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Homology
BLAST of mRNA_H-paniculata_contig7813.15837.1 vs. uniprot
Match: D8LBI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBI5_ECTSI) HSP 1 Score: 268 bits (685), Expect = 1.770e-81 Identity = 122/171 (71.35%), Postives = 148/171 (86.55%), Query Frame = 1
Query: 112 MSVTPSYSNGVTSWSINMNFKYPFAWKTVSSFVLRQKAKGPPDDMVTLEVERNTFKYVVKMPWYARLVLAKSIVWHDVISVNKDEQVLSEDGTNVSLRRLGSVRDMSIWRACKKDPDVTLYEKKIDFDIRMPVGPTIMMQVAQPLVRWFQTKSHLCRELEVEAIRDYLAEE 624
MSVTP+ S GVTSWSI M+F+YPF W+T ++FVLR KAKGPPD+MVTLEV+RN FKY V MPWYARLVL K+I+WHDV+ N + LSEDG N+SL+RLG+VRD S WRAC+ DP+VT+Y K++DFDIRMPVGPTIMMQVAQPL+RWF+TKSHLCRELEV+AIR+++ E
Sbjct: 1 MSVTPTRSGGVTSWSILMDFRYPFPWETTAAFVLRVKAKGPPDEMVTLEVDRNVFKYNVHMPWYARLVLGKNIIWHDVLHANPTTKTLSEDGINMSLQRLGTVRDCSSWRACEDDPNVTMYSKRVDFDIRMPVGPTIMMQVAQPLMRWFRTKSHLCRELEVQAIREFIEAE 171
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1949 |
| Cds size | 840 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7813.15837.1 >prot_H-paniculata_contig7813.15837.1 ID=prot_H-paniculata_contig7813.15837.1|Name=mRNA_H-paniculata_contig7813.15837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp
MVLSPQLLAKMSVTPSYSNGVTSWSINMNFKYPFAWKTVSSFVLRQKAKG PPDDMVTLEVERNTFKYVVKMPWYARLVLAKSIVWHDVISVNKDEQVLSE DGTNVSLRRLGSVRDMSIWRACKKDPDVTLYEKKIDFDIRMPVGPTIMMQ VAQPLVRWFQTKSHLCRELEVEAIRDYLAEETLGGEQAEEADQERPLFLE EQGQNGRRHGRPSRGRGRALSSSSSGTEEDGGDSPVAITRMASVKSNVRA KAKAAAAAGTAVAKQSQGTVTGCRCEGDE* back to topmRNA from alignment at H-paniculata_contig7813:1571..7049+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig7813.15837.1 ID=mRNA_H-paniculata_contig7813.15837.1|Name=mRNA_H-paniculata_contig7813.15837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5479bp|location=Sequence derived from alignment at H-paniculata_contig7813:1571..7049+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CAGGTCCCCATTTCAAAAAGTTTGTAGAAGTGTTGTTAGTAGTGCACAGG
GGTTCAGGAGAGAGAACAGGCATCGGGTTGCATGGTATTGTCTCCACAAC
TGCTCGCCAAAATGTCGGTGACGCCGTCATATAGTAACGGGGTGACTTCG
TGGTCCATCAATATGAATTTCAAGTGAGTGCGAAGGAAAGGAAAGGATGC
TCTCGGGCGCCGATGCTTGTAGCACGATAACGGCAGGTTAGGGGGATAGT
CGAATTCCTGAATATCATATCGTCGTGTTCCTCGTGTGCCCCATGTGTGC
TGCCATGTGGTTGCGCGTTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTA
TGTGTGTACATATTTGACGAGGGTCCATCTGTACTCTTGGATGTTAATCA
AGGCTTGCGGACGCGGATGGATTCAGCTGGAGCAGTCCGCGATCGTCAGT
TAGGTTTGCGTTCTTTCCCCGCCTGTTAATATGGAAATCGCACATGAGCA
TTCCTTTCTCGCCTCTTCATTATTTGTAGAATGTCTTCGTACTAGTATGT
ATTTGTATGTATCTGCATGTATCTTGGAGCAGGGGGTGCTGCTTGCATGT
GACCACATTTTTTCTATCATGCTCACAAGGGGGACTGTTGTGTGCGGACT
TGACCACAACCGTAGATTGGCCTCTTTGAAATTGAAAGACAAATTCGACA
AGCCTTTGGAGAGGTGTTAGATAACACGGCTGGGCTTGTTCAGATATCTT
CACCGTAGAGCTTCTTTATAATAGATTCTTCCCGACGACCGTCAACTGCT
CCGTTCTCGTCAAATAAAGATGCGCAAGCGTTTCCGTTTGAAACGAAACA
AACTGTACCTTGTTGTGGACCTGGATAGATGAGACAGCACACCCAACATG
AACAGGTGTCCATTGTCCTGTCCGAGGCCAACAAGCCCATCAATTGTCCT
CTTGCCGCTCACCCAAATCGCTCTCCTGTTACCCGGCTTGCCCAATCCTC
CCGCGTGTGTCTTGGTGCTTGGCCGCTGCGGTACATGTTGCTTGACTCTA
CTCAACACCCCGTCAGATACCCCTTCGCATGGAAAACAGTGTCATCGTTC
GTGTTGAGGCAGAAGGCAAAGGGGCCACCAGACGATATGGTGACCCTCGA
GGTGGAGAGAAACACGTGAGAGCACCGGCCAATGAGGCACATTCAATGTC
CAATAGTCGTTTTTTTTATCAATTCTTCAAGAGCCGGACTTGCGTAACGG
CCAAAATATAGATTTGCTGACGATCAGTCATGAATAATGACGAATGCGCC
TTGTTAGTGCATTTCAGGTGTGAAAGAGGGCCCACTTTTTGTCCTTTTGG
AGGATTTGATCTTGGAATTAGTCCAGGGTGAGAATGAGCGAACATTGGCT
TTTCTCGTAATTCTACAGCTATTTAAAGAGGGTCAGCACTTCCTTGAGAG
TTACATTGTGAAATAGAGGCTTTTCTTCAGGCGGGCGAAAACTGTCAATG
ATAACAAAAGCAGAACCGCGTTATATATGAGATTACTTTTTGAGCCCCCA
CCGCCCAAGACTGCTTCCGTAACTCCTTTTGCGTGCTTGTGTTTGTGTTT
TATTTCTCGTGCTCTGTCTGCCTGTTGCCTCAGATTCAAGTACGTCGTAA
AGATGCCGTGGTACGCGAGGTTGGTCCTGGCGAAGAGCATCGTTTGGCAC
GACGTCATATCCGTTAACAAAGATGAACAGGTGCGTATTTCAATCGCTTG
GATACCAGTGTGCAATAAGTCACGTACTACAATACCGAACTAAGACTACT
ACATCGGGACATACTAGTCATACCCTCTATCTTGCTAAATAGGCCGTTTT
CGCATGCGCAGTAAATGCGCTATTTTGGATCCAAAACGGATACTAAGTTG
GCTATAAATGATCATGGAATAATTTCTAAGCGACAATCAATGTAAGGTAT
CTCCAGAGAGCGTACGATCTGACGCTTCCTACGGTGCAACACAACTTGAA
AACCGTTACGTTTTCGAAAAGTTCCACCCGAGAGAACACACCACCGGTAT
TCAAAAACCGTATTTCCACCAGATTTTCAGGACCTTTTGCGCCGCCGCGC
GGATGTCTGCTAGATTTGGTGGAGTCCTTCCTTAAGACCAGGCACAGATA
TTGATGTACCGGTTTTTGGAGATTCGGCCTGCAGAGCTCAATCTGTGTTT
TGTTGCAGCTGCCGGTTTTTGGTCATACTCTAGAACACAGTGTAAAGTTT
AAGGACATCCATCAATTCAACGTTTTTTTATTCTGTTTTTTTTTTCCATC
CTTTTTCAATTGACTACGCCGAGATACTTATGTGCCATATTTTTTCTTCC
TTATAATTGTCGAAATATTGCCCGAAAACCCTATTTTCTTATGGGAAAAA
TGACAGATTTTTGTTCTAACTTCCTGGTTTTTCAATCAACAATCTGAGAA
CTTTTTTTCTGTATGCACTCCCGGCATCGGTAAGAACACCCGCATTAAAA
GATTCGCTGCACTTGTCGAGATATAGCGAGGGAGTGATTAATATGTCCCA
CTGTTGTACCTACTTGCAGACTTGACCGTTCTTTCCCGTCACCTTTTTTT
TTCTTTTCTGAAGACATGACGAGACAACATAACGAGAATAAATTAGCACA
TAGCCAAATTCCAGGTTTTCTCCTTGTTTTCTGGGGGTACTCGTGTTTTT
GCATGTCATACCGTACTTGTTCGACCATTGAGCACGCGTCCCCCCGATGG
AGGCAAAATAGTACTACGGAATATATTGGCACGTGTCGAGCATCATAGCT
TCGTAGATTGATTGAATCACGCTTGAAAAAATGTGTGTTCGACTACATTT
ACTGCTGGTATTCAGAGCATGGATTTCATTTGTTGCCTCGGGCGTGAGAC
CGTTCTCGCCGGGCGGCGCCGGTTTCCTCAGAGTCCGCCGTAAGGTATTG
GAATAATCCCATAACAAGACACAAAGCAACAATACCTAATTTTTTTTTTC
GTTTTTGTTGTTCTCCTCGAGCGTGAGCACTTGTTGGCCCTCCCGCCACG
CAGCAAAAGGAGCCATGCCGTCAAGCAGTTGTTACCCTATATACAGTAAA
TAGGTGATCATCTAGCGACTGATATGTAAGAAGTGATACTACAAGAGTAC
ACTCAAACGAACGATCCGGAAATCAACACCGCACATCGCTTATTTTTTTT
CCTGCCTGGTTCTCGTTTTTATTGCCTGGTTGTGTGGAATTCAGGTTCTG
TCGGAAGATGGCACAAACGTTAGCCTCAGGCGCTTGGGCAGCGTTCGGGA
TATGTCGATTTGGCGCGCTTGCAAGAAGGACCCGGACGTGACGCTCTACG
AGAAGAAGATTGACTTCGACATCAGGATGCCTGTGGGTCCGACCATCATG
ATGCAGGTGAAAGCTCACGGAGCTGCAGTACAGATGCTGCTTTGTGTCAT
TTTGGTTTTATGTATGGTAGTCGCGGGGGCGGCGAGGGGTGACCATGTGC
TGCGATGCCCGCGGCTGTTGTTTGCTGGTCTTGAGCTTTTGAGTTGCTCT
TGGATTTCGTGTGCTTGTGTACCTTTTCTGGTATTTTTGTTTTTTCCTGT
GTTTTAGGGCTCTGTTCGTTTATTATGGTATATTGAAGGTTCATCGGATC
CCCTTTTACCCGGCGCCTACGAATCTAAGGGATCGGGCTAATGATGAGAA
TGATAATTGATGATGTCAGTGTTGTTATTGTTCTTGTATCAAGAATTCAA
GATACAGCGGGTTAACGTGGCTTGCGGTTTCCATTGTCTCTCAATCAATA
CCCTATTCTCGAGTGCATCTATTTTTTGTATATTTTGCTTTGGTGGATGA
TTTCTCATACAGCCGATTCCCGCACAATACCACACATTTGCTGAGAAAGT
GTACGTACTGGCTGTACCTTCGAAGGATCCTCGCGAAACGAAAATAAACA
CGTTTATTGGCCGCCCCCACCTGTATATTATTTTTGCCGACCCCCCTCCC
CCCCGTCTATGGCACCTACACTGACACCGATGACTACGGTCACGACACGA
ACGCACACCAGGTGGCCCAGCCGTTAGTGCGGTGGTTTCAGACCAAGAGC
CACCTCTGCAGAGAGCTGGAGGTTGAAGCCATCCGCGACTACCTCGCCGA
AGAGACTCTCGGAGGGGAACAGGCCGAAGAAGCAGACCAAGAACGACCAC
TCTTCCTCGAGGAACAAGGGCAGAACGGGCGACGACACGGCCGTCCTTCG
AGAGGGCGGGGGCGGGCACTGTCCTCGTCGTCCTCTGGAACGGAGGAGGA
CGGGGGGGATAGTCCGGTGGCGATTACGAGAATGGCCAGTGTGAAATCGA
ATGTGAGGGCGAAAGCCAAAGCCGCGGCGGCGGCCGGGACTGCCGTCGCG
AAGCAATCGCAAGGAACGGTGACGGGGTGTAGGTGTGAGGGCGATGAATA
GTTGTTTTTTTATTGGTGTATTGTCTGCTTTCGGTGGGTTTTGGTAGGGA
CTTCTTTCGACGCGCCTCGTTTGTATGTGTTCGCGTGACTACCCTTCATG
TCGCACCTTCTTTGGTACCTTTTTCCTTTCTCTTGTTTTTTGAAGAAAAT
GTAACCTGTGTTCTTTCTTGTGGTTTGTTCTCGAGCTGAGACGTGAATCA
GTAACTTGGAAGATACTACCTTATCATCGCGTTTTTGTTTTTATCAGTTG
TTGTCTTGTTACGACGGGATTTGCAGCGAGTTTAACCTTAGTAGGCTTTC
CCCTTTTCAATAATACGTTGTTGTGTTGATATTTCCTGTGTAGAAACCGC
AGCCATGGAAATATCGGCCTCGATACTCTCAGAATTGTATCAGTAGTACA
TATAGACGTCAACGTTTGAAAGGGATACTGACTATTTGTGTTTTCATAAT
ACATTTGAAAATAGATACGATAGGCTCTTTTCTGTATTCGGGTCTTGATT
AGGTTCGAGGGTGTCTTGAGCAAAGCAGCGTTGAGACAGAGTTCTCTGGA
AATAAGTGCTGGGCGACTCCTTCGGCATTGGCGTGCATACGTAATTTCCA
GCTATTGTGGTGTTCTGTCTTTTCTCTCTTCAGGCTGTTTCTCTTGTTTG
TTCCCCCCCTGTGCTTTAGTACGCTACAGCCAGTTACAGGTCGGTGTAAA
CGGAGATGGGCAAATCCCTCCGCCTGTCAAAGCTGATGGTATATCGTGCT
ATCAGGAAGGCCCATGTAGTCATGCTCTTTTTACTCTACCTTTTGCGTGA
TAATCACGGGAAGGATTCTCCCCCTCGTATCATTTTGTCTGTGTGTGTAT
CTTGCTTTCGAACGGAGTTGTGACACACAAATGTTCGAGCAATGTCTTCT
GTACGGTAATATAAGTTTTCTGGCATAACATATCCCGCCTTTCTCAGTTT
TGTCAAGATATAGTACACGGGGCTCTTATGTGGAACGTAAAGTGACATAC
TGTGTGAACAGCATGGGTCAGATTGGCTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig7813:1571..7049+ >mRNA_H-paniculata_contig7813.15837.1 ID=mRNA_H-paniculata_contig7813.15837.1|Name=mRNA_H-paniculata_contig7813.15837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig7813:1571..7049+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGTATTGTCTCCACAACTGCTCGCCAAAATGTCGGTGACGCCGTCATA TAGTAACGGGGTGACTTCGTGGTCCATCAATATGAATTTCAAATGGTATT GTCTCCACAACTGCTCGCCAAAATGTCGGTGACGCCGTCATATAGTAACG GGGTGACTTCGTGGTCCATCAATATGAATTTCAAATACCCCTTCGCATGG AAAACAGTGTCATCGTTCGTGTTGAGGCAGAAGGCAAAGGGGCCACCAGA CGATATGGTGACCCTCGAGGTGGAGAGAAACACATACCCCTTCGCATGGA AAACAGTGTCATCGTTCGTGTTGAGGCAGAAGGCAAAGGGGCCACCAGAC GATATGGTGACCCTCGAGGTGGAGAGAAACACATTCAAGTACGTCGTAAA GATGCCGTGGTACGCGAGGTTGGTCCTGGCGAAGAGCATCGTTTGGCACG ACGTCATATCCGTTAACAAAGATGAACAGATTCAAGTACGTCGTAAAGAT GCCGTGGTACGCGAGGTTGGTCCTGGCGAAGAGCATCGTTTGGCACGACG TCATATCCGTTAACAAAGATGAACAGGTTCTGTCGGAAGATGGCACAAAC GTTAGCCTCAGGCGCTTGGGCAGCGTTCGGGATATGTCGATTTGGCGCGC TTGCAAGAAGGACCCGGACGTGACGCTCTACGAGAAGAAGATTGACTTCG ACATCAGGATGCCTGTGGGTCCGACCATCATGATGCAGGTTCTGTCGGAA GATGGCACAAACGTTAGCCTCAGGCGCTTGGGCAGCGTTCGGGATATGTC GATTTGGCGCGCTTGCAAGAAGGACCCGGACGTGACGCTCTACGAGAAGA AGATTGACTTCGACATCAGGATGCCTGTGGGTCCGACCATCATGATGCAG GTGGCCCAGCCGTTAGTGCGGTGGTTTCAGACCAAGAGCCACCTCTGCAG AGAGCTGGAGGTTGAAGCCATCCGCGACTACCTCGCCGAAGAGACTCTCG GAGGGGAACAGGCCGAAGAAGCAGACCAAGAACGACCACTCTTCCTCGAG GAACAAGGGCAGAACGGGCGACGACACGGCCGTCCTTCGAGAGGGCGGGG GCGGGCACTGTCCTCGTCGTCCTCTGGAACGGAGGAGGACGGGGGGGATA GTCCGGTGGCGATTACGAGAATGGCCAGTGTGAAATCGAATGTGAGGGCG AAAGCCAAAGCCGCGGCGGCGGCCGGGACTGCCGTCGCGAAGCAATCGCA AGGAACGGTGACGGGGTGTAGGTGTGAGGGCGATGAATAGGTGGCCCAGC CGTTAGTGCGGTGGTTTCAGACCAAGAGCCACCTCTGCAGAGAGCTGGAG GTTGAAGCCATCCGCGACTACCTCGCCGAAGAGACTCTCGGAGGGGAACA GGCCGAAGAAGCAGACCAAGAACGACCACTCTTCCTCGAGGAACAAGGGC AGAACGGGCGACGACACGGCCGTCCTTCGAGAGGGCGGGGGCGGGCACTG TCCTCGTCGTCCTCTGGAACGGAGGAGGACGGGGGGGATAGTCCGGTGGC GATTACGAGAATGGCCAGTGTGAAATCGAATGTGAGGGCGAAAGCCAAAG CCGCGGCGGCGGCCGGGACTGCCGTCGCGAAGCAATCGCAAGGAACGGTG ACGGGGTGTAGGTGTGAGGGCGATGAATAG back to top
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