEVRRDRPNGTMSIFQRGYTREELKRCNFDECRGVPTP
VQGKVKILEPDCGRGGNSTQYRGMVGLLMYALTGIKPGIADTVHQAARRM
EDPHREDFSTCKRIFRYVSIMPDLGITFDDKSSGHDREGFVDADWAEGGD
QKSTTGNVLKLNDGAIIWCSRKQQLVTWSSTEAEYVAVGEAGMETA*
back to top

mRNA from alignment at H-paniculata_contig7817:8667..9680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7817.15842.1 ID=mRNA_H-paniculata_contig7817.15842.1|Name=mRNA_H-paniculata_contig7817.15842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig7817:8667..9680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGTAGATGCGACGTATTTGGACGCCCCCGTAGAAGAAGAGCTGTT TGTTAAGCTACCCCCCGTGTTTTCTCCTTTCTCCCGAGACATACCGTTTG TGCGCCGCCCGCGTAAAAGCCTGCATGGCCTCAAGTAGAGCTGCCGAAAC TGGAATAGCACTCTTGACGATATTCTTGTTGGAATAGAACTCCAGCGTTC CACTACTGACCCATGCTTGTGCTTCTCTCGCGACAAAGGAAAAGAGACAG ACATTCTCGCGGCCGTCAATGTTGACGACTTGATCATCGCTGGACGTCGT GAGGGAGTAGACGAGTTTAAGCACACCATAGGTCGGCGTTTTACGATGGA AAACTTTGGCTCCCTCTCGAGCGTGTTGGGAACAGAAGTACGACGTGACC GCCCCAATGGTACCATGTCAATATTCCAACGTGGCTATACCCGCGAGGAA CTGAAAAGATGCAACTTTGACGAGTGTCGAGGCGTCCCCACCCCTGTACA GGGAAAAGTAAAGATTTTGGAACCCGAGTCGGCCGAAAAGCCGCCCGAAC CGAAACCACTTGGGGCTGTACTGCCCGACATAAGCGCATGAGTACAAGAA ACCAGCTGTGGAAGAGGTGGCAATTCAACTCAATATCGAGGCATGGTAGG ATTACTCATGTACGCCTTGACAGGAATTAAACCTGGTATAGCAGACACGG TACACCAAGCAGCACGTCGTATGGAGGACCCACATCGGGAAGATTTCAGT ACATGCAAGCGCATTTTTCGTTATGTCAGTATCATGCCTGACCTCGGCAT TACGTTCGACGATAAGAGTAGTGGTCACGATCGGGAAGGATTCGTTGATG CCGATTGGGCGGAAGGTGGGGACCAAAAGTCCACAACAGGAAACGTTCTT AAGCTGAACGACGGTGCGATAATTTGGTGCTCTAGGAAGCAACAGTTAGT CACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGTAGGAGAAGCGGGAA TGGAGACGGCCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7817:8667..9680+

>mRNA_H-paniculata_contig7817.15842.1 ID=mRNA_H-paniculata_contig7817.15842.1|Name=mRNA_H-paniculata_contig7817.15842.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig7817:8667..9680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAACTTTGGCTCCCTCTCGAGCGTGTTGGGAACAGAAGTACGACG
TGACCGCCCCAATGGTACCATGTCAATATTCCAACGTGGCTATACCCGCG
AGGAACTGAAAAGATGCAACTTTGACGAGTGTCGAGGCGTCCCCACCCCT
GTACAGGGAAAAGTAAAGATTTTGGAACCCGAATGGAAAACTTTGGCTCC
CTCTCGAGCGTGTTGGGAACAGAAGTACGACGTGACCGCCCCAATGGTAC
CATGTCAATATTCCAACGTGGCTATACCCGCGAGGAACTGAAAAGATGCA
ACTTTGACGAGTGTCGAGGCGTCCCCACCCCTGTACAGGGAAAAGTAAAG
ATTTTGGAACCCGACTGTGGAAGAGGTGGCAATTCAACTCAATATCGAGG
CATGGTAGGATTACTCATGTACGCCTTGACAGGAATTAAACCTGGTATAG
CAGACACGGTACACCAAGCAGCACGTCGTATGGAGGACCCACATCGGGAA
GATTTCAGTACATGCAAGCGCATTTTTCGTTATGTCAGTATCATGCCTGA
CCTCGGCATTACGTTCGACGATAAGAGTAGTGGTCACGATCGGGAAGGAT
TCGTTGATGCCGATTGGGCGGAAGGTGGGGACCAAAAGTCCACAACAGGA
AACGTTCTTAAGCTGAACGACGGTGCGATAATTTGGTGCTCTAGGAAGCA
ACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGTAGGAG
AAGCGGGAATGGAGACGGCCTAGCTGTGGAAGAGGTGGCAATTCAACTCA
ATATCGAGGCATGGTAGGATTACTCATGTACGCCTTGACAGGAATTAAAC
CTGGTATAGCAGACACGGTACACCAAGCAGCACGTCGTATGGAGGACCCA
CATCGGGAAGATTTCAGTACATGCAAGCGCATTTTTCGTTATGTCAGTAT
CATGCCTGACCTCGGCATTACGTTCGACGATAAGAGTAGTGGTCACGATC
GGGAAGGATTCGTTGATGCCGATTGGGCGGAAGGTGGGGACCAAAAGTCC
ACAACAGGAAACGTTCTTAAGCTGAACGACGGTGCGATAATTTGGTGCTC
TAGGAAGCAACAGTTAGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTG
CTGTAGGAGAAGCGGGAATGGAGACGGCCTAG
back to top